bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Jan. 25, 2024
Abstract
Yams
(Dioscorea
spp.)
are
a
highly
important
class
of
horticultural
crops,
serving
as
staple
food
for
millions
people
in
Africa
and
contributing
significantly
to
security.
They
also
widely
cultivated
East
Asia
medicinal
herbs,
bringing
substantial
economic
incomes.
Diverse
omics
data
play
pivotal
role
advancing
yam
research
breeding.
However,
these
often
scattered,
lacking
systematic
organization
analysis,
which
underscores
the
need
centralized
comprehensive
management.
In
view
this,
we
gathered
extensive
developed
Yam
Omics
Database
(YamOmics;
https://biotec.njau.edu.cn/yamdb
).
The
database
currently
offers
vast
diverse
range
data,
covering
genomic,
transcriptomic
plastomic
from
41
distinct
species,
along
with
detailed
records
genomic
variants
∼1000
germplasms,
gene
expression
profiles
∼200
samples.
Additionally,
features
thorough
annotations,
encompassing
aspects
like
genome
synteny,
ortholog
groups,
signaling
pathways,
families
protein
interactions.
To
support
basic
biology
breeding
research,
it
is
equipped
suite
user-friendly
online
tools,
including
PCR
primer
design,
CRISPR
enrichment
kinship
analysis
tools.
Foods,
Journal Year:
2020,
Volume and Issue:
9(9), P. 1304 - 1304
Published: Sept. 16, 2020
The
quest
for
a
food
secure
and
safe
world
has
led
to
continuous
effort
toward
improvements
of
global
health
systems.
While
the
developed
countries
seem
have
these
systems
stabilized,
some
parts
still
face
enormous
challenges.
Yam
(Dioscorea
species)
is
an
orphan
crop,
widely
distributed
globally;
contributed
enormously
security
especially
in
sub-Saharan
Africa
because
its
role
providing
nutritional
benefits
income.
Additionally,
yam
non-nutritional
components
called
bioactive
compounds,
which
offer
numerous
ranging
from
prevention
treatment
degenerative
diseases.
Pharmaceutical
application
diosgenin
dioscorin,
among
other
compounds
isolated
yam,
shown
more
prospects
recently.
Despite
embedded
reports
on
therapeutic
potentials
been
fragmented
diversity
within
genus
much
confusion.
An
overview
importance
will
harness
crop
meet
potential
towards
combating
hunger
malnutrition,
while
improving
health.
This
review
makes
conscious
attempt
provide
regarding
nutritional,
compositions
diversity.
Insights
how
increase
utilization
greater
impact
are
elucidated.
Nature Communications,
Journal Year:
2022,
Volume and Issue:
13(1)
Published: April 14, 2022
The
nutrient-rich
tubers
of
the
greater
yam,
Dioscorea
alata
L.,
provide
food
and
income
security
for
millions
people
around
world.
Despite
its
global
importance,
however,
yam
remains
an
orphan
crop.
Here,
we
address
this
resource
gap
by
presenting
a
highly
contiguous
chromosome-scale
genome
assembly
D.
combined
with
dense
genetic
map
derived
from
African
breeding
populations.
sequence
reveals
ancient
allotetraploidization
in
lineage,
followed
extensive
genome-wide
reorganization.
Using
genomic
tools,
find
quantitative
trait
loci
resistance
to
anthracnose,
damaging
fungal
pathogen
several
tuber
quality
traits.
Genomic
analysis
lines
both
inbreeding
as
well
regions
heterozygosity
that
may
represent
interspecific
introgression
during
domestication.
These
tools
insights
will
enable
breeders
unlock
potential
staple
crop
take
full
advantage
adaptability
varied
environments.
New Phytologist,
Journal Year:
2022,
Volume and Issue:
234(5), P. 1583 - 1597
Published: March 22, 2022
Summary
Underutilized
crops
are,
by
definition,
under‐researched
compared
to
staple
yet
come
with
traits
that
may
be
especially
important
given
climate
change
and
the
need
feed
a
globally
increasing
population.
These
are
often
stress‐tolerant,
this
combined
unique
beneficial
nutritional
profiles.
Whilst
progress
is
being
made
generating
reference
genome
sequences,
in
Tansley
Review,
we
show
how
only
very
first
step.
We
advocate
going
‘beyond
genome’
should
priority,
as
it
at
stage
one
can
identify
specific
genes
adaptive
alleles
underpin
valuable
traits.
sum
up
population
genomic
pangenomic
approaches
have
led
identification
of
stress‐
disease‐tolerant
compare
small
number
examples
from
underutilized
crops.
also
demonstrate
previously
benefitted
advances
many
breeding
targets
well
studied
This
cross‐crop
population‐level
resequencing
could
lead
an
understanding
genetic
basis
level
investment
crucial
for
fully
value
these
before
they
lost.
International Journal of Molecular Sciences,
Journal Year:
2021,
Volume and Issue:
22(15), P. 8093 - 8093
Published: July 28, 2021
Indigenous
communities
across
the
globe,
especially
in
rural
areas,
consume
locally
available
plants
known
as
Traditional
Food
Plants
(TFPs)
for
their
nutritional
and
health-related
needs.
Recent
research
shows
that
many
TFPs
are
highly
nutritious
they
contain
health
beneficial
metabolites,
vitamins,
mineral
elements
other
nutrients.
Excessive
reliance
on
mainstream
staple
crops
has
its
own
disadvantages.
food
nowadays
considered
important
of
future
can
act
supplementary
foods
burgeoning
global
population.
They
also
emergency
situations
such
COVID-19
times
pandemics.
The
current
situation
necessitates
alternative
sustainable
production.
To
increase
cultivation
or
improve
traits
TFPs,
it
is
essential
to
understand
molecular
basis
genes
regulate
some
components
resilience
biotic
abiotic
stresses.
integrated
use
modern
omics
gene
editing
technologies
provide
great
opportunities
better
genetic
superior
nutrient
content,
climate-resilient
adaptation
local
agroclimatic
zones.
Recently,
realizing
importance
benefits
scientists
have
shown
interest
prospection
sequencing
improvements,
mainstreaming.
Integrated
genomics,
transcriptomics,
proteomics,
metabolomics
ionomics
successfully
used
provided
a
comprehensive
understanding
gene-protein-metabolite
networks.
Combined
tools
led
successful
several
TFPs.
This
suggests
there
ample
scope
improvement
In
this
article,
we
highlight
importance,
progress
towards
valuable
by
techniques.
Current Opinion in Plant Biology,
Journal Year:
2022,
Volume and Issue:
69, P. 102255 - 102255
Published: July 21, 2022
Recent
advances
in
the
genomics
of
polyploid
species
answer
some
long-standing
questions
about
role
polyploidy
crop
species.
Here,
we
summarize
current
literature
to
reexamine
scenarios
which
played
a
both
before
and
after
domestication.
The
prevalence
can
help
explain
environmental
robustness
agroecosystems.
This
review
also
clarifies
molecular
basis
agriculturally
advantageous
traits
crops,
including
yield
increments
cotton
via
subfunctionalization,
modification
separated
sexuality
selfing
persimmon
neofunctionalization,
transition
system
nonfunctionalization
combined
with
epistatic
interaction
between
duplicated
S-loci.
rapid
progress
genetics
is
discussed
along
how
this
will
facilitate
functional
studies
understudied
Frontiers in Plant Science,
Journal Year:
2023,
Volume and Issue:
14
Published: Feb. 6, 2023
Landraces
represent
a
significant
gene
pool
of
African
cultivated
white
Guinea
yam
diversity.
They
could,
therefore,
serve
as
potential
donor
important
traits
such
resilience
to
stresses
well
food
quality
attributes
that
may
be
useful
in
modern
breeding.
This
study
assessed
the
pattern
genetic
variability,
quantitative
trait
loci
(QTLs),
alleles,
and
merits
landraces,
which
could
exploited
breeding
for
more
sustainable
production
Africa.A
total
86
landraces
representing
popular
Nigeria
alongside
16
elite
clones
were
used
this
study.
The
genotyped
using
4,819
DArTseq
SNP
markers
profiled
key
productivity
traits.Genetic
population
structure
through
admixture
hierarchical
clustering
methods
revealed
presence
three
major
groups.
Genome-wide
association
scan
identified
thirteen
associated
with
five
traits,
suggesting
constitute
source
valuable
genes
traits.
Further
dissection
their
Genomic
Prediction
Cross
Performance
(GPCP)
allowed
identifying
several
high
crossing
merit
multiple
Thirteen
genitors
develop
segregating
progenies
improve
simultaneously
desired
gains
Results
provide
insights
into
patterns
local
diversity
can
utilized
desirable
alleles
interest
Africa.
Frontiers in Genetics,
Journal Year:
2023,
Volume and Issue:
14
Published: June 16, 2023
Underutilized
pulses
and
their
wild
relatives
are
typically
stress
tolerant
seeds
packed
with
protein,
fibers,
minerals,
vitamins,
phytochemicals.
The
consumption
of
such
nutritionally
dense
legumes
together
cereal-based
food
may
promote
global
nutritional
security.
However,
species
deficient
in
a
few
or
several
desirable
domestication
traits
thereby
reducing
agronomic
value,
requiring
further
genetic
enhancement
for
developing
productive,
dense,
climate
resilient
cultivars.
This
review
article
considers
13
underutilized
focuses
on
germplasm
holdings,
diversity,
crop-wild-crop
gene
flow,
genome
sequencing,
syntenic
relationships,
the
potential
breeding
transgenic
manipulation,
genetics
tolerance
traits.
Recent
progress
has
shown
crop
improvement
security,
example,
basis
stem
determinacy
fragrance
moth
bean
rice
bean,
multiple
abiotic
horse
gram
tepary
bruchid
resistance
lima
low
neurotoxin
grass
pea,
photoperiod
induced
flowering
anthocyanin
accumulation
adzuki
have
been
investigated.
Advances
introgression
to
develop
elite
stocks
pea
β-ODAP
(neurotoxin
compound),
Mungbean
yellow
mosaic
India
virus
black
using
adaptation
common
genes
from
carried
out.
highlights
wider
programs
introduce
locally
adapted
de-domestication
feralization
evolution
new
variants
these
crops
also
highlighted.
Research Square (Research Square),
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 10, 2025
Abstract
Yams
(Dioscorea
spp.)
are
important
food
crops
for
millions
in
tropical
and
subtropical
regions.
Yield
loss
due
to
Yam
Mosaic
Virus
(YMV
genus
Potyvirus)
has
been
reported
have
a
high
level
of
damage,
especially
on
white
Guinea
yam
(D.
rotundata).
Crop
wild
relatives
often
serve
as
potential
sources
alleles
that
absent
many
cultivated
crop
species,
howevertheir
source
new
disease
resistance
plants
remains
underexplored.
Therefore,
this
study
evaluated
YMV
interspecific
hybrids
derived
from
two
specieses,
Dioscorea
abyssinica
female
parent
praehensilis
male
parent,
trait
introgression.
Sixty-five
hybrid
genotypes
their
parents
(maternal-TDabwild
paternal-TDPr
1018)
were
planted
the
field
exposed
natural
infestation.
Field
phenotyping
severity
ratings
(1-
asymptomatic,
2-
resistant,
3-
moderately
4-
susceptible
5-
highly
susceptible)
combined
with
molecular
analyses
using
three
diagnostic
SNP
markers,
Biotechnology
tool
ELISA,
RT-PCR
predict,
detect
quantify
susceptibility
patterns.
Significant
variability
was
observed,
exhibiting
wide
range
area
under
progress
curve
(AUDPC)
values.
Genotypes
lowest
AUDPC
values
(63)
displayed
enhanced
resistance,
while
those
higher
(197–231)
more
susceptible,
reflecting
overall
impact.
The
ELISA
findings
further
revealed
diverse
responses
among
progenies
parents.
Two
snpDR00160
snpDR00162,
favourable
resistant
GG
AA,
respectively,
allele
TT
marker
snpDR00161
failed
amplify
across
all
progenies.
Six
(TDabp2101007,
TDabp2101009,
TDabp2101015,
TDabp2101021,
TDabp2101026,
TDabp2101060)
together
-TDPr
demonstrated
putative
phenotypic,
molecular,
biotechnological
assessments,
making
them
promising
candidates
breeding
programs
aimed
at
developing
YMV-resistant
cultivars.
Word
Count:
299
FUDMA Journal of Sciences,
Journal Year:
2025,
Volume and Issue:
9(3), P. 224 - 232
Published: March 31, 2025
The
interspecific
breeding
of
yams
(Dioscorea
spp.)
for
superior
traits
is
hindered
by
the
dioecious
nature
their
flowers
and
low
flowering
frequency,
despite
potential
wild
to
improve
related
cultivated
varieties.
However,
genetic
variability
these
yam
species
has
yet
be
fully
explored.
This
study
investigated
heritability
estimates
multi-trait
selection
hybrids
derived
from
crosses
between
two
species,
Dioscorea
abyssinica
praehensilis.
Field
experiment
was
conducted
on
65
using
a
partially
replicated
block
design.
With
standard
descriptors,
data
were
collected
phenotypic
traits,
including
stem
length,
internode,
plant
vigour,
tuber
weight,
width,
thorniness,
surface
cracks.
Heritability,
advance
variance
components
estimated
quantify
contribution
trait
variability.
Analysis
identified
significant
differences
(p=0.00)
among
high
observed
in
assessed,
with
weight
showing
highest
genotypic
(104%)
(127%)
variances.
Heritability
suggested
strong
length
(74%),
(67%)
hairiness
(65%),
while
shape
(7%)
width
(9%)
showed
potential.
Multi-trait
Genotype
Ideotype
Distance
Index
(MGIDI)
analysis
further
8
high-performing
hybrid
accessions
(TDabp2101010,
TDabp2101013,
TDabp2101030,
TDabp2101042,
TDabp2101046,
TDabp2101050,
TDabp2101052,
TDabp2101055).
These
findings
demonstrate
introgression,
thereby
paving
way
development
new
cultivars
providing
valuable
insights
improvement
programs.