Clinical Cancer Research,
Journal Year:
2023,
Volume and Issue:
30(4), P. 836 - 848
Published: Dec. 7, 2023
Abstract
Purpose:
Genomic
rearrangements
can
generate
potent
oncogenic
drivers
or
disrupt
tumor
suppressor
genes.
This
study
examines
the
landscape
of
fusions
and
detected
by
liquid
biopsy
(LBx)
circulating
DNA
(ctDNA)
across
different
cancer
types.
Experimental
Design:
LBx
from
53,842
patients
with
66
solid
types
were
profiled
using
FoundationOneLiquid
CDx,
a
hybrid-capture
sequencing
platform
that
queries
324
cancer-related
Tissue
biopsies
(TBx)
FoundationOneCDx
used
as
comparator.
Results:
Among
all
LBx,
7,377
(14%)
had
≥1
pathogenic
rearrangement
detected.
A
total
3,648
(6.8%)
gain-of-function
(GOF)
oncogene
rearrangement,
4,428
(8.2%)
loss-of-function
Cancer
higher
prevalence
GOF
included
those
canonical
fusion
drivers:
prostate
(19%),
cholangiocarcinoma
(6.4%),
bladder
(5.5%),
non–small
cell
lung
(4.4%).
Although
driver
was
lower
in
than
TBx
overall,
frequency
detection
comparable
fraction
(TF)
≥1%.
Rearrangements
FGFR2,
BRAF,
RET,
ALK,
types,
but
tended
to
be
clonal
variants
some
potential
acquired
resistance
others.
Conclusions:
In
contrast
prior
literature,
this
reports
wide
variety
ctDNA.
The
tissue
when
TF
presents
viable
alternative
is
not
available,
there
may
less
value
confirmatory
testing
sufficient.
Cancers,
Journal Year:
2023,
Volume and Issue:
15(13), P. 3312 - 3312
Published: June 23, 2023
Biliary
tract
cancers
(BTCs),
comprising
intrahepatic,
perihilar,
and
distal
cholangiocarcinoma
as
well
gallbladder
adenocarcinoma,
continue
to
be
challenging
manage.
Conventional
chemotherapy
regimens
for
advanced
disease
are
limited
in
both
options
benefits,
more
effective
perioperative
also
needed.
Over
the
last
decade,
immunotherapy
has
had
a
profound
impact
on
management
of
many
solid
tumor
types,
particularly
using
immune
checkpoint
inhibition
enable
tumor-directed
T
cell
response.
Immunotherapy
administered
its
own
utility
BTCs,
part
due
hostile
microenvironment
relative
infrequency
biomarker-based
tumor-agnostic
indications
immunotherapy.
However,
conjunction
with
chemotherapy,
molecularly
targeted
therapies,
and/or
anti-angiogenic
therapies
gained
traction,
supported
by
evidence
that
these
agents
can
impart
favorable
immunomodulatory
effects
microenvironment.
The
TOPAZ-1
trial
led
first
BTC-specific
approval,
establishing
combination
durvalumab
gemcitabine
cisplatin
preferred
first-line
treatment
or
metastatic
disease.
Recently,
KEYNOTE-966
showed
positive
results
pembrolizumab
same
setting,
adding
further
addition
standard
backbone.
Meanwhile,
advances
molecular
profiling
BTCs
contributed
recent
proliferation
therapeutics
subset
harboring
alterations
Nature Communications,
Journal Year:
2023,
Volume and Issue:
14(1)
Published: Dec. 14, 2023
Abstract
Primary
liver
cancer
arises
either
from
hepatocytic
or
biliary
lineage
cells,
giving
rise
to
hepatocellular
carcinoma
(HCC)
intrahepatic
cholangiocarcinoma
(ICCA).
Combined
hepatocellular-
cholangiocarcinomas
(cHCC-CCA)
exhibit
equivocal
mixed
features
of
both,
causing
diagnostic
uncertainty
and
difficulty
in
determining
proper
management.
Here,
we
perform
a
comprehensive
deep
learning-based
phenotyping
multiple
cohorts
patients.
We
show
that
learning
can
reproduce
the
diagnosis
HCC
vs.
CCA
with
high
performance.
analyze
series
405
cHCC-CCA
patients
demonstrate
model
reclassify
tumors
as
ICCA,
predictions
are
consistent
clinical
outcomes,
genetic
alterations
situ
spatial
gene
expression
profiling.
This
type
approach
could
improve
treatment
decisions
ultimately
outcome
for
rare
biphenotypic
cancers
such
cHCC-CCA.
Cancers,
Journal Year:
2023,
Volume and Issue:
15(4), P. 1244 - 1244
Published: Feb. 15, 2023
Cholangiocarcinoma
(CCA)
is
a
neoplasm
with
high
mortality
that
represents
15%
of
all
primary
liver
tumors.
Its
worldwide
incidence
on
the
rise,
and
despite
important
advances
in
knowledge
molecular
mechanisms,
diagnosis,
treatment,
overall
survival
has
not
substantially
improved
last
decade.
Surgical
resection
remains
cornerstone
therapy
for
CCA.
Unfortunately,
complete
only
possible
less
than
15-35%
cases,
risk
recurrence
greater
60%.
Liver
transplantation
(LT)
been
postulated
as
an
effective
therapeutic
strategy
those
intrahepatic
CCA
(iCCA)
smaller
3
cm.
However,
low
rate
early
diagnosis
non-resectable
patients
justifies
applicability
clinical
practice.
The
evidence
regarding
LT
locally
advanced
iCCA
scarce
based
small,
retrospective,
and,
most
single-center
case
series.
In
this
setting,
response
to
neoadjuvant
chemotherapy
could
be
useful
identifying
subgroup
biologically
aggressive
tumors
whom
may
successful.
results
pCCA
are
promising,
however,
we
need
very
careful
selection
adequate
experience
transplant
center.
Locoregional
therapies
relevant
unresectable,
liver-only
2
cm,
particularly
arising
chronic
disease
or
feasible,
thermal
ablation
become
reliable
alternative.
greatest
management
occur
systemic
treatment.
Immunotherapy
associated
emerged
gold
standard
first-line
Likewise,
encouraging
have
obtained
targeted
therapies,
where
use
personalized
treatments
shown
rates
objective
durable
tumor
response,
clear
signs
benefit.
conclusion,
future
treatment
seems
marked
by
development
new
strategies
but
high-quality,
prospective
studies
shed
light
their
mandatory.
Cancers,
Journal Year:
2023,
Volume and Issue:
15(18), P. 4446 - 4446
Published: Sept. 6, 2023
Biliary
tract
cancers
(BTCs)
are
rare
tumours,
most
often
diagnosed
at
an
unresectable
stage,
associated
with
poor
prognosis,
a
5-year
survival
rate
not
exceeding
10%.
Only
first-
and
second-line
treatments
well
codified
the
combination
of
cisplatin-gemcitabine
chemotherapy
immunotherapy
followed
by
5-FU
oxaliplatin
chemotherapy,
respectively.
Many
studies
have
shown
that
BTC,
more
particularly
intrahepatic
cholangiocarcinoma
(iCCA),
high
targetable
somatic
alteration.
To
date,
FDA
has
approved
several
drugs.
Ivosidenib
targeting
IDH1
mutations,
as
futibatinib
pemigatinib
FGFR2
fusions,
for
pre-treated
advanced
CCA.
The
dabrafenib
trametinib
BRAFV600E
mutated
NTRK
inhibitors
entrectinib
larotrectinib
tumours
bearing
fusion
prembrolizumab
MSI-H
involving
small
percentage
BTC
in
these
three
settings.
Several
other
potentially
alterations
found
such
HER2
mutations
or
amplifications
KRASG12C
genes
involved
DNA
repair
mechanisms.
This
review
aims
to
clarify
specific
diagnostic
modalities
gene
summarize
results
main
trials
developments
underway
management
alterations.
Clinical Cancer Research,
Journal Year:
2023,
Volume and Issue:
30(4), P. 836 - 848
Published: Dec. 7, 2023
Abstract
Purpose:
Genomic
rearrangements
can
generate
potent
oncogenic
drivers
or
disrupt
tumor
suppressor
genes.
This
study
examines
the
landscape
of
fusions
and
detected
by
liquid
biopsy
(LBx)
circulating
DNA
(ctDNA)
across
different
cancer
types.
Experimental
Design:
LBx
from
53,842
patients
with
66
solid
types
were
profiled
using
FoundationOneLiquid
CDx,
a
hybrid-capture
sequencing
platform
that
queries
324
cancer-related
Tissue
biopsies
(TBx)
FoundationOneCDx
used
as
comparator.
Results:
Among
all
LBx,
7,377
(14%)
had
≥1
pathogenic
rearrangement
detected.
A
total
3,648
(6.8%)
gain-of-function
(GOF)
oncogene
rearrangement,
4,428
(8.2%)
loss-of-function
Cancer
higher
prevalence
GOF
included
those
canonical
fusion
drivers:
prostate
(19%),
cholangiocarcinoma
(6.4%),
bladder
(5.5%),
non–small
cell
lung
(4.4%).
Although
driver
was
lower
in
than
TBx
overall,
frequency
detection
comparable
fraction
(TF)
≥1%.
Rearrangements
FGFR2,
BRAF,
RET,
ALK,
types,
but
tended
to
be
clonal
variants
some
potential
acquired
resistance
others.
Conclusions:
In
contrast
prior
literature,
this
reports
wide
variety
ctDNA.
The
tissue
when
TF
presents
viable
alternative
is
not
available,
there
may
less
value
confirmatory
testing
sufficient.