Genomic Selection for Phenotype Prediction in Rice DOI

Sakthi Anand Muthazhagu Kuppuraj,

Bharathi Raja Ramadoss, Adhimoolam Karthikeyan

et al.

Published: Jan. 1, 2024

Language: Английский

Genome‐wide associated study identifies FtPMEI13 gene conferring drought resistance in Tartary buckwheat DOI
Jiayue He, Yanrong Hao, Yuqi He

et al.

The Plant Journal, Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 3, 2024

SUMMARY Tartary buckwheat is known for its ability to adapt intricate growth conditions and possess robust stress‐resistant properties. Nevertheless, it remains vulnerable drought stress, which can lead reduced crop yield. To identify potential genes involved in resistance, a genome‐wide association study on tolerance germplasm was conducted. A gene encoding pectin methylesterase inhibitors protein ( FtPMEI13 ) identified, not only associated with but also showed induction during stress abscisic acid (ABA) treatment. Further analysis revealed that overexpression of leads improved by altering the activities antioxidant enzymes levels osmotically active metabolites. Additionally, interacts (PME) inhibits PME activity response stress. Our results suggest may inhibit FtPME44/FtPME61, thereby affecting methylesterification cell wall modulating stomatal closure Yeast one‐hybrid, dual‐luciferase assays, electrophoretic mobility shift assays demonstrated an ABA‐responsive transcription factor FtbZIP46 , could bind promoter, enhancing expression. indicated accessions genotype resulting higher expression exhibited compared others. This suggests this has application breeding. Furthermore, natural variation responsible decreased domestication. Taken together, these provide basic support breeding tolerance.

Language: Английский

Citations

4

Translational Research Progress and Challenges for Developing Drought Resilient Rice DOI Creative Commons
Dinesh Kumar Saini, Kirti Bardhan, Impa M. Somayanda

et al.

Plant Stress, Journal Year: 2025, Volume and Issue: unknown, P. 100751 - 100751

Published: Jan. 1, 2025

Language: Английский

Citations

0

Drought’s physiological footprint: implications for crop improvement in rice DOI

S. D. Sagar,

R. Pushpam, Suresh S. Ramalingam

et al.

Molecular Biology Reports, Journal Year: 2025, Volume and Issue: 52(1)

Published: March 10, 2025

Language: Английский

Citations

0

Identifying Heat Adaptability QTLs and Candidate Genes for Grain Appearance Quality at the Flowering Stage in Rice DOI Creative Commons
Lei Chen, Weiwei Chen, Jin Li

et al.

Rice, Journal Year: 2025, Volume and Issue: 18(1)

Published: March 11, 2025

High temperature significantly impacts grain appearance quality, yet few studies have focused on identifying new quantitative trait loci (QTLs)/genes related to these traits under heat stress during the flowering stage in rice. In this study, a natural population of 525 rice accessions was used identify QTLs and candidate genes associated with quality using Genome-Wide Association Study stress. We identified 25 length (GL), width (GW), chalkiness (GC) across 10 chromosomes three populations (full, indica, japonica). Notably, sets overlapping were (set 1: qHTT-L3 qHTT-XL3; set 2: qHTT-C5 qHTT-XC5; 3: qHTT-L11.1 qHTT-GL11), located 3, 5, 11, respectively. Haplotype analysis indicated that Hap1 is superior haplotype, pyramiding more than two alleles improved (longer GL, wider GW, lower GC) high-temperature environments. Based RNA-seq, qRT-PCR functional annotations analysis, LOC_Os05g06920, LOC_Os05g06970, LOC_Os11g28104 highly expressed, them as high-priority for linked (GL, Expression revealed which encodes relA-SpoT-like protein RSH4, LOC_Os11g28104, kinase DUF26 domain, expressed seeds, leaves, shoots. And encoding peroxidase precursor, exhibited high expression levels roots. Compared wild-type (WT) plants, mutants increased GL length-to-width ratio, but reduced GW both conditions, while LOC_Os05g06970 chalky rate degree conditions. Furthermore, showed decline WT after treatment. These findings suggest play crucial roles regulating development tolerance at anthesis, thus affecting Our results provide promising genetic resource improving

Language: Английский

Citations

0

Genome-wide association analysis in identification of superior haplotypes for vegetative stage drought stress tolerance in rice DOI

Gyanisha Nayak,

C. Parameswaran,

Nairita Vaidya

et al.

Physiology and Molecular Biology of Plants, Journal Year: 2025, Volume and Issue: unknown

Published: March 23, 2025

Language: Английский

Citations

0

Mechanisms underpinning cold tolerance in indica hybrid rice: Insights for northern adaptation DOI
Di Zhang,

Xiaoping Ding,

Wenyu Li

et al.

Gene Reports, Journal Year: 2025, Volume and Issue: unknown, P. 102201 - 102201

Published: March 1, 2025

Language: Английский

Citations

0

Integration of ATAC-seq and RNA-seq reveals the dynamics of chromatin accessibility and gene expression in zoysiagrass response to drought DOI
Liangying Shen, Zewen Qi, Ye Ai

et al.

Plant Cell Reports, Journal Year: 2025, Volume and Issue: 44(4)

Published: April 1, 2025

Language: Английский

Citations

0

Identification of superior haplotype and haplotype combinations for UV-B stress-related genes in Rice (Oryza sativa L.) DOI
Yuting Zeng,

Dongryung Lee,

Backki Kim

et al.

Plant Biotechnology Reports, Journal Year: 2025, Volume and Issue: unknown

Published: April 4, 2025

Language: Английский

Citations

0

From landraces to haplotypes, exploiting a genomic and phenomic approach to identify heat tolerant genotypes within durum wheat landraces. DOI Creative Commons

Palermo Nadia,

Buffagni Valentina,

Filippο Vurro

et al.

Environmental and Experimental Botany, Journal Year: 2024, Volume and Issue: unknown, P. 105986 - 105986

Published: Oct. 1, 2024

Language: Английский

Citations

1

Haplotype-Assisted Breeding in Rice DOI

U. S. Sree Vathsa Sagar,

R. Pushpam, M. Raveendran

et al.

Published: Jan. 1, 2024

Language: Английский

Citations

1