Genome-wide identification of the P4ATPase gene family and its response to biotic and abiotic stress in soybean (Glycine max L.) DOI Creative Commons
Jingjing Wei, Gaoyang Zhang,

Huanhuan Lv

et al.

BMC Genomics, Journal Year: 2025, Volume and Issue: 26(1)

Published: March 20, 2025

Soybean is an important legume crop and has significant agricultural economic value. P4-ATPases (aminophospholipid ATPases, ALAs), one of the classes P-type can transport or flip phospholipids across membranes, creating maintaining lipid asymmetry playing crucial roles in plant growth development. To date, however, ALA gene family its expression patterns under abiotic biotic stresses have not been studied soybean genome. A total 27 GmALA genes were identified genome these unevenly distributed on 15 chromosomes classified into five groups based phylogenetic analysis. The GmALAs had diverse intron–exon a highly conserved motif distribution. eight domains found GmALAs, all PhoLip_ATPase_C, phosphorylation transmembrane domains. Cis-acting elements promoter demonstrated that are associated with cellular development, phytohormones, environmental stress photoresponsiveness. Analysis duplication events revealed 24 orthologous pairs synteny analysis greater collinearity AtALAs than OsALAs. Evolutionary constraint analyses suggested undergone strong selective pressure for purification during evolution soybeans. Tissue-specific profiles differentially expressed roots, stems, seeds, flowers, nodules leaves. pattern appeared to be different developmental tissues. Combined transcriptome qRT-PCR data confirmed differential (dehydration, saline, low temperature, ozone, light, wounding phytohormones) (aphid, fungi, rhizobia rust pathogen). In summary, genome-wide identification evolutionary conducted. Our work provides theoretical basis further understanding biological functional studies.

Language: Английский

Genome-wide identification of the P4ATPase gene family and its response to biotic and abiotic stress in soybean (Glycine max L.) DOI Creative Commons
Jingjing Wei, Gaoyang Zhang,

Huanhuan Lv

et al.

BMC Genomics, Journal Year: 2025, Volume and Issue: 26(1)

Published: March 20, 2025

Soybean is an important legume crop and has significant agricultural economic value. P4-ATPases (aminophospholipid ATPases, ALAs), one of the classes P-type can transport or flip phospholipids across membranes, creating maintaining lipid asymmetry playing crucial roles in plant growth development. To date, however, ALA gene family its expression patterns under abiotic biotic stresses have not been studied soybean genome. A total 27 GmALA genes were identified genome these unevenly distributed on 15 chromosomes classified into five groups based phylogenetic analysis. The GmALAs had diverse intron–exon a highly conserved motif distribution. eight domains found GmALAs, all PhoLip_ATPase_C, phosphorylation transmembrane domains. Cis-acting elements promoter demonstrated that are associated with cellular development, phytohormones, environmental stress photoresponsiveness. Analysis duplication events revealed 24 orthologous pairs synteny analysis greater collinearity AtALAs than OsALAs. Evolutionary constraint analyses suggested undergone strong selective pressure for purification during evolution soybeans. Tissue-specific profiles differentially expressed roots, stems, seeds, flowers, nodules leaves. pattern appeared to be different developmental tissues. Combined transcriptome qRT-PCR data confirmed differential (dehydration, saline, low temperature, ozone, light, wounding phytohormones) (aphid, fungi, rhizobia rust pathogen). In summary, genome-wide identification evolutionary conducted. Our work provides theoretical basis further understanding biological functional studies.

Language: Английский

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