Push–Pull and Conventional Nitriles as Halogen Bond Acceptors in Their Cocrystals with Iodo-Substituted Perfluorobenzenes DOI

Yulia N. Toikka,

Rosa M. Gomila, Antonio Frontera

et al.

Crystal Growth & Design, Journal Year: 2023, Volume and Issue: 23(11), P. 8333 - 8341

Published: Oct. 9, 2023

Co-crystallization of the push–pull nitriles NCNR2 (R2 = Me2 1, C4H8 2, C5H10 3, and C4H8O 4) with iodo-substituted perfluorobenzenes (1,4-diiodotetrafluorobenzene − 1,4-FIB 1,3,5-triiodotrifluorobenzene 1,3,5-FIB) gave cocrystals 1·1,3,5-FIB, 2·1,3,5-FIB, 3·1/2(1,4-FIB), 4·1/2(1,4-FIB), 4·2(1,3,5-FIB), which were studied by single-crystal X-ray diffractometry (XRD). The structure-directing I···sp-Nnitrile halogen bond (HaB) in all was identified based on consideration XRD geometrical (bond length angles) parameters also Hirshfeld surface analysis, whereupon observed HaBs analyzed theoretically. HaB-accepting role push–pulling dialkylcyanamides conventional NCR (R Alk) examined compared detail using, as model examples, structures 3·1/2(1,4-FIB) (this work) AdCN·1/2(1,4-FIB) (CSD refcode: KIHROL). These two cocrystals, display similar supramolecular organization, several quantum chemistry methods including molecular electrostatic potential natural orbital theory atoms molecules combined NCIPlot approach, Kitaura–Morokuma energy decomposition approach. While AdCN is a slightly poorer sp-N electron donor than nitrile exhibit interaction energies. Although covalent types often strikingly different reactivity patterns, σ-hole-based noncovalent provided leveling effect, resulting significant similarities between HaB situations for both species.

Language: Английский

Halogen Bond via an Electrophilic π-Hole on Halogen in Molecules: Does It Exist? DOI Open Access
Pradeep R. Varadwaj

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(9), P. 4587 - 4587

Published: April 23, 2024

This study reveals a new non-covalent interaction called π-hole halogen bond, which is directional and potentially non-linear compared to its sister analog (σ-hole bond). A shown here be observed on the surface of in halogenated molecules, can tempered display aptness form bond with series electron density-rich sites (Lewis bases) hosted individually by 32 other partner molecules. The [MP2/aug-cc-pVTZ] level characteristics bonds 33 binary complexes obtained from charge density approaches (quantum theory intramolecular atoms, molecular electrostatic potential, independent gradient model (IGM-δginter)), intermolecular geometries energies, second-order hyperconjugative transfer analyses are discussed, similar interactions. That molecules substantiated experimentally reported crystals documented Cambridge Crystal Structure Database. importance design growth chemical systems synthetic chemistry, crystallography, crystal engineering yet fully explicated.

Language: Английский

Citations

5

Halogen Bonds Formed by Halogen’s p/π-Hole in Molecules Help Shape Crystalline Materials DOI
Pradeep R. Varadwaj, Helder M. Marques, Ireneusz Grabowski

et al.

Crystal Growth & Design, Journal Year: 2025, Volume and Issue: unknown

Published: April 24, 2025

Language: Английский

Citations

0

Pnictogen Bond-Mediated Coassemblies for Noncovalent Molecular Glass DOI
Xiong Zhou,

Aiyou Hao,

Pengyao Xing

et al.

Nano Letters, Journal Year: 2025, Volume and Issue: 25(2), P. 905 - 913

Published: Jan. 7, 2025

Pnictogen bond (PnB) occurring on the group-15 elements is recognized as σ- or π-hole-based interaction that has garnered attention in fields of anion recognition and organocatalysis. Due to polyvalent feature pnictogens high directionality, PnB possesses potential design convergent coassembled materials with acceptors containing lone pair electrons anions, which however rarely explored so far. Herein, we unveil role antimony (Sb)-based donors producing self-assembled chiroptical electron acceptors. Steric effect electronic properties determined exposure strength σ-holes direct complexation between components. leads profound property self-assembly behavior evolutions compared pristine assembly, including crystallinity, photophysical, morphological, properties. The complexes exhibited an accelerated photoisomerization. Ascribed multiple Sb donors, amorphous structures were generated, enabling formation glassy materials.

Language: Английский

Citations

0

π-Hole interactions of group III-VIII elements-bearing dimers and trimers: a comprehensive ab initio study DOI
Mahmoud A. A. Ibrahim,

Karolen B. N. Gendy,

Rehab R. A. Saeed

et al.

Chemical Papers, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 12, 2025

Language: Английский

Citations

0

Theoretical Study on Interaction of Fluorine‐Containing Compounds Involving the Fourth Period Metal Elements With N‐base: Comparison With Halogen Bonds DOI Open Access
Hao Yu, Qibo Zhao, Kunhua Wang

et al.

ChemistrySelect, Journal Year: 2025, Volume and Issue: 10(5)

Published: Feb. 1, 2025

Abstract The fourth period metal fluorides acting as a Lewis acid form binary compounds with nitrogen‐containing bases (HCN, NHCH 2 , and NH 3 ), which the calculations are carried out at MP2 ab initio level AVTZ AVQZ basis set employed by CBS method. AIM IGMH analyses further indicate that metal‐N‐bases (M─N) bonding exists in complexes. strength of interactions is ranging from −4.76 to −56.54 kcal/mol. M─N exhibits partially covalent nature characterized negative energy density large interaction energy. With decrease electronegativity substituents on base, energies increase. dominated electrostatic all complexes, whereas induction dispersion cannot be ignored either.

Language: Английский

Citations

0

Progress in the understanding of traditional and nontraditional molecular interactions DOI
Robin Taylor, Jason C. Cole

Elsevier eBooks, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

Language: Английский

Citations

0

Yet another perspective on hole interactions, part II: lp-hole vs. lp-hole interactions DOI
Rahul Shukla, Dongkun Yu, Tiancheng Mu

et al.

Physical Chemistry Chemical Physics, Journal Year: 2023, Volume and Issue: 25(18), P. 12641 - 12649

Published: Jan. 1, 2023

lp-holes definitely exist, but do they really interact with nucleophiles to form lp-hole interactions?

Language: Английский

Citations

9

A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds DOI Creative Commons
M. Carla Aragoni, Massimiliano Arca, Vito Lippolis

et al.

Molecules, Journal Year: 2023, Volume and Issue: 28(7), P. 3133 - 3133

Published: March 31, 2023

The experimental structural features of chalcogen bonding (ChB) interactions in over 34,000 linear fragments R-Ch⋯A (Ch = S, Se, Te; R C, N, O, A Te, F, Cl, Br, I) were analyzed. bond distances dR-Ch and the interaction dCh⋯A investigated, functions δR-Ch δCh⋯A introduced to compare data involving different Ch atoms. calculated by normalizing differences between relevant ChB with respect sum covalent (rcovR + rcovCh) van der Waals (vdW) radii (rvdWCh rvdWA), respectively. systematic comparison is presented, highlighting role involved, atoms covalently bonded Ch, species playing acceptor. Based on results obtained, an innovative approach proposed for evaluation categorization strength based data.

Language: Английский

Citations

9

Sigma-Hole and Lone-Pair-Hole Site-Based Interactions of Seesaw Tetravalent Chalcogen-Bearing Molecules with Lewis Bases DOI Creative Commons
Mahmoud A. A. Ibrahim, Rehab R. A. Saeed, Mohammed N. I. Shehata

et al.

ACS Omega, Journal Year: 2023, Volume and Issue: 8(36), P. 32828 - 32837

Published: Aug. 30, 2023

For the first time, sigma (σ)- and lone-pair (lp)-hole site-based interactions of SF4 SeF4 molecules in seesaw geometry with NH3 FH Lewis bases were herein comparatively investigated. The obtained findings from electrostatic potential analysis outlined emergence sundry holes on molecular entity molecules, dubbed σ- lp-holes. energetic viewpoint announced splendid negative binding energy values for σ-hole succeeded by lp-hole analogues, which found to be -9.21 -0.50 kcal/mol, respectively, SeF4···NH3 complex as a case study. Conspicuously, proper concurrence between strength chalcogen chalcogen's atomic size was obtained, whereas reverse pattern proclaimed counterparts. Further, higher preference YF4···NH3 complexes elevated promulgated over YF4···FH ones, indicating eminent role basicity. indications quantum theory atoms generally asserted closed-shell nature all considered interactions. observation symmetry-adapted perturbation revealed substantial contributing forces beyond occurrence In comparison, dispersion specified govern Such emerging would gate fruitful forthcoming applications bonding crystal engineering biological systems.

Language: Английский

Citations

8

π-Hole Halogen Bonds Are Sister Interactions to σ-Hole Halogen Bonds DOI
Pradeep R. Varadwaj, Helder M. Marques, Arpita Varadwaj

et al.

Crystal Growth & Design, Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 9, 2024

Citations

2