Genome Biology and Evolution,
Journal Year:
2020,
Volume and Issue:
13(1)
Published: Nov. 18, 2020
Abstract
Brown
rats
(Rattus
norvegicus)
thrive
in
urban
environments
by
navigating
the
anthropocentric
environment
and
taking
advantage
of
human
resources
by-products.
From
perspective,
are
a
chronic
problem
that
causes
billions
dollars
damage
to
agriculture,
health,
infrastructure.
Did
genetic
adaptation
play
role
spread
cities?
To
approach
this
question,
we
collected
whole-genome
sequences
from
29
brown
New
York
City
(NYC)
scanned
for
signatures
adaptation.
We
tested
1)
high-frequency,
extended
haplotypes
could
indicate
selective
sweeps
2)
loci
extreme
differentiation
between
NYC
sample
presumed
ancestral
range
northeast
China.
found
candidate
near
or
inside
genes
associated
with
metabolism,
diet,
nervous
system,
locomotory
behavior.
Patterns
Chinese
at
putative
sweep
suggest
many
began
after
split
population.
Together,
our
results
several
hypotheses
on
living
proximity
humans.
Ecology and Evolution,
Journal Year:
2019,
Volume and Issue:
9(3), P. 1173 - 1181
Published: Jan. 4, 2019
Landscape
structure
can
affect
dispersal
and
gene
flow
in
a
species.
In
urban
areas,
buildings,
roads,
small
habitat
patches
make
the
landscape
highly
fragmented
inhibit
movement
behavior.
Similarly,
rural
forested
large
open
such
as
fields,
may
act
barriers
to
movement.
We
studied
how
affects
natal
distances
of
Eurasian
red
squirrels
(Sciurus
vulgaris)
an
area
Finland,
by
monitoring
juvenile
with
radio
telemetry.
observed
extremely
long
distances-up
16
km-in
study
area,
but
shorter
distances-on
average
only
half
kilometer-in
area.
The
affected
eventual
paths;
landscape,
dispersers
favored
spruce
dominated
areas
avoided
fields
along
their
route,
although
they
occasionally
even
crossed
wide
fields.
preferred
deciduous
or
coniferous
trees.
steps
made
were
longer
more
hostile
compared
areas.
Despite
these
effects
on
path,
had
minor
effect
straight
line
moved
from
nest.
other
words,
individuals
likely
circumvent
this
did
not
far
settled
home.
This
result
indicates
that,
has
obvious
movement,
it
still
have
aspects
population,
for
example,
flow.
Animal Microbiome,
Journal Year:
2021,
Volume and Issue:
3(1)
Published: July 5, 2021
Abstract
Background
Host-associated
microbiota
are
integral
to
the
ecology
of
their
host
and
may
help
wildlife
species
cope
with
rapid
environmental
change.
Urbanization
is
a
globally
replicated
form
severe
change
which
we
can
leverage
better
understand
microbiomes.
Does
colonization
separate
cities
result
in
parallel
changes
intestinal
microbiome
wildlife,
if
so,
does
within-city
habitat
heterogeneity
matter?
Using
16S
rRNA
gene
amplicon
sequencing,
quantified
effect
urbanization
(across
three
cities)
on
eastern
grey
squirrels
(
Sciurus
carolinensis
).
Grey
ubiquitous
rural
urban
environments
throughout
native
range,
across
they
display
an
apparent
coat
colour
polymorphism
(agouti,
black,
intermediate).
Results
squirrel
microbiomes
differed
between
city
environments;
however,
comparable
variation
was
explained
by
within
cities.
Our
analyses
suggest
that
operational
taxonomic
unit
(OTU)
community
structure
more
strongly
influenced
local
conditions
(rural
forests
versus
human
built
habitats)
than
broader
landscape
(city
rural).
The
bacterial
genera
characterizing
built-environment
thought
specialize
host-derived
products
have
been
linked
previous
research
low
fibre
diets.
However,
despite
at
fine
spatial
scales,
phylogenetic
patterns
were
phenotype
dependent.
City
agouti
displayed
greater
beta-dispersion
those
or
forest
environments,
null
modelling
results
indicated
did
not
differ
greatly
from
stochastic
expectations.
Conclusions
Squirrel
but
differences
magnitude
observed
land
classes
scale.
We
observe
strong
evidence
inter-environmental
disparate
selective
pressures.
Rather,
our
dispersal
ecological
drift
shaping
observed.
these
processes
partly
mediated
phenotype.
Given
well-known
cline
melanism,
provide
useful
free-living
system
study
how
genetics
mediate
environment
x
interactions.
Animals,
Journal Year:
2022,
Volume and Issue:
12(23), P. 3246 - 3246
Published: Nov. 23, 2022
The
red
squirrel
is
among
the
mammals
that
have
adjusted
well
to
urban
habitats.
Here,
we
focused
on
two
populations
inhabiting
Warsaw:
in
a
park
(with
year-round
supplemental
feeding)
and
an
forest.
We
hypothesised
squirrels
would
higher
body
mass
(and
better
condition),
being
more
stable
over
year,
breeding
rate
(i.e.,
share
of
females).
Contrary
our
hypothesis,
forest
were
heavier
had
condition
than
squirrels.
masses
from
both
areas
quite
highest
values
obtained
spring).
Females
conditions
likely
breed.
More
females
sub-adults
trapped
park.
Regardless
study
site,
was
spring,
but
they
also
bred
winter
remaining
seasons.
lower
mass/condition
may
be
possibly
explained
by
high
intraspecific
competition,
or
food
thermal
as
typical
for
city)
conditions,
which
accumulating
fat
not
crucial.
Mild
enabled
breed
early.
This
showed
plasticity
living
human-transformed
Genome Biology and Evolution,
Journal Year:
2020,
Volume and Issue:
13(1)
Published: Nov. 18, 2020
Abstract
Brown
rats
(Rattus
norvegicus)
thrive
in
urban
environments
by
navigating
the
anthropocentric
environment
and
taking
advantage
of
human
resources
by-products.
From
perspective,
are
a
chronic
problem
that
causes
billions
dollars
damage
to
agriculture,
health,
infrastructure.
Did
genetic
adaptation
play
role
spread
cities?
To
approach
this
question,
we
collected
whole-genome
sequences
from
29
brown
New
York
City
(NYC)
scanned
for
signatures
adaptation.
We
tested
1)
high-frequency,
extended
haplotypes
could
indicate
selective
sweeps
2)
loci
extreme
differentiation
between
NYC
sample
presumed
ancestral
range
northeast
China.
found
candidate
near
or
inside
genes
associated
with
metabolism,
diet,
nervous
system,
locomotory
behavior.
Patterns
Chinese
at
putative
sweep
suggest
many
began
after
split
population.
Together,
our
results
several
hypotheses
on
living
proximity
humans.