Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer DOI Creative Commons

Miho Oka,

Liu Xu,

Toshihiro Suzuki

et al.

Genome biology, Journal Year: 2021, Volume and Issue: 22(1)

Published: Jan. 4, 2021

Abstract Background Long-read sequencing of full-length cDNAs enables the detection structures aberrant splicing isoforms in cancer cells. These are occasionally translated, presented by HLA molecules, and recognized as neoantigens. This study used a long-read sequencer (MinION) to construct comprehensive catalog non-small-cell lung cancers, which novel potential neoantigens identified. Results Full-length cDNA is performed using 22 cell lines, total 2021 The protein expression some these then validated proteome analysis. Ablations nonsense-mediated mRNA decay (NMD) factor, UPF1, SF3B1, found increase proportion transcripts. NetMHC evaluation binding affinities each type molecule reveals that potentially generate neoantigen candidates. We also identify seven specimens. An enzyme-linked immune absorbent spot assay indicates approximately half peptide candidates have activate T responses through their interaction with molecules. Finally, we estimate number Cancer Genome Atlas (TCGA) datasets referring constructed disruption NMD factors significantly correlated TCGA-Lung Adenocarcinoma data collection. Conclusions Our results indicate essential for precise identification transcript

Language: Английский

Significance of Nanomaterials in Wearables: A Review on Wearable Actuators and Sensors DOI
W. A. D. M. Jayathilaka, Kun Qi,

Yanli Qin

et al.

Advanced Materials, Journal Year: 2018, Volume and Issue: 31(7)

Published: Dec. 27, 2018

Together with the evolution of digital health care, wearable electronics field has evolved rapidly during past few years and is expected to be expanded even further within first next decade. As stage wearables predicted move toward integrated wearables, nanomaterials nanocomposites are in spotlight search for novel concepts integration. In addition, conversion current devices attachment-based into technology may involve a significant size reduction while retaining their functional capabilities. Nanomaterial-based sensors have already marked presence distinction nanomaterial-based actuators still at embryonic stage. This review looks contribution focus on actuators.

Language: Английский

Citations

552

Chronotype and Social Jetlag: A (Self-) Critical Review DOI Creative Commons
Till Roenneberg, Luísa K. Pilz, Giulia Zerbini

et al.

Biology, Journal Year: 2019, Volume and Issue: 8(3), P. 54 - 54

Published: July 12, 2019

The Munich ChronoType Questionnaire (MCTQ) has now been available for more than 15 years and its original publication cited 1240 times (Google Scholar, May 2019). Additionally, online version, which was until July 2017, produced almost 300,000 entries from all over the world (MCTQ database). MCTQ gone through several versions, translated into 13 languages, validated against other objective measures of daily timing in independent studies. Besides being used as a method to correlate circadian features human biology with factors—ranging health issues geographical factors—the gave rise quantification old wisdoms, like “teenagers are late”, new concepts, social jetlag. Some MCTQ’s simplicity some view it critically. Therefore, is time present self-critical on MCTQ, address misunderstandings, give definitions MCTQ-derived chronotype concept

Language: Английский

Citations

514

Mosquito feeding behavior and how it influences residual malaria transmission across Africa DOI Creative Commons
Ellie Sherrard-Smith, Janetta Skarp, Andrew D. Beale

et al.

Proceedings of the National Academy of Sciences, Journal Year: 2019, Volume and Issue: 116(30), P. 15086 - 15095

Published: July 8, 2019

Significance Malaria transmission persists even when mosquito control is used effectively. This “residual transmission” measures all forms of that are beyond the reach standard insecticidal nets and indoor residual spraying insecticides optimally. The epidemiological importance time day mosquitoes bite how much this contributes to unclear. scale problem must be understood demonstrate need for outdoor vector tools. An additional 10.6 million clinical cases malaria predicted annually given 10% higher level biting observed here. Mosquito species behavior data together with people’s resting sleeping patterns needed fully measure intervention efficacy accurately quantify transmission.

Language: Английский

Citations

237

New insights into the evasion of host innate immunity by Mycobacterium tuberculosis DOI Creative Commons
Qiyao Chai, Lin Wang, Cui Hua Liu

et al.

Cellular and Molecular Immunology, Journal Year: 2020, Volume and Issue: 17(9), P. 901 - 913

Published: July 29, 2020

Abstract Mycobacterium tuberculosis (Mtb) is an extremely successful intracellular pathogen that causes (TB), which remains the leading infectious cause of human death. The early interactions between Mtb and host innate immune system largely determine establishment TB infection disease development. Upon infection, cells detect through a set receptors launch range cellular events. However, these defense mechanisms are extensively modulated by to avoid clearance. In this review, we describe emerging role cytosolic nucleic acid-sensing pathways at – interface summarize recently revealed circumvents strategies such as membrane trafficking integrity, cell death autophagy. addition, discuss newly elucidated manipulates molecular regulatory machinery immunity, including intranuclear machinery, ubiquitin system, intrinsic components. A better understanding evasion adopted will provide new insights into pathogenesis contribute development more effective vaccines therapies.

Language: Английский

Citations

228

Phospholipids and cholesterol: Inducers of cancer multidrug resistance and therapeutic targets DOI
Joanna Kopecka, Patrick Trouillas, Ana Čipak Gašparović

et al.

Drug Resistance Updates, Journal Year: 2019, Volume and Issue: 49, P. 100670 - 100670

Published: Nov. 29, 2019

Language: Английский

Citations

224

Direct solution-phase synthesis of 1T’ WSe2 nanosheets DOI Creative Commons
Maria S. Sokolikova, Peter C. Sherrell,

Pawel Palczynski

et al.

Nature Communications, Journal Year: 2019, Volume and Issue: 10(1)

Published: Feb. 12, 2019

Abstract Crystal phase control in layered transition metal dichalcogenides is central for exploiting their different electronic properties. Access to metastable crystal phases limited as direct synthesis challenging, restricting the spectrum of reachable materials. Here, we demonstrate solution distorted octahedrally coordinated structure (1T’ phase) WSe 2 nanosheets. We design a kinetically-controlled regime colloidal enable formation phase. 1T’ branched few-layered nanosheets are produced high yield and reproducible controlled manner. The fully convertible into semiconducting 2H upon thermal annealing at 400 °C. metallic nature exhibited by an enhanced electrocatalytic activity hydrogen evolution reaction compared comparable other phases. This can potentially be extended materials providing access

Language: Английский

Citations

200

Odorant Receptors and Odorant-Binding Proteins as Insect Pest Control Targets: A Comparative Analysis DOI Creative Commons
Herbert Venthur, Jing‐Jiang Zhou

Frontiers in Physiology, Journal Year: 2018, Volume and Issue: 9

Published: Aug. 23, 2018

Recently, two alternative targets in insect periphery nerve system have been explored for environmentally-friendly approaches pest management, namely odorant-binding proteins (OBPs) and odorant receptors (ORs). Located antennae, OBPs are thought to be involved the transport of odorants ORs specific signal transduction behaviorally active odorants. There is rich information on OBP binding affinity molecular docking bioactive compounds as well ample 3D crystal structures due feasible production recombinant proteins. Although these provide excellent opportunities them considered control a tool design agents, debates their specificity represent an obstacle. On other hand, recently functionally characterized with increasing evidence specificity, sensitivity functional roles behaviors. However, major barrier use semiochemical discovery lack structures. Thus, not analyzed comparatively together so far feasibility targets. Here, we summarize state research terms its application management. We discuss suitability both selection toward new potent semiochemicals. argue that promising can used identify super-ligands likely present nature reduced risk resistance development than pesticides currently agriculture. massive identification through RNA-seq improved measurements, could reconsidered suitable discovery.

Language: Английский

Citations

194

Multifunctional membranes with super-wetting characteristics for oil-water separation and removal of hazardous environmental pollutants from water: A review DOI
Umair Baig, Muhammad Faizan, Mohd Sajid

et al.

Advances in Colloid and Interface Science, Journal Year: 2020, Volume and Issue: 285, P. 102276 - 102276

Published: Oct. 8, 2020

Language: Английский

Citations

174

Health beneficial and pharmacological properties of p-cymene DOI

Abdelaali Balahbib,

Nasreddine El Omari, Naoufal El Hachlafi

et al.

Food and Chemical Toxicology, Journal Year: 2021, Volume and Issue: 153, P. 112259 - 112259

Published: May 11, 2021

Language: Английский

Citations

174

Influence of the mechanical properties of biomaterials on degradability, cell behaviors and signaling pathways: current progress and challenges DOI
Lu Wang, Cunyang Wang, Shuai Wu

et al.

Biomaterials Science, Journal Year: 2020, Volume and Issue: 8(10), P. 2714 - 2733

Published: Jan. 1, 2020

We have clarified the influence of mechanical properties biomaterials on degradability and cell response, also design targets approaches.

Language: Английский

Citations

173