bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Nov. 5, 2023
Abstract
Biodiversity
is
distributed
unevenly
among
lineages
and
regions,
understanding
the
processes
generating
these
global
patterns
a
central
goal
in
evolutionary
research,
particularly
light
of
current
biodiversity
crisis.
Here,
we
integrate
phylogenetic
relatedness
with
species
diversity
four
major
clades
living
tetrapods
(amphibians,
squamates,
birds
mammals)
to
approach
this
challenge.
We
studied
geographic
richness-corrected
(residual
PD),
identifying
regions
where
are
phylogenetically
more
closely
or
distantly
related
than
expected
by
richness.
explored
effect
different
factors
residual
PD:
recent
speciation
rates,
temporal
trends
lineage
accumulation,
environmental
variables.
Specifically,
searched
for
ecological
differences
between
high
low
PD.
Our
results
reveal
nuanced
relationship
rates
PD,
underscoring
role
events
structuring
biogeographic
patterns.
Furthermore,
found
endothermic
ectothermic
response
temperature
precipitation,
highlighting
pivotal
thermal
physiology
shaping
dynamics.
By
illuminating
multifaceted
underpinning
patterns,
our
study
represents
significant
advancement
towards
effective
holistic
conservation
approaches
that
crucial
facing
ongoing
challenges.
Evolution,
Journal Year:
2008,
Volume and Issue:
62(4), P. 715 - 739
Published: April 1, 2008
Clade
dynamics
in
the
fossil
record
broadly
fit
expectations
from
operation
of
competition,
predation,
and
mutualism,
but
data
both
modern
ancient
systems
suggest
mismatches
across
scales
levels.
Indirect
effects,
as
when
antagonistic
or
mutualistic
interactions
restrict
geographic
range
thereby
elevate
extinction
risk,
are
probably
widespread
may
flow
directions,
species‐
organismic‐level
factors
increase
risk
speciation
probabilities.
Apparent
contradictions
levels
have
been
neglected,
including
(1)
individualistic
shifts
species
on
centennial
millennial
timescales
versus
evidence
for
fine‐tuned
coevolutionary
relationships;
(2)
extensive
dynamic
networks
faced
by
most
evolution
costly
enemy‐specific
defenses
finely
attuned
mutualisms;
(3)
macroevolutionary
lags
often
seen
between
origin
diversification
a
clade
an
evolutionary
novelty
rapid
microevolution
advantageous
phenotypes
invasibility
communities.
Resolution
these
other
cross‐level
tensions
presumably
hinges
how
organismic
impinge
genetic
population
structures,
ranges,
persistence
incipient
species,
generalizations
not
yet
possible.
Paleontological
neontological
incomplete
so
powerful
response
to
problems
will
require
novel
integrative
approaches.
Promising
research
areas
include
more
realistic
approaches
modeling
empirical
analysis
large‐scale
diversity
ostensibly
competing
clades;
spatial
phylogenetic
dissections
clades
involved
escalatory
(where
prey
respond
evolutionarily
broad
shifting
array
enemies);
analyses
short‐
long‐term
consequences
symbioses;
fuller
use
abundant
natural
experiments
impacts
ecosystem
engineers.
Paleobiology,
Journal Year:
2025,
Volume and Issue:
unknown, P. 1 - 12
Published: March 18, 2025
Abstract
Every
organism
interacts
with
a
host
of
other
organisms
the
same
and
different
species
throughout
its
life.
These
biotic
interactions
have
varying
influences
on
reproduction
dispersal
organism,
hence
also
population
lineage
to
which
belongs.
By
extension,
must
contribute
macroevolutionary
patterns
that
we
observe
in
fossil
record,
but
exactly
how,
when,
why
are
research
questions
been
asking
before
start
journal
Paleobiology.
In
this
contribution
for
Paleobiology
’s
50
th
anniversary,
present
brief
overview
how
paleobiologists
studied
their
consequences,
recognizing
paleontology’s
unique
position
data
insights
topic
interspecies
interactions.
We
then
explore,
semi-free-form
manner,
what
promising
avenues
might
be
open
those
us
who
use
record
understand
general,
emphasize
need
increased
effort
surrounding
understanding
ecological
details,
integration
types
information,
model-based
approaches.
Palaeontology,
Journal Year:
2025,
Volume and Issue:
68(3)
Published: May 1, 2025
Abstract
The
latitudinal
biodiversity
gradient
(LBG)
is
a
fundamental
biological
pattern
seen
across
taxa
and
ecosystems
today,
but
its
drivers
remain
uncertain
despite
intense
study.
Palaeontological
data
may
add
valuable
evidence
from
diversity
distributions
during
intervals
with
different
Earth
system
configurations,
including
potential
analogues
of
future
climate
regimes.
However,
accurately
characterizing
these
challenging
because
the
geographic
scope
fossil
record
coverage
varies
through
time,
introducing
biases
that
have
not
been
quantified
by
most
previous
studies.
Here,
we
attempt
comprehensive
documentation
marine
invertebrates
past
540
million
years,
explicitly
accounting
for
regional
variation
in
sampling.
We
demonstrate
large
uncertainties
when
using
current
at
this
scale.
Nevertheless,
some
signals
are
detectable.
show
animal
declined
increasing
palaeolatitude
decreasing
temperature
least
Permian
onwards
(298.9
Ma).
Additionally,
find
LBG
was
shallower
on
average
Earth's
hotter,
although
signal
weak.
also
document
strong,
systematic
bias
due
to
sampling
North
America
especially
Europe,
which
led
studies
incorrectly
infer
mid‐latitude
peak
warm
history.
Our
results
provide
baseline
what
databases
might
tell
us
about
Phanerozoic
LBGs
animals,
suggests
quantitative
evaluation
will
be
central
advancing
knowledge
Nature Communications,
Journal Year:
2024,
Volume and Issue:
15(1)
Published: June 27, 2024
Palaeontologists
have
long
sought
to
explain
the
diversification
of
individual
clades
whole
biotas
at
global
scales.
Advances
in
our
understanding
spatial
distribution
fossil
record
through
geological
time,
however,
has
demonstrated
that
trends
biodiversity
were
a
mosaic
regionally
heterogeneous
processes.
Drivers
must
presumably
also
displayed
regional
variation
produce
disparities
observed
past
taxonomic
richness.
Here,
we
analyse
ammonoids,
pelagic
shelled
cephalopods,
Late
Cretaceous,
characterised
by
some
palaeontologists
as
an
interval
biotic
decline
prior
their
total
extinction
Cretaceous-Paleogene
boundary.
We
subdivide
this
eliminate
impacts
sampling
biases
and
infer
origination
rates
corrected
for
temporal
using
Bayesian
methods.
then
model
these
abiotic
drivers
commonly
inferred
influence
diversification.
Ammonoid
dynamics
responses
common
set
diversity
heterogeneous,
do
not
support
ecological
decline,
demonstrate
signal
is
influenced
effort.
These
results
call
into
question
feasibility
seeking
scales
record.
Paleobiology,
Journal Year:
2024,
Volume and Issue:
unknown, P. 1 - 18
Published: March 7, 2024
Abstract
Stratigraphic
paleobiology
uses
a
modern
understanding
of
the
construction
stratigraphic
record—from
beds
to
depositional
sequences
sedimentary
basins—to
interpret
patterns
and
guide
sampling
strategies
in
fossil
record.
Over
past
25
years,
its
principles
have
been
established
primarily
through
forward
numerical
modeling,
originally
shallow-marine
systems
more
recently
nonmarine
systems.
Predictions
these
models
tested
outcrop-scale
basin-scale
field
studies,
which
also
revealed
new
insights.
At
multi-basin
global
scales,
joint
development
biotic
records
has
come
largely
from
macrostratigraphy,
analysis
gap-bound
packages
rock.
Here,
we
present
recent
advances
six
major
areas
paleobiology,
including
critical
tests
Po
Plain
Italy,
mass
extinctions
recoveries,
contrasts
systems,
interrelationships
habitats
architecture,
large-scale
assembly
regional
ecosystems.
We
highlight
potential
for
future
research
that
applies
paleobiological
concepts
studies
climate
change,
geochemistry,
phylogenetics,
structure
conclude
with
need
thinking
paleobiology.
Frontiers of Biogeography,
Journal Year:
2024,
Volume and Issue:
17
Published: Aug. 5, 2024
It
is
now
widely
recognized
that
broad-scale
patterns
in
species
richness,
particularly
the
Latitudinal
Diversity
Gradients
(LDGs),
are
driven
by
complex
interactions
among
ecological,
evolutionary,
and
historical
processes.
However,
even
if
it
possible
to
better
evaluate
evolutionary
explanations
for
LDGs
based
on
speciation
diversification
rates
estimated
from
phylogenies,
a
subtle
interaction
between
such
estimates
geographic
structure
of
Linnean
shortfall,
forming
Taxonomy
Gradient
(LTG),
was
recently
recognized.
Here,
we
expand
previous
simulation
results
show
relatively
small
geographical
bias
adding
less
than
20%
new
phylogenetically
correlated
with
previously
described
ones
southern
(richer)
region,
would
be
enough
change
rates,
different
methods
(tip
DR
GeoSSE).
Further
investigations
magnitude
LTG
empirical
modeling
problems
delimitation
thus
necessary
robustness
gradients
biased
knowledge
taxonomic
uncertainty,
allowing
understanding
dynamics
underlying
LDGs.
Geographical
creating
(LTGs),
may
jeopardize
robust
our
processes
diversity
patterns.
Simulations
undiscovered
close
known
ones,
sufficient
invert
two
distinct
methods.
A
more
comprehensive
assessment
respect
LTGs
Empirical
quality
simulations
branches
mitigating
simultaneously
both
Darwinian
shortfalls,
provide
consistent
evidence
drivers
accounting
uncertainty.
Biology Letters,
Journal Year:
2024,
Volume and Issue:
20(11)
Published: Nov. 1, 2024
Dinosaurs
thrived
for
over
160
million
years
in
Mesozoic
ecosystems,
displaying
diverse
ecological
and
evolutionary
adaptations.
Their
ecology
was
shaped
by
large-scale
climatic
biogeographic
changes,
calling
a
‘deep-time’
macroecological
investigation.
These
factors
include
temperature
fluctuations
the
break
up
of
Pangaea,
influencing
species
richness,
diversity
history.
Recent
improvements
dinosaur
fossil
record
have
enabled
studies
their
responses
to
tectonic,
geographic
shifts.
Trends
diversity,
body
size
reproductive
traits
can
now
be
analysed
using
quantitative
approaches
like
phylogenetic
comparative
methods,
machine
learning
Bayesian
inference.
patterns
sometimes
align
with,
but
also
deviate
from,
first-order
rules
(e.g.
species–area
relationship,
latitudinal
biodiversity
gradient,
Bergmann’s
rule).
Accurate
reconstructions
palaeobiodiversity
niche
partitioning
require
ongoing
taxonomic
revisions
detailed
anatomical
descriptions.
Interdisciplinary
research
combining
sedimentology,
geochemistry
palaeoclimatology
helps
uncover
environmental
conditions
driving
Fieldwork
under-sampled
regions,
particularly
at
extremes,
is
crucial
understanding
spatial
heterogeneity
ecosystems
across
planet.
Open
science
initiatives
online
databases
play
key
role
advancing
this
field,
enriching
our
deep-time
processes,
offering
new
insights
into
macroecology
its
broader
implications.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: April 1, 2024
Abstract
Cleistogamy
is
a
mating
system
in
which
plants
produce
some
proportion
of
closed,
autonomously
self-pollinating
flowers.
Cleistogamous
flowers
differ
from
chasmogamous
flowers,
are
open
capable
outcrossing.
Both
dimorphic
cleistogamy
(cleistogamous
and
produced
on
the
same
plant)
complete
occur.
has
been
hypothesized
to
be
bet
hedging
strategy
for
reducing
risk
face
unpredictable
pollinator
availability.
However,
conflicting
results
across
species
challenges
connecting
theory
data
have
prevented
researchers
proving
that
hedging.
To
test
hypothesis,
we
investigated
distribution
over
400
cleistogamous
through
biogeographical
analyses.
We
find
more
prevalent
cooler,
variable
environments.
Additionally,
among
species,
likely
occur
warmer,
stable,
tropical
subtropical
hypothesize
difference
between
may
driven
by
opposing
forces
selection
increase
extinction
risk,
using
heuristic
Markov
transition
model.
conclude
suggests
evolved
environments,
consistent
with
expectations
Global Ecology and Biogeography,
Journal Year:
2024,
Volume and Issue:
33(7)
Published: May 18, 2024
Abstract
Aim
Global
patterns
in
species
distributions
such
as
the
latitudinal
biodiversity
gradient
are
of
great
interest
to
ecologists
and
have
been
thoroughly
studied.
Whether
a
holds
true
for
proportion
associated
with
key
ecotypes
forests
is
however
unknown.
Identifying
ascertaining
factors
causing
it
could
further
our
understanding
community
sensitivity
deforestation
uncover
drivers
habitat
specialization.
The
null
hypothesis
that
proportions
forest
remain
globally
consistent,
though
we
hypothesize
will
change
differences
ecotype
amount,
spatial
structure,
environmental
stability.
Here
study
whether
follows
gradient,
test
hypotheses
why
this
may
occur.
Location
Worldwide.
Time
period
Present.
Major
taxa
studied
Terrestrial
vertebrates.
Methods
We
combined
range
maps
use
data
all
terrestrial
vertebrates
calculate
an
area.
then
used
on
global
distribution
current,
recent
historical,
long‐term
historical
cover,
well
disturbances
plant
diversity
using
generalized
linear
models.
Results
identified
whereby
highest
occurred
at
equator
decreased
polewards.
additionally
found
increased
current
deforestation,
structural
complexity,
Despite
inclusion
these
variables,
strong
remained,
suggesting
additional
causes
gradient.
Main
conclusions
Our
findings
suggest
result
ecological,
evolutionary
factors.
Interestingly,
high
were
areas
experienced
lagged
response
perturbations
potential
extinction
debt.