Journal of Biomolecular Structure and Dynamics,
Journal Year:
2022,
Volume and Issue:
41(16), P. 8042 - 8052
Published: Oct. 2, 2022
Cyclin-dependent
kinase
5
(CDK5)
is
a
proline-directed
serine-threonine
protein
vital
for
neuronal
cell
cycle
arrest
and
differentiation.
It
activates
by
binding
with
p35
p39
important
the
functioning
of
nervous
system.
A
growing
body
evidence
suggests
that
CDK5
contributes
to
onset
progression
neurodegeneration
tumorigenesis
represents
itself
as
potential
therapeutic
target.
Our
research
illustrates
virtual
screening
phytochemicals
from
IMPPAT
(Indian
Medicinal
Plants,
Phytochemistry
Therapeutics)
library
search
inhibitors
CDK5.
Initially,
compounds
parent
were
filtered
out
via
their
physicochemical
properties
following
Lipinski
rule
five.
Then
sequentially,
molecular
docking-based
screening,
PAINS
filter,
ADMET,
PASS
analysis,
dynamics
(MD)
simulation
done
using
various
computational
tools
adversities
can
cause
hindrances
in
identification
Finally,
two
selected
extensive
showing
significant
ATP-binding
pocket
ultimately
potent
ATP-competitive
we
propose
elucidated
Desmodin
Isopongachromene
be
used
further
drug
discovery
process
act
therapeutics
medical
industry
treat
certain
complex
diseases,
including
cancer
neurodegeneration.Communicated
Ramaswamy
H.
Sarma.
ACS Sensors,
Journal Year:
2023,
Volume and Issue:
8(4), P. 1391 - 1403
Published: March 20, 2023
Neurotransmitters
act
as
chemical
messengers,
determining
human
physiological
and
psychological
function,
abnormal
levels
of
neurotransmitters
are
related
to
conditions
such
Parkinson's
Alzheimer's
disease.
Biologically
clinically
relevant
concentrations
usually
very
low
(nM),
so
electrochemical
electronic
sensors
for
neurotransmitter
detection
play
an
important
role
in
achieving
sensitive
selective
detection.
Additionally,
these
have
the
distinct
advantage
potentially
be
wireless,
miniaturized,
multichannel,
providing
remarkable
opportunities
implantable,
long-term
sensing
capabilities
unachievable
by
spectroscopic
or
chromatographic
methods.
In
this
article,
we
will
focus
on
advances
development
characterization
during
last
five
years,
identifying
how
field
is
progressing
well
critical
knowledge
gaps
sensor
researchers.
Scientific Reports,
Journal Year:
2022,
Volume and Issue:
12(1)
Published: Oct. 21, 2022
Abstract
Chronic
lymphocytic
leukemia
(CLL)
is
an
incurable
malignancy
of
B-cells.
In
this
study,
bioinformatics
analyses
were
conducted
to
identify
possible
pathogenic
roles
CK2α,
which
a
protein
encoded
by
CSNK2A1
,
in
the
progression
and
aggressiveness
CLL.
Furthermore,
various
computational
tools
used
search
for
competent
inhibitor
CK2α
from
fungal
metabolites
that
could
be
proposed
CLL
therapy.
patients,
high-expression
was
associated
with
early
need
therapy
(n
=
130,
p
<
0.0001)
short
overall
survival
(OS;
n
107,
0.005).
Consistently,
showed
associate
with/play
proliferation
survival-dependent
pathways.
PPI
network
analysis
identified
interaction
partners
(PPI
enrichment
value
1
×
10
–16
)
0.003)
have
been
known
heavily
impact
on
These
findings
constructed
rational
targeting
Consequently,
reported
35
out
5820
(filtered
19,967
metabolites)
lower
binding
energy
(ΔG:
−
10.9
11.7
kcal/mol)
better
affinity
(Kd:
9.77
7
M
−1
3.77
8
compared
native
ligand
10.8,
Kd:
8.3
M−
).
molecular
dynamics
simulation
study
established
Butyl
Xanalterate-CK2α
complex
continuously
remained
stable
throughout
time
(100
ns).
Moreover,
Xanalterate
interacted
most
catalytic
residues,
where
stabilized
more
than
65%
hydrogen
bond
interactions,
significant
hydrophobic
residue
Phe113.
Here,
implicated
poor
prognosis
CLL,
making
it
potential
therapeutic
target
disease.
strong
interactions
thus
we
propose
as
competitive
ACS Omega,
Journal Year:
2023,
Volume and Issue:
8(7), P. 6423 - 6430
Published: Feb. 7, 2023
Type
2
diabetes
mellitus
(T2DM)
and
Alzheimer's
disease
(AD)
are
significant
public
health
burdens.
Many
studies
have
revealed
the
possibility
of
common
pathophysiology
between
T2DM
AD.
Thus,
in
recent
years,
deciphering
action
mechanism
anti-diabetic
drugs
with
their
future
use
AD
related
pathologies
on
high
demand.
Drug
repurposing
is
a
safe
effective
approach
owing
to
its
low
cost
time-saving
attributes.
Microtubule
affinity
regulating
kinase
4
(MARK4)
druggable
target
for
various
diseases
found
be
linked
mellitus.
MARK4
plays
vital
role
energy
metabolism
regulation
thus
serves
as
an
irrefutable
treat
T2DM.
The
present
study
was
intended
identify
potent
inhibitors
among
FDA-approved
drugs.
We
performed
structure-based
virtual
screening
top
hits
against
MARK4.
identified
five
having
appreciable
specificity
toward
binding
pocket
Among
these
hits,
two
drugs,
linagliptin,
empagliflozin,
favorably
bind
pocket,
interacting
critical
residues
subjected
detailed
analysis.
All-atom
molecular
dynamics
(MD)
simulations
linagliptin
empagliflozin
Kinase
assay
showed
inhibition
activity
presence
implying
them
inhibitors.
In
conclusion,
may
promising
inhibitors,
which
can
further
exploited
potential
lead
molecules
MARK4-directed
neurodegenerative
diseases.
Analytical Chemistry,
Journal Year:
2023,
Volume and Issue:
95(5), P. 2639 - 2644
Published: Jan. 27, 2023
Investigating
the
interactions
between
small,
charged
molecules
and
aptamers
using
surface
plasmon
resonance
(SPR)
is
limited
by
inherent
low
response
of
small
difficulties
with
nonspecific
electrostatic
aptamer,
analyte,
sensor
surface.
However,
are
increasingly
being
used
in
sensors
for
molecule
detection
critical
areas
like
healthcare
environmental
safety.
The
ability
to
probe
these
through
simple,
direct
SPR
assays
would
be
greatly
beneficial
allow
development
improved
without
need
complicated
signal
enhancement.
nearly
nonexistent
current
literature
instead
surpassed
sandwich
or
competitive
binding
techniques,
which
require
additional
sample
preparation
reagents.
In
this
work,
we
develop
a
method
characterize
interaction
serotonin
(176
Da)
an
aptamer
streptavidin–biotin
capture
high-ionic-strength
buffer.
Additionally,
other
methods,
such
as
immobilization
thiol-coupling
were
investigated
comparison.
These
techniques
give
insight
into
working
quickly
adapting
affinity
assay
sensor.
Food & Function,
Journal Year:
2024,
Volume and Issue:
15(4), P. 1803 - 1824
Published: Jan. 1, 2024
The
effects
of
dietary
lipids
on
cognition,
both
positive
and
negative,
are
mediated
through
the
gut–brain
axis
by
modulating
metabolic,
immune,
neural,
endocrine
pathways.
Frontiers in Medicine,
Journal Year:
2025,
Volume and Issue:
12
Published: March 19, 2025
Introduction
Alzheimer’s
disease
(AD)
is
a
neurodegenerative
disorder
that
progressively
affects
the
cognitive
function
and
memory
of
affected
person.
Unfortunately,
only
handful
effective
prevention
or
treatment
options
are
available
today.
Microtubule
affinity-regulating
kinase
4
(MARK4)
serine/threonine
protein
plays
critical
role
in
regulating
microtubule
dynamics
facilitating
cell
division.
The
dysregulated
expression
MARK4
has
been
associated
with
range
diseases,
including
AD.
Methods
In
this
study,
we
synthesized
series
N
-hetarenes
via
Pd(0)-catalyzed
Suzuki-Miyaura
cross
coupling
reaction.
All
compounds
were
characterized
using
multi-spectroscopic
techniques
evaluated
for
their
activity
against
enzyme
through
ATPase
inhibition
assays.
experimental
data
was
further
supported
by
computational
quantum
chemical
calculations.
We
also
computed
drug-likeness,
bioavailability,
toxicity
(ADME/T)
profiles
compounds.
Results
Six
new
4-(6-(arylpyrimidin-4-yl)piperazine-1-carboximidamides
5−10
prepared
good
yields.
assay
conducted
on
these
demonstrated
IC
50
values
micromolar
(5.35
±
0.22
to
16.53
1.71
μM).
Among
tested
compounds,
4-(6-(
p
-tolyl)pyrimidin-4-yl)piperazine-1-carboximidamide
(
5
;
=
5.35
μM)
4-(6-(benzo[
b
]thiophen-2-yl)pyrimidin-4-yl)piperazine-1-carboximidamide
9
6.68
0.80
showed
best
activity.
binding
constant
K
),
as
determined
fluorescence
quenching
estimated
be
1.5
0.51
×
10
M
−1
1.14
0.26
.
results
molecular
docking
MD
simulation
studies
(PDB:
5ES1)
indicated
able
bind
ATP
pocket
MARK4,
leading
its
stabilization.
Additionally,
ADME/T
analysis
revealed
high
degree
drug-likeness
Conclusion
4-(6-(arylpyrimidin-4-yl)piperazine-1-carboximidamides)
promising
class
developing
next-generation
anti-AD
drugs.
reported
inhibited
in-vitro
at
concentration
targeting
ATP-binding
pocket.
These
findings
provide
valuable
insights
future
drug
design.