Integrative Approach to Gene Expression Data Analysis: Combining Biclustering Techniques with Gene Ontology DOI
Sergii Babichev,

Oleg Yarema,

Igor Liakh

et al.

Lecture notes on data engineering and communications technologies, Journal Year: 2024, Volume and Issue: unknown, P. 149 - 177

Published: Jan. 1, 2024

Language: Английский

Differential detoxification enzyme profiles in C-corn strain and R-rice strain of Spodoptera frugiperda by comparative genomic analysis: insights into host adaptation DOI Creative Commons
Pengfei Yao,

Syed Husne Mobarak,

Mao‐Fa Yang

et al.

BMC Genomics, Journal Year: 2025, Volume and Issue: 26(1)

Published: Jan. 6, 2025

The fall armyworm (FAW) Spodoptera frugiperda, a highly invasive, polyphagous pest, poses global agricultural threat. It has two strains, the C-corn and R-rice each with distinct host preferences. This study compares detoxification enzyme gene families across these strains related species to explore their adaptation diverse plant metabolites. A total of 1,995 detoxification-related genes, including cytochrome P450 monooxygenases (CYPs), carboxylesterases (COEs), glutathione S-transferases (GSTs), UDP-glucuronosyltransferases (UGTs), ATP-binding cassette transporters (ABCs), were identified genus Spodoptera, S. littoralis, litura, picta, exigua, both FAW strains. higher abundance phase I enzymes (CYPs COEs) GSTs was observed in species, while exhibited fewer notable differences copy numbers between C R Analyses at subfamily level revealed significant variation distribution expression, particularly within II enzymes. Expansions CYP6AE detected strain, contractions GST-ε, CYP9A, CYP4M, UGT33B, UGT33F occurred In contrast, no substantial III ABC Functional predictions protein interaction networks suggest broader expansion metabolism-related genes strain compared strain. These findings emphasize pivotal role adaptation, providing molecular insights into FAW's capacity for range expansion, which are crucial devising targeted sustainable pest management strategies. differential expression different frugiperda.

Language: Английский

Citations

1

The genetic architecture of resistance to flubendiamide insecticide in Helicoverpa armigera (Hübner) DOI Creative Commons
Douglas Amado, Eva L. Koch, Erick M. G. Cordeiro

et al.

PLoS ONE, Journal Year: 2025, Volume and Issue: 20(1), P. e0318154 - e0318154

Published: Jan. 29, 2025

Insecticide resistance is a major problem in food production, environmental sustainability, and human health. The cotton bollworm Helicoverpa armigera globally distributed crop pest affecting over 300 species. H. has rapidly evolved insecticide resistance, making it one of the most damaging pests worldwide. Understanding genetic basis provides insights to develop tools, such as molecular markers, that can be used slow or prevent evolution resistance. We explore architecture widely insecticide, flubendiamide, using two complementary approaches: genome-wide association studies (GWAS) wild-caught samples quantitative trait locus (QTL) mapping controlled cross susceptible resistant laboratory strains. Both approaches identified on chromosome 2, revealing SNPs within 976 bp monitor field flubendiamide. This was only region linkage mapping, though GWAS revealed additional sites associated with Other loci by populations contained known detoxification genes from ATP-binding cassette family, ABCA1, ABCA3, ABCF2 MDR1. Our findings an oligogenic architecture, contrasting previous reports monogenic ryanodine receptor . work elucidates evolving will contribute developing effective management strategies.

Language: Английский

Citations

1

miR-92a-3p regulates egg fertilization through ribogenesis in the invasive fall armyworm Spodoptera frugiperda DOI
Jyoti Pathak,

Selva Babu Selvamani,

Subhi Srivastava

et al.

International Journal of Biological Macromolecules, Journal Year: 2025, Volume and Issue: 295, P. 139637 - 139637

Published: Jan. 8, 2025

Language: Английский

Citations

0

Identification and Prediction of Differentially Expressed MicroRNAs Associated with Detoxification Pathways in Larvae of Spodoptera frugiperda DOI Open Access
Yanping Wang, Xingyu Chen, De-Qiang Pu

et al.

Genes, Journal Year: 2024, Volume and Issue: 15(8), P. 1021 - 1021

Published: Aug. 3, 2024

Spodoptera frugiperda poses a severe threat to crops, causing substantial economic losses. The increased use of chemical pesticides has led resistance in S. populations. Micro ribonucleic acids (MicroRNAs or miRNAs) are pivotal insect growth and development. This study aims identify miRNAs across different developmental stages explore differential expression predict target gene functions. High-throughput sequencing was conducted on eggs, 3rd instar larvae, pupae, adults. Bioinformatics analyses identified differentially expressed specifically with candidate screened genes, particularly those involved detoxification pathways. A total 184 known 209 novel were stages. Comparative analysis revealed 54, 15, 18 compared egg, pupa, adult stages, respectively. Eight showed significant validated by quantitative reverse transcription PCR (qRT-PCR). Gene Ontology Kyoto Encyclopedia Genes Genomes enrichment predicted genes’ functions, identifying eight targeting 10 families associated metabolism, including P450s, glutathione S-transferase (GSTs), ATP-binding cassette (ABC) transporters, sodium channels. These findings elucidate the species-specific miRNA profiles regulatory mechanisms detoxification-related genes offering insights strategies for effectively managing this pest.

Language: Английский

Citations

1

In silico identification and characterization of microRNAs from rotifers, cladocerans, and copepods DOI
Min‐Sub Kim, Zhou Yang, Jae‐Seong Lee

et al.

Marine Pollution Bulletin, Journal Year: 2024, Volume and Issue: 209, P. 117098 - 117098

Published: Oct. 22, 2024

Language: Английский

Citations

1

The genetic architecture of resistance to flubendiamide insecticides inHelicoverpa armigera(Hübner) (Lepidoptera: Noctuidae) DOI Creative Commons
Douglas Amado, Eva L. Koch, Erick M. G. Cordeiro

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: July 28, 2024

Abstract Insecticide resistance is a major problem in food production, environmental sustainability, and human health. The cotton bollworm Helicoverpa armigera globally distributed crop pest affecting over 300 species. H. has rapidly evolved insecticide resistance, making it one of the most damaging pests worldwide. Understanding genetic basis provides insights to develop tools, such as molecular markers, that can be used slow or prevent evolution resistance. We explore architecture widely insecticide, flubendiamide, using two complementary approaches: genome-wide association studies (GWAS) wild-caught samples quantitative trait locus (QTL) mapping controlled cross susceptible resistant laboratory strains. Both approaches identified on chromosome 2, revealing SNPs within 976 bp monitor field flubendiamide. This was only region linkage mapping, though GWAS revealed additional sites associated with Other loci by populations contained known detoxification genes from ATP-binding cassette family, ABCA1, ABCA3, ABCF2 MDR1. Our findings an oligogenic architecture, contrast previous reports monogenic ryanodine receptor . work elucidates evolving will contribute development effective management strategies. Author summary agricultural challenges security, various classes well Bacillus thuringiensis toxins. this crucial for developing (IRM) study investigated flubendiamide wild-derived QTL backcross One specific 2 found both analysis showed significant potential PCR-based marker monitoring Additionally, five more populations. candidate are primarily mechanisms calcium homeostasis. advances understanding complex armigera, providing valuable tools IRM programs establishing future studies.

Language: Английский

Citations

0

Molecular Diagnostics for Monitoring Insecticide Resistance in Lepidopteran Pests DOI Creative Commons
Camila Ivo C. Vilarinho Fernandes Junqueira, Eliza F. M. B. Nascimento, Leonardo A. Vidal

et al.

Agronomy, Journal Year: 2024, Volume and Issue: 14(11), P. 2553 - 2553

Published: Oct. 31, 2024

Chemical control methods to prevent crop damage have long been directly implicated in the selection of lepidoptera insect populations resistant insecticides. More recently, new products featuring different modes action (MoA), developed mitigate negative effects management on both producers and environment, are rapidly losing efficacy due emergence insects. Among these, certain resistances associated with molecular changes genomes pest insects that valuable for developing markers diagnostic tools, particularly point mutations. Molecular diagnosis represents an innovative solution insecticide resistance (IRM) practices, allowing effective monitoring resistance. This approach facilitates decision making by enabling timely alternation between (MoAs). In this context, review focuses major lepidopteran pests affect globally significant crops, discussing impacts It gathers literature methods; provides a comparative overview advantages techniques terms efficiency, cost, precision, sensitivity, applicability; highlights several novel tools. Additionally, explores coffee leaf miner, Leucoptera coffeella, as applied model illustrate potential approaches more sustainable strategies.

Language: Английский

Citations

0

Integrative Approach to Gene Expression Data Analysis: Combining Biclustering Techniques with Gene Ontology DOI
Sergii Babichev,

Oleg Yarema,

Igor Liakh

et al.

Lecture notes on data engineering and communications technologies, Journal Year: 2024, Volume and Issue: unknown, P. 149 - 177

Published: Jan. 1, 2024

Language: Английский

Citations

0