The American Naturalist,
Journal Year:
2024,
Volume and Issue:
unknown, P. 000 - 000
Published: Oct. 11, 2024
AbstractRecent
developments
in
competition
theory-namely,
modern
coexistence
theory
(MCT)-have
aided
empiricists
formulating
tests
of
species
persistence,
coexistence,
and
evolution
from
simple
to
complex
community
settings.
However,
the
parameters
used
predict
competitive
outcomes,
such
as
interaction
coefficients,
invasion
growth
rates,
stabilizing
differences,
remain
biologically
opaque,
making
findings
difficult
generalize
across
ecological
This
article
is
structured
around
five
goals
toward
clarifying
MCT
by
first
a
case
for
modern-day
utility
MacArthur's
consumer-resource
model,
model
with
surprising
complexity
depth:
(i)
describe
uniquely
accessible
language,
deciphering
mathematics
cultivating
deeper
biological
intuition
about
competition's
inner
workings
regardless
what
empirical
toolkit
one
uses;
(ii)
provide
translation
between
mechanisms
MCT;
(iii)
make
explicit
important
but
understated
assumptions
plain
terms;
(iv)
recommendations;
(v)
examine
how
key
concepts
(e.g.,
r/K-selection)
can
be
understood
renewed
clarity
through
lens.
We
end
highlighting
opportunities
explore
tandem
compare
translate
results
currencies
more
unified
science.
Journal of Ecology,
Journal Year:
2023,
Volume and Issue:
111(8), P. 1641 - 1655
Published: June 5, 2023
Abstract
Biodiversity
emerges
from
niche
mechanisms,
in
which
the
combination
of
traits
determines
species
performance,
and
populations
drift
because
inherent
stochasticity
community
assembly
processes.
Population
biology
dictates
that
small
isolated
communities
are
more
prone
to
show
stochastic
assemblages.
However,
a
reduced
mass
effect
may
promote
trait
selection.
In
addition,
large
connected
have
larger
pool,
higher
functional
redundancy,
lower
population
sizes
random
recruitment,
also
fosters
assembly.
These
contradictory
expectations
demand
empirical
analyses.
Plant
metacommunities
temporary
ponds
assembled
by
action
strong
environmental
filters
cover
wide
ranges
local
connectivity,
representing
ideal
systems
for
identifying
determinants
trait‐selection
Using
deviance
partition
method
introduced
theory
selection,
we
evaluated
role
plant
assemblies
along
60
14‐year
survey
ponds.
Variation
pond
size,
hydroperiod,
connectitivity
heterogeneity
determined
selection
gradien
related
drought
resistance,
life
history
disperal
strategies;
strength
trait‐mediated
The
taxonomic
diversity
its
physical
fostered
community,
presented
hump‐shaped
association
with
connectivity.
area
increased
richness
but
decreased
diversity,
determining
negative
positive
indirect
effects
on
stochasticity.
Synthesis
.
Diversity
provides
raw
material
putatively
reducing
stochasticity,
here
was
positively
Having
enough
redundancy
diverse
is
probably
fostering
between
connectivity
supports
due
weak
effect,
set
optimal
scenario
could
be
available.
ongoing
state
ecosystem
fragmentation,
these
trends
contribute
mechanistic
understanding
connection
landscape
structure
biodiversity
BMC Biology,
Journal Year:
2025,
Volume and Issue:
23(1)
Published: Feb. 4, 2025
Abstract
While
psychologists
have
extensively
discussed
the
notion
of
a
“theory
crisis”
arising
from
vague
and
incorrect
hypotheses,
there
has
been
no
debate
about
such
crisis
in
biology.
However,
biologists
long
communication
failures
between
theoreticians
empiricists.
We
argue
failure
is
one
aspect
theory
because
misapplied
misunderstood
theories
lead
to
poor
hypotheses
research
waste.
review
its
solutions
compare
them
with
methodology-focused
proposed
for
replication
crises.
conclude
by
discussing
how
promoting
inclusion,
diversity,
equity,
accessibility
(IDEA)
theoretical
biology
could
contribute
ameliorating
breakdowns
theory-empirical
cycle.
Ecology Letters,
Journal Year:
2025,
Volume and Issue:
28(2)
Published: Feb. 1, 2025
ABSTRACT
Human
activities
have
caused
significant
changes
in
animal
abundance,
interactions,
movement
and
diversity
at
multiple
scales.
Growing
empirical
evidence
reveals
the
myriad
ways
that
these
can
alter
control
animals
exert
over
biogeochemical
cycling.
Yet
a
theoretical
framework
to
coherently
integrate
predict
when
how
controls
cycling
(i.e.,
zoogeochemistry)
change
is
currently
lacking.
We
present
such
general
provides
guidance
on
linking
mathematical
models
of
species
interaction
(network
theory)
organisms
non‐living
materials
(meta‐ecosystem
account
for
biotic
abiotic
feedback
by
which
illustrate
apply
develop
predictive
specific
ecosystem
contexts
using
case
study
primary
producer–herbivore
bipartite
trait
network
boreal
forest
ecosystem.
further
discuss
key
priorities
enhancing
model
development,
data–model
integration
application.
The
offers
an
important
step
enhance
research
better
inform
justify
broader
conservation
efforts
aimed
conserving
restoring
populations,
their
critical
functional
roles
support
services
nature‐based
climate
solutions.
Global Change Biology,
Journal Year:
2025,
Volume and Issue:
31(4)
Published: April 1, 2025
ABSTRACT
The
IPCC
predicts
that
events
at
the
extreme
tail
of
probability
distribution
will
increase
a
higher
rate
relative
to
less
severe
but
still
abnormal
events.
Such
outlier
are
particular
concern
due
nonlinear
physiological
and
demographic
responses
climatic
exposure,
meaning
these
expected
have
disproportionate
impacts
on
populations
over
next
decades
(so
called
low‐likelihood,
high‐impact
—LLHI).
Because
such
historically
rare,
forecasting
how
biodiversity
respond
requires
mechanistic
models
integrate
fundamental
processes
driving
biological
our
changing
climate.
Here
we
built
matrix
population
model
(MPM)
from
long‐term
monitored
an
insect
species
in
Mediterranean
area.
simultaneously
integrates
effects
microclimatic
heat
exposure
drought‐induced
host‐plant
scarcity
early
life
stages,
key
methodological
step
forward
because
understudied
stages
usually
very
susceptible
This
for
first
time
allowed
us
forecast
LLHI
well‐known
considering
their
whole
cycle.
We
found
juveniles
were
stage
with
largest
contribution
dynamics.
In
line
field
observations,
simulated
rates
current
regimes
importantly
determined
by
drought
impacts,
producing
regional
mosaic
non‐declining
declining
populations.
simulations
also
indicated
future,
climate
scenarios
not
meeting
Paris
Agreement,
extremes
triggered
regionally
widespread
declines
this
currently
abundant
species.
Our
results
suggest
could
thus
emerge
as
critical
new
—but
overlooked—
driver
populations,
risking
crucial
ecosystem
functions
they
perform.
process‐based
whole‐cycle
modelling
approaches
tool
which
understand
true
change.
Recent
developments
in
competition
theory,
namely,
Modern
Coexistence
Theory
(MCT),
have
aided
empiricists
formulating
tests
of
species
persistence,
coexistence,
and
evolution
from
simple
to
complex
community
settings.
However,
the
parameters
used
predict
competitive
outcomes,
such
as
interaction
coefficients,
invasion
growth
rates,
or
stabilizing
differences,
remain
biologically
opaque,
making
findings
difficult
generalize
across
ecological
Here,
our
article
is
structured
around
five
goals,
towards
clarifying
MCT
by
first
a
case
for
modern-day
utility
MacArthur’s
consumer-resource
model,
model
with
surprising
complexity
depth:
(i)
describe
uniquely
accessible
language,
deciphering
mathematics
cultivating
deeper
biological
intuition
about
competition’s
innerworkings
regardless
what
empirical
toolkit
one
uses,
(ii)
provide
translation
between
mechanisms
coexistence
MCT,
(iii)
make
explicit
important
but
understated
assumptions
plain
terms,
(iv)
recommendations,
(v)
examine
how
key
concepts
(e.g.,
r/K
selection)
can
be
understood
renewed
clarity
through
lens.
We
end
highlighting
opportunities
explore
tandem
compare
translate
results
currencies
more
unified
science.
Ecology,
Journal Year:
2024,
Volume and Issue:
105(9)
Published: Aug. 6, 2024
Demographic
processes
that
ensure
the
recovery
and
resilience
of
marine
populations
are
critical
as
climate
change
sends
an
increasing
proportion
on
a
trajectory
decline.
Yet
for
some
populations,
potential
remains
high.
We
conducted
annual
monitoring
over
9
years
(2012-2020)
to
assess
coral
belonging
genus
Pocillopora.
These
experienced
catastrophic
collapse
following
severe
typhoon
in
2009.
From
start
period,
high
initial
recruitment
led
establishment
juvenile
population
rapidly
transitioned
sexually
mature
adults,
which
dominated
within
6
after
disturbance.
As
result,
cover
increased
from
1.1%
20.2%
during
this
time.
To
identify
key
demographic
drivers
growth
rates
(λ),
we
applied
kernel-resampled
integral
projection
models
(IPMs),
constructing
eight
successive
examine
change.
IPMs
were
able
capture
reproductive
traits
3
years,
while
individual
was
continuous
driver
throughout
entire
period.
further
detected
pulse
output
subsequent
two
Category
5
events
exemplifying
mechanisms
impacted
by
Despite
rapid
recovery,
(i.e.,
cover,
colony
growth,
low
mortality),
estimated
predominantly
negative
values
λ,
indicating
declining
population.
Indeed,
λ
translates
number
individuals,
can
also
be
driven
increase
size
surviving
colonies.
Our
results
illustrate
accumulating
long-term
data
historical
dynamics
applying
extract
crucial
future
predictions
based
comprehensive
robust
understandings
ecological
BioScience,
Journal Year:
2021,
Volume and Issue:
72(3), P. 300 - 313
Published: Dec. 11, 2021
Abstract
Theories
underpin
science.
In
biology,
theories
are
often
formalized
in
the
form
of
mathematical
models,
which
may
render
them
inaccessible
to
those
lacking
training.
present
article,
we
consider
how
could
be
presented
better
aid
understanding.
We
provide
concrete
recommendations
inspired
by
cognitive
load
theory,
a
branch
psychology
that
addresses
impediments
knowledge
acquisition.
classify
these
into
two
classes:
increase
links
between
new
and
existing
information
reduce
unnecessary
or
irrelevant
complexities.
For
each,
examples
illustrate
scenarios
they
apply.
By
enhancing
reader's
familiarity
with
material,
lower
mental
capacity
required
learn
information.
Our
hope
is
can
pathway
for
theoreticians
accessibility
their
work
empiricists
engage
strengthening
feedback
theory
experimentation.
Ecology and Evolution,
Journal Year:
2022,
Volume and Issue:
12(12)
Published: Dec. 1, 2022
Abstract
The
integration
of
theory
and
data
drives
progress
in
science,
but
a
persistent
barrier
to
such
ecology
evolutionary
biology
is
that
often
developed
expressed
the
form
mathematical
models
can
feel
daunting
inaccessible
for
students
empiricists
with
variable
quantitative
training
attitudes
towards
math.
A
promising
way
make
more
approachable
embed
them
into
interactive
tools
which
one
visually
evaluate
model
structures
directly
explore
outcomes
through
simulation.
To
promote
learning
models,
we
EcoEvoApps,
collection
free,
open‐source,
multilingual
R/Shiny
apps
include
overviews,
simulations,
code
implement
these
R.
package
currently
focuses
on
canonical
population
dynamics,
species
interactions,
landscape
ecology.
These
help
illustrate
fundamental
results
from
theoretical
serve
as
valuable
teaching
classroom
settings.
We
present
student
surveys
show
rate
useful
tools,
using
leads
substantial
gains
students'
interest
confidence
working
models.
This
points
potential
activities
accessible
wider
audience,
thus
facilitate
feedback
between
across
biology.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: July 4, 2023
Abstract
Modern
Coexistence
Theory
(MCT)
offers
a
conceptually
straightforward
approach
for
connecting
empirical
observations
with
an
elegant
theoretical
framework,
gaining
popularity
rapidly
over
the
past
decade.
However,
beneath
this
surface-level
simplicity
lie
various
assumptions
and
subjective
choices
made
during
data
analysis.
These
can
lead
researchers
to
draw
qualitatively
different
conclusions
from
same
set
of
experiments.
As
predictions
MCT
studies
are
often
treated
as
outcomes,
many
readers
reviewers
may
not
be
familiar
framework’s
assumptions,
there
is
particular
risk
“researcher
degrees
freedom”
inflating
confidence
in
results,
thereby
affecting
reproducibility
predictive
power.
To
tackle
these
concerns,
we
introduce
checklist
consisting
statistical
best-practices
promote
more
robust
applications
MCT.
Our
recommendations
organised
into
four
categories:
presentation
sharing
raw
data,
testing
model
fits,
managing
uncertainty
associated
coefficients,
incorporating
coexistence
predictions.
We
surveyed
published
15
years
discovered
high
degree
variation
level
rigour
adherence
best
practices.
present
case
illustrate
dependence
results
on
seemingly
innocuous
among
competition
structure
error
distributions,
which
some
cases
reversed
predicted
outcomes.
demonstrate
how
analytical
approaches
profoundly
alter
interpretation
experimental
underscoring
importance
carefully
considering
thoroughly
justifying
each
step
taken
analysis
pathway.
serves
resource
authors
alike,
providing
guidance
strengthen
foundation
analyses.
field
shifts
descriptive,
trailblazing
phase
stage
consolidation,
emphasise
need
caution
when
building
upon
findings
earlier
studies.
ensure
that
progress
ecological
based
reliable
evidence,
it
crucial
subject
our
predictions,
conclusions,
generalizability
rigorous
assessment
than
currently
trend.