Journal of Computational Chemistry,
Journal Year:
2021,
Volume and Issue:
42(32), P. 2341 - 2351
Published: Oct. 9, 2021
Abstract
A
fast
and
multipurpose
energy
decomposition
analysis
(EDA)
program,
called
XEDA,
is
introduced
for
quantitative
of
intermolecular
interactions.
This
program
contains
a
series
variational
EDA
methods,
including
LMO‐EDA,
GKS‐EDA
their
extensions,
to
analyze
non‐covalent
interactions
strong
chemical
bonds
in
various
environments.
XEDA
highly
efficient
with
similar
computational
scaling
single
point
calculations.
Its
efficiency
universality
are
validated
by
test
examples
van
der
Waals
interactions,
hydrogen
bonds,
radical–radical
covalent
bonds.
The Journal of Physical Chemistry Letters,
Journal Year:
2020,
Volume and Issue:
11(19), P. 8208 - 8215
Published: Sept. 2, 2020
The
recently
proposed
rSCAN
functional
[
J.
Chem.
Phys.
2019
150,
161101]
is
a
regularized
form
of
the
SCAN
Rev.
Lett.
2015
115,
036402]
that
improves
SCAN's
numerical
performance
at
expense
breaking
constraints
known
from
exact
exchange-correlation
functional.
We
construct
new
meta-generalized
gradient
approximation
by
restoring
constraint
adherence
to
rSCAN.
resulting
maintains
rSCAN's
while
transferable
accuracy
SCAN.
Journal of Chemical Theory and Computation,
Journal Year:
2022,
Volume and Issue:
19(20), P. 6891 - 6932
Published: Dec. 11, 2022
The
Crystal
program
for
quantum-mechanical
simulations
of
materials
has
been
bridging
the
realm
molecular
quantum
chemistry
to
solid
state
physics
many
years,
since
its
first
public
version
released
back
in
1988.
This
peculiarity
stems
from
use
atom-centered
basis
functions
within
a
linear
combination
atomic
orbitals
(LCAO)
approach
and
corresponding
efficiency
evaluation
exact
Fock
exchange
series.
In
particular,
this
led
implementation
rich
variety
hybrid
density
functional
approximations
1998.
Nowadays,
it
is
acknowledged
by
broad
community
chemists
physicists
that
inclusion
fraction
exchange-correlation
potential
theory
key
better
description
properties
(electronic,
magnetic,
mechanical,
spintronic,
lattice-dynamical,
etc.).
Here,
main
developments
made
last
five
years
(i.e.,
previous
release,
Crystal17)
are
presented
some
their
most
noteworthy
applications
reviewed.
Chemical Reviews,
Journal Year:
2020,
Volume and Issue:
120(15), P. 7065 - 7103
Published: June 23, 2020
Chemical
shifts
present
crucial
information
about
an
NMR
spectrum.
They
show
the
influence
of
chemical
environment
on
nuclei
being
probed.
Relativistic
effects
caused
by
presence
atom
a
heavy
element
in
compound
can
appreciably,
even
drastically,
alter
nearby
nuclei.
A
fundamental
understanding
such
relativistic
is
important
many
branches
and
physical
science.
This
review
provides
comprehensive
overview
tools,
concepts,
periodic
trends
pertaining
to
shielding
neighboring
diamagnetic
systems,
with
particular
emphasis
"spin-orbit
heavy-atom
effect
light-atom"
shift
(SO-HALA
effect).
The
analyses
tools
described
this
provide
guidelines
help
spectroscopists
computational
chemists
estimate
ranges
for
unknown
compound,
identify
intermediates
catalytic
other
processes,
analyze
conformational
aspects
intermolecular
interactions,
predict
series
compounds
throughout
Periodic
Table.
current
snapshot
subfield
spectroscopy
basis
framework
including
future
findings
field.
Journal of Chemical Theory and Computation,
Journal Year:
2021,
Volume and Issue:
17(2), P. 1117 - 1132
Published: Jan. 25, 2021
Using
a
set
of
oscillator
strengths
and
excited-state
dipole
moments
near
full
configuration
interaction
quality
determined
for
small
compounds,
we
benchmark
the
performances
several
single-reference
wave
function
methods
[CC2,
CCSD,
CC3,
CCSDT,
ADC(2),
ADC(3/2)]
time-dependent
density-functional
theory
(TD-DFT)
with
various
functionals
(B3LYP,
PBE0,
M06-2X,
CAM-B3LYP,
ωB97X-D).
We
consider
impact
gauges
(length,
velocity,
mixed)
formalisms:
equation
motion
versus
linear
response,
relaxed
unrelaxed
orbitals,
so
forth.
Beyond
expected
accuracy
improvements
neat
decrease
formalism
sensitivity
when
using
higher-order
methods,
present
contribution
shows
that,
both
ADC(2)
CC2,
choice
gauge
impacts
more
significantly
magnitude
than
that
CCSD
yields
notable
improvement
on
this
transition
property
as
compared
to
CC2.
For
moments,
switching
orbital
relaxation
appreciably
improves
CC2
but
has
rather
effect
at
level.
Going
from
ground
excited
states,
typical
errors
given
method
tend
roughly
triple.
Interestingly,
ADC(3/2)
dipoles
are
accurate
their
counterparts,
whereas
two
models
do
deliver
similar
absolute
energies.
Concerning
TD-DFT,
one
finds:
(i)
negligible
all
tested
(except
M06-2X);
(ii)
deviations
ca.
0.10
D
ground-state
functionals;
(iii)
strong
differences
between
obtained
with,
hand,
B3LYP
PBE0
and,
other
ωB97X-D,
latter
group
being
markedly
selected
basis
set;
(iv)
better
overall
performance
CAM-B3LYP
considered
properties.
Finally,
investigated
properties,
consistency
second-order
approaches,
not
clearly
outperform
those
hinting
assessing
(or
selecting
specific
functional)
results
former
is
systematically
well-settled
strategy.
Journal of Chemical Theory and Computation,
Journal Year:
2023,
Volume and Issue:
19(20), P. 6859 - 6890
Published: June 29, 2023
TURBOMOLE
is
a
highly
optimized
software
suite
for
large-scale
quantum-chemical
and
materials
science
simulations
of
molecules,
clusters,
extended
systems,
periodic
solids.
uses
Gaussian
basis
sets
has
been
designed
with
robust
fast
applications
in
mind,
ranging
from
homogeneous
heterogeneous
catalysis
to
inorganic
organic
chemistry
various
types
spectroscopy,
light-matter
interactions,
biochemistry.
This
Perspective
briefly
surveys
TURBOMOLE's
functionality
highlights
recent
developments
that
have
taken
place
between
2020
2023,
comprising
new
electronic
structure
methods
molecules
solids,
previously
unavailable
molecular
properties,
embedding,
dynamics
approaches.
Select
features
under
development
are
reviewed
illustrate
the
continuous
growth
program
suite,
including
nuclear
orbital
methods,
Hartree-Fock-based
adiabatic
connection
models,
simplified
time-dependent
density
functional
theory,
relativistic
effects
magnetic
multiscale
modeling
optical
properties.
Journal of Chemical Theory and Computation,
Journal Year:
2021,
Volume and Issue:
17(5), P. 2641 - 2658
Published: April 5, 2021
Quantum
mechanics/molecular
mechanics
(QM/MM)
molecular
dynamics
(MD)
simulations
have
been
developed
to
simulate
systems,
where
an
explicit
description
of
changes
in
the
electronic
structure
is
necessary.
However,
QM/MM
MD
are
computationally
expensive
compared
fully
classical
as
all
valence
electrons
treated
explicitly
and
a
self-consistent
field
(SCF)
procedure
required.
Recently,
approaches
proposed
replace
QM
with
machine
learned
(ML)
models.
condensed-phase
systems
pose
challenge
for
these
due
long-range
interactions.
Here,
we
establish
workflow,
which
incorporates
MM
environment
element
type
high-dimensional
neural
network
potential
(HDNNP).
The
fitted
HDNNP
describes
potential-energy
surface
particles
electrostatic
embedding
scheme.
Thus,
feel
force
from
polarized
particles.
To
achieve
chemical
accuracy,
find
that
even
simple
require
models
strong
gradient
regularization,
large
number
data
points,
substantial
parameters.
address
this
issue,
extend
our
approach
delta-learning
scheme,
ML
model
learns
difference
between
reference
method
(DFT)
cheaper
semi-empirical
(DFTB).
We
show
such
scheme
reaches
accuracy
DFT
method,
while
requiring
significantly
less
Furthermore,
capable
correctly
incorporating
interactions
within
cutoff
1.4
nm.
It
validated
by
performing
retinoic
acid
water
interaction
S-adenoslymethioniat
cytosine
water.
presented
results
indicate
promising
(QM)ML/MM
systems.
Science,
Journal Year:
2021,
Volume and Issue:
374(6569), P. 863 - 867
Published: Nov. 11, 2021
An
anisotropic
charge
distribution
on
individual
atoms,
such
as
σ-holes,
may
strongly
affect
the
material
and
structural
properties
of
systems.
However,
spatial
resolution
distributions
an
atom
represents
a
long-standing
experimental
challenge.
In
particular,
existence
σ-hole
halogen
atoms
has
been
demonstrated
only
indirectly
through
determination
crystal
structures
organic
molecules
containing
halogens
or
with
theoretical
calculations,
consequently
calling
for
its
direct
visualization.
We
show
that
Kelvin
probe
force
microscopy
properly
functionalized
can
image
quadrupolar
carbon
monoxide
molecule.
This
opens
new
way
to
characterize
biological
chemical
systems
in
which
atomic
charges
play
decisive
role.
Journal of the American Chemical Society,
Journal Year:
2022,
Volume and Issue:
144(15), P. 6625 - 6639
Published: April 5, 2022
Density
functional
theory
(DFT)
calculations
have
become
widespread
in
both
chemistry
and
materials,
because
they
usually
provide
useful
accuracy
at
much
lower
computational
cost
than
wavefunction-based
methods.
All
practical
DFT
require
an
approximation
to
the
unknown
exchange-correlation
energy,
which
is
then
used
self-consistently
Kohn–Sham
scheme
produce
approximate
energy
from
density.
Density-corrected
simply
study
of
relative
contributions
total
error.
In
vast
majority
calculations,
error
due
density
negligible.
But
with
certain
classes
functionals
applied
problems,
sufficiently
large
as
contribute
noticeably,
its
removal
leads
better
results.
These
problems
include
reaction
barriers,
torsional
barriers
involving
π-conjugation,
halogen
bonds,
radicals
anions,
most
stretched
etc.
all
such
cases,
use
a
more
accurate
significantly
improves
performance,
often
simple
expedient
using
Hartree–Fock
enough.
This
Perspective
explains
what
DC-DFT
is,
where
it
likely
improve
results,
how
can
functionals.
We
also
outline
challenges
prospects
for
field.