A toolkit for converting Gal4 into LexA and Flippase transgenes inDrosophila DOI Creative Commons
Sasidhar Karuparti,

Ann T. Yeung,

Bei Wang

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2022, Volume and Issue: unknown

Published: Dec. 27, 2022

Abstract Drosophila has been a powerful model system for biological studies due to the wide range of genetic tools established it. Among these tools, Gal4 is most abundant, offering unparalleled tissue- and developmental stage-specificity gene manipulation. In comparison, other reagents are far fewer in choices. Here we present toolkit converting strains into LexA Flippase transgenes through simple crosses fluorescence screening. We demonstrate proof-of-principle by ten lines that exhibit diverse tissue specificities examined activity patterns converted lines. Gal4-to-LexA Flp conversion fast convenient should greatly expand choices binary expression FRT-based mosaic analysis, respectively, .

Language: Английский

Identification of secretory autophagy as a mechanism modulating activity-induced synaptic remodeling DOI
Yen-Ching Chang, Yuan Gao, Joo Yeun Lee

et al.

Proceedings of the National Academy of Sciences, Journal Year: 2024, Volume and Issue: 121(16)

Published: April 8, 2024

The ability of neurons to rapidly remodel their synaptic structure and strength in response neuronal activity is highly conserved across species crucial for complex brain functions. However, mechanisms required elicit coordinate the acute, activity-dependent structural changes synapses are not well understood, as neurodevelopment plasticity tightly linked. Here, using an RNAi screen Drosophila against genes affecting nervous system functions humans, we uncouple cellular processes important synapse development. We find mutations associated with neurodegenerative mental health disorders 2-times more likely affect activity-induced remodeling than report that while both development at fly NMJ require macroautophagy (hereafter referred autophagy), bifurcation autophagy pathway differentially impacts plasticity. demonstrate enhances activation but diminishes degradative autophagy, thereby driving towards autophagy-based secretion. Presynaptic knockdown Snap29, Sec22, or Rab8, proteins implicated secretory pathway, sufficient abolish remodeling. This study uncovers a transsynaptic signaling mechanism modulating

Language: Английский

Citations

15

State-of-the-art CRISPR for in vivo and cell-based studies in Drosophila DOI
Jonathan Zirin, Justin A. Bosch, Raghuvir Viswanatha

et al.

Trends in Genetics, Journal Year: 2021, Volume and Issue: 38(5), P. 437 - 453

Published: Dec. 18, 2021

Language: Английский

Citations

40

Brain-specific lipoprotein receptors interact with astrocyte derived apolipoprotein and mediate neuron-glia lipid shuttling DOI Creative Commons
Jun Yin,

Emma Spillman,

Ethan S. Cheng

et al.

Nature Communications, Journal Year: 2021, Volume and Issue: 12(1)

Published: April 23, 2021

Abstract Lipid shuttling between neurons and glia contributes to the development, function, stress responses of nervous system. To understand how a neuron acquires its lipid supply from specific lipoproteins their receptors, we perform combined genetic, transcriptome, biochemical analyses in developing Drosophila larval brain. Here report, astrocyte-derived secreted lipocalin Glial Lazarillo (GLaz), homolog human Apolipoprotein D (APOD), neuronal receptor, brain-specific short isoforms lipophorin receptor 1 (LpR1-short), cooperatively mediate neuron-glia support dendrite morphogenesis. The isoform specificity LpR1 defines distribution, binding partners, ability proper growth synaptic connectivity. By demonstrating physical functional interactions GLaz/APOD LpR1, elucidate molecular pathways mediating trafficking fly brain, provide vivo evidence indicating isoform-specific expression lipoprotein receptors as key mechanism for regulating cell-type recruitment.

Language: Английский

Citations

35

A toolkit for converting Gal4 into LexA and Flippase transgenes in Drosophila DOI Creative Commons
Sasidhar Karuparti,

Ann T. Yeung,

Bei Wang

et al.

G3 Genes Genomes Genetics, Journal Year: 2023, Volume and Issue: 13(3)

Published: Jan. 6, 2023

Abstract Drosophila has been a powerful model system for biological studies due to the wide range of genetic tools established it. Among these tools, Gal4 is most abundant, offering unparalleled tissue and developmental stage specificity gene manipulation. In comparison, other reagents are far fewer in choices. Here we present toolkit converting strains into LexA Flippase transgenes through simple crosses fluorescence screening. We demonstrate proof-of-principle by ten lines that exhibit diverse specificities examined activity patterns converted lines. Gal4-to-LexA Flp conversion fast convenient should greatly expand choices binary expression FRT-based mosaic analysis, respectively, Drosophila.

Language: Английский

Citations

13

Phagocytosis-driven neurodegeneration through opposing roles of an ABC transporter in neurons and phagocytes DOI Creative Commons
Xinchen Chen, Bei Wang, Ankita Sarkar

et al.

Science Advances, Journal Year: 2025, Volume and Issue: 11(11)

Published: March 12, 2025

Lipid homeostasis is critical to neuronal survival. ATP-binding cassette A (ABCA) proteins are lipid transporters associated with neurodegenerative diseases. How ABCA regulate in neurodegeneration an outstanding question. Here we report that the Drosophila protein engulfment ABC transporter ovary (Eato) regulates phagocytosis-dependent by playing opposing roles neurons and phagocytes: In neurons, Eato prevents dendrites axons from being attacked neighboring phagocytes; phagocytes, sensitizes cell for detecting as targets. Thus, deficiency alone causes neurite degeneration, but additional loss phagocytes suppresses degeneration. Mechanistically, functions removing eat-me signal phosphatidylserine surface both phagocytes. Multiple human worm homologs can rescue not suggesting conserved type–specific activities of proteins. These results imply possible mechanisms neuron-phagocyte interactions

Language: Английский

Citations

0

Future avenues inDrosophilamushroom body research DOI Open Access
Ivy Chi Wai Chan, Nannan Chen, John S. Hernandez

et al.

Learning & Memory, Journal Year: 2024, Volume and Issue: 31(5), P. a053863 - a053863

Published: May 1, 2024

How does the brain translate sensory information into complex behaviors? With relatively small neuronal numbers, readable behavioral outputs, and an unparalleled genetic toolkit, Drosophila mushroom body (MB) offers excellent model to address this question in context of associative learning memory. Recent technological breakthroughs, such as freshly completed full-brain connectome, multiomics approaches, CRISPR-mediated gene editing, machine techniques, led major advancements our understanding MB circuit at molecular, structural, physiological, functional levels. Despite significant progress individual areas, field still faces fundamental challenge resolving how these different levels combine interact ultimately control behavior fly. In review, we discuss various aspects research, with a focus on current knowledge gaps, outlook future methodological developments required reach overall view neurobiological basis

Language: Английский

Citations

3

Tissue-Specific CRISPR-Cas9 Screening in Drosophila DOI Creative Commons
Fillip Port, Michael Boutros

Methods in molecular biology, Journal Year: 2022, Volume and Issue: unknown, P. 157 - 176

Published: Jan. 1, 2022

Abstract Over the last century research in Drosophila has resulted many fundamental contributions to our understanding of biology multicellular organisms. Many these breakthroughs have been based on identification novel gene functions large-scale genetic screens. However, conventional forward-genetic screens limited by random nature mutagenesis and difficulties mapping causal mutations, while reverse-genetic RNAi suffer from incomplete knockdown expression. Recently developed CRISPR-Cas9 libraries promise address limitations allowing induction targeted mutations genes with spatial temporal control. Here, we provide a guide for tissue-specific CRISPR screening , including characterization Gal4 UAS-Cas9 lines, selection sgRNA libraries, various quality control measures. We also discuss confounding factors that can give rise false-positive false-negative results such experiments suggest strategies how detect avoid them. Conditional represents an exciting new approach functional genomics vivo is set further expand knowledge molecular underpinning development, homeostasis, disease.

Language: Английский

Citations

14

Anti-CRISPR Protein AcrIIC5 Inhibits CRISPR-Cas9 by Occupying the Target DNA Binding Pocket DOI Open Access
Sungwon Hwang, Megha Shah,

Bianca Garcı́a

et al.

Journal of Molecular Biology, Journal Year: 2023, Volume and Issue: 435(7), P. 167991 - 167991

Published: Feb. 2, 2023

Language: Английский

Citations

7

Seamless knockins in Drosophila via CRISPR-triggered single-strand annealing DOI Creative Commons
Gustavo Aguilar, Milena Bauer, M Viganò

et al.

Developmental Cell, Journal Year: 2024, Volume and Issue: 59(19), P. 2672 - 2686.e5

Published: July 5, 2024

CRISPR-Cas greatly facilitated the integration of exogenous sequences into specific loci. However, knockin generation in multicellular animals remains challenging, partially due to complexity insertion screening. Here, we describe SEED/Harvest, a method generate knockins Drosophila, based on and single-strand annealing (SSA) repair pathway. In SEED (from "scarless editing by element deletion"), switchable cassette is first integrated target locus. subsequent CRISPR-triggered event, resolved SSA, seamlessly removed. Germline excision cassettes allows for fast robust both fluorescent proteins short protein tags tandem. Tissue-specific expression Cas9 results somatic excision, conferring spatiotemporal control labeling conditional rescue mutants. Finally, achieve manipulation tag knockins, developed genetic toolbox functionalizing ALFA nanobody.

Language: Английский

Citations

2

The Q-system: A Versatile Repressible Binary Expression System DOI

Orsolya Fölsz,

Chun‐Chieh Lin, Darya Task

et al.

Methods in molecular biology, Journal Year: 2022, Volume and Issue: unknown, P. 35 - 78

Published: Jan. 1, 2022

Language: Английский

Citations

8