Haplotype-resolved assemblies provide insights into genomic makeup of the oldest grapevine cultivar (Munage) in Xingjiang DOI Creative Commons

Haixia Zhong,

Xiaoya Shi,

Fuchun Zhang

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 14, 2024

Abstracts Munage, an ancient grape variety that has been cultivated for thousands of years in Xinjiang, China, is recognized its exceptional fruit traits. There are two main types Munage: white (WM) and red (RM). However, the lack a high-quality genomic resources impeded effective breeding restricted potential expanding these varieties to other growing regions. In this study, we assembled haplotype-resolved genome assemblies WM RM, alongside integrated whole resequencing (WGS) data transcriptome illuminate specific mutations associated genes Munake with color Selective analysis between Munage clones Eurasian grapes suggested adaptive selection exists grapes, enriched processes including cell maturation, plant epidermal differentiation, root differentiation. The study examined within found PMAT2 on chromosome 12 MYB123 13 likely responsible variation RM. These findings provide crucial genetic investigating genetics Chinese variety, will facilitate improvement grapevine.

Language: Английский

Impacts of reproductive systems on grapevine genome and breeding DOI Creative Commons
Hua Xiao, Yue Wang, Wénwén Liú

et al.

Nature Communications, Journal Year: 2025, Volume and Issue: 16(1)

Published: March 3, 2025

Diversified reproductive systems can be observed in the plant kingdom and applied crop breeding; however, their impacts on genomic variation breeding remain unclear. Grapevine (Vitis vinifera L.), a widely planted fruit tree, underwent shift from dioecism to monoecism during domestication involves crossing, self-pollination, clonal propagation for its cultivation. In this study, we discover that types, namely, selfing, cloning, dramatically impact landscapes grapevine based comparative population genetics of wild complex pedigree Pinot Noir. The are divergent, which show interesting patterns purging Hill-Robertson interference. Selfing reduces heterozygosity, while cloning increases it, resulting "double U-shaped" site frequency spectrum (SFS). Crossing conceal selfing purges most deleterious structural burdens. Moreover, close leakage large-effect variations repulsion phases maintains heterozygous regions 4.3% genome after successive nine generations. Our study provides new insights into genetic basis crops by variants integrating beneficial through various systems. Effects Here, authors report types analyses

Language: Английский

Citations

1
Population genomics of Vitis pseudoreticulata reveals the genetic basis of fungal resistance in grapevine DOI Creative Commons
Zhen Zhang, Wénwén Liú, Tianhao Zhang

et al.

Horticultural Plant Journal, Journal Year: 2025, Volume and Issue: unknown

Published: March 1, 2025

Language: Английский

Citations

0
Responses of grapevine cells to physiological doses of ethanol, among which induced resistance to heat stress DOI Creative Commons

Alice Diot,

Guillaume Madignier, Olivia Di Valentin

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 2, 2024

Abstract Grapevine naturally endures stresses like heat, drought, and hypoxia. A recent study showed very low oxygen levels inside grape berries, linked to ethanol content. Other studies have established the link between tolerance various stresses: heat stress, high salinity. The causes of such a are not well understood. In our study, three-week-old Gamay calli, Vitis vinifera , were characterised for their endogenous concentration. Subsequently, transcriptomic these cells was conducted, 6 24 hours after treatment with 1 mM ethanol. After hours, addition led 386 differentially expressed genes, notable upregulation genes related response, especially small Heat Shock Proteins (sHSPs). Further experiments that priming in or Arabidopsis seedlings reduced pigment electrolyte leakage under respectively. This supports idea helps protect plants against stress provides valuable RNA-seq dataset further research into underlying mechanisms, sHSPs playing potentially crucial role this adaptive response.

Language: Английский

Citations

2
Haplotype-resolved assemblies provide insights into genomic makeup of the oldest grapevine cultivar (Munage) in Xingjiang DOI Creative Commons

Haixia Zhong,

Xiaoya Shi,

Fuchun Zhang

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 14, 2024

Abstracts Munage, an ancient grape variety that has been cultivated for thousands of years in Xinjiang, China, is recognized its exceptional fruit traits. There are two main types Munage: white (WM) and red (RM). However, the lack a high-quality genomic resources impeded effective breeding restricted potential expanding these varieties to other growing regions. In this study, we assembled haplotype-resolved genome assemblies WM RM, alongside integrated whole resequencing (WGS) data transcriptome illuminate specific mutations associated genes Munake with color Selective analysis between Munage clones Eurasian grapes suggested adaptive selection exists grapes, enriched processes including cell maturation, plant epidermal differentiation, root differentiation. The study examined within found PMAT2 on chromosome 12 MYB123 13 likely responsible variation RM. These findings provide crucial genetic investigating genetics Chinese variety, will facilitate improvement grapevine.

Language: Английский

Citations

1