SSRN Electronic Journal,
Journal Year:
2022,
Volume and Issue:
unknown
Published: Jan. 1, 2022
Estuaries
are
critical
habitats
subject
to
a
range
of
stressors
requiring
effective
management.
Microbes
gaining
recognition
as
environmental
indicators,
however,
the
response
host
associated
communities
remains
poorly
understood.
We
examined
microbial
from
seawater,
sediments
and
estuarine
fish
Pelates
sexlineatus,
in
Australia’s
largest
urbanised
estuary,
hypothesised
that
anthropogenic
contamination
would
be
reflected
microbiology
these
sample
types.
The
human
faecal
markers
Lachno3
HF183
were
not
detected,
indicating
negligible
influence
sewage,
but
gradient
copy
numbers
class
1
integron
(intI-1),
which
is
often
used
marker
for
contamination,
was
observed
positively
correlated
with
metal
concentrations.
While
seawater
strongly
driven
by
shifts
diversity
composition
gut
microbiome
observed,
statistical
links
levels
(F2
=
1.5367,
p
0.003).
Within
microbiome,
we
further
report
increased
relative
abundance
ASVs
identified
resistant
potentially
pathogenic
genera,
well
those
may
have
roles
inflammation.
These
results
demonstrate
distinct
within
systems
unique
stressors,
alterations
related
legacy
consequences
health.
Frontiers in Marine Science,
Journal Year:
2022,
Volume and Issue:
9
Published: April 29, 2022
Kelp
forests
are
experiencing
broad
scale
declines
in
abundance
and
shifts
latitudinal
ranges
many
areas
of
the
world
due
to
numerous
environmental
stressors,
especially
those
associated
with
climate
change.
While
majority
studies
on
kelp
ecology
have
focused
exclusively
macroscopic
sporophyte
life
stage,
a
growing
number
is
showing
quite
convincingly
that
microscopic
zoospore
gametophyte
stages
can
be
important
establishing
spatial
patterns
these
marine
forests,
facilitating
their
recovery
following
deforestation.
Unfortunately,
sizes
made
them
difficult
study
field,
leading
‘black
box’
surrounding
what
we
know
about
ecologies.
However,
advances
experimental
methodologies
laboratories
studying
revealing
how
they
affected
by
variability
conditions,
providing
clearer
picture
might
respond
changing
ocean
climate.
These
largely
revealed
kelps
disperse
over
wide
range
distances,
enhanced
synchronous
release
vertical
transport
zoospores
into
shallower
water,
floating
rafts
reproductive
thalli.
Settlement
benthos
facilitated
both
positive
negative
chemotaxis,
active
selection
microhabitats
favor
growth
survival.
Following
settlement
subsequent
germination,
haploid
gametophytes
delay
development
form
bank
forms
persist
during
periods
unfavorable
for
large
populations,
or
develop
undergo
sexual
reproduction
which
conditions.
In
particular,
strongly
increases
irradiance
(PAR,
UVA
+
UVB)
temperature,
decreases
nutrients
salinity,
sedimentation
grazing.
manner
stressors
varies
among
species
geographic
distributions,
integral
biogeographic
populations.
Given
factors
expected
change
as
changes,
species-specific
responses
significant
implications
future
distribution
iconic
forests.
Environmental Pollution,
Journal Year:
2022,
Volume and Issue:
314, P. 120222 - 120222
Published: Sept. 20, 2022
Estuaries
are
critical
habitats
subject
to
a
range
of
stressors
requiring
effective
management.
Microbes
gaining
recognition
as
environmental
indicators,
however,
the
response
host
associated
communities
remains
poorly
understood.
We
examined
microbial
from
seawater,
sediments
and
estuarine
fish
Pelates
sexlineatus,
in
Australia's
largest
urbanised
estuary,
hypothesised
that
anthropogenic
contamination
would
be
reflected
microbiology
these
sample
types.
The
human
faecal
markers
Lachno3
HF183
were
not
detected,
indicating
negligible
influence
sewage,
but
gradient
copy
numbers
class
1
integron
(intI-1),
which
is
often
used
marker
for
contamination,
was
observed
positively
correlated
with
metal
concentrations.
While
seawater
strongly
driven
by
shifts
diversity
composition
gut
microbiome
observed,
statistical
links
levels
(F2,
21
=
1.536,
p
<
0.01).
Within
microbiome,
we
further
report
increased
relative
abundance
amplicon
sequence
variants
(ASVs;
single
inferred
DNA
sequences
obtained
sequencing)
identified
resistant
potentially
pathogenic
genera,
well
those
may
have
roles
inflammation.
These
results
demonstrate
distinct
within
systems
unique
stressors,
alterations
implications
adaptation
legacy
contamination.
Molecular Ecology,
Journal Year:
2023,
Volume and Issue:
32(16), P. 4584 - 4598
Published: June 18, 2023
Abstract
A
fundamental
question
in
holobiont
biology
is
the
extent
to
which
microbiomes
are
determined
by
host
characteristics
regulated
their
genotype.
Studies
on
interactions
of
genotype
and
emerging
but
disentangling
role
that
has
shaping
remains
challenging
natural
settings.
Host
genotypes
tend
be
segregated
space
affected
different
environments.
Here
we
overcome
this
challenge
studying
an
unusual
situation
where
asexual
(5
clonal
lineages)
sexual
(15
non‐clonal
same
species
co‐occur
under
environment.
This
allowed
us
partition
influence
morphological
traits
host‐associated
bacterial
communities.
Lamina‐associated
bacteria
co‐occurring
kelp
(
Ecklonia
radiata
)
E.
brevipes
morphs
were
compared
test
whether
influences
beyond
morphology.
Similarity
composition
predicted
functions
evaluated
among
individuals
within
a
single
or
each
morph.
Higher
similarity
inferred
found
identical
clones
other
unique
genotypes.
Additionally,
diversity
differed
significantly
between
two
related
with
one
trait
(haptera).
Thus,
factors
(e.g.
secondary
metabolite
production)
likely
drive
differences
microbial
communities
morphs.
The
strong
association
microbiome
here
highlights
importance
genetic
relatedness
hosts
determining
variability
symbionts.
Marine and Freshwater Research,
Journal Year:
2023,
Volume and Issue:
74(12), P. 1003 - 1025
Published: July 19, 2023
Context
Gamay
is
a
coastal
waterway
of
immense
social,
cultural
and
ecological
value.
Since
European
settlement,
it
has
become
hub
for
industrialisation
human
modification.
There
growing
desire
ecosystem-level
management
urban
waterways,
but
such
efforts
are
often
challenged
by
lack
integrated
knowledge.
Aim
methods
We
systematically
reviewed
published
literature
traditional
knowledge
(TEK),
consulted
scientists
to
produce
review
that
synthesises
Gamay’s
aquatic
ecosystem
identify
gaps
future
research
opportunities.
Key
results
found
577
resources
on
Gamay,
which
over
70%
focused
ecology.
Intertidal
rocky
shores
were
the
most
studied
habitat,
focusing
invertebrate
communities.
Few
studies
considered
multiple
habitats
or
taxa.
Studies
investigating
cumulative
impacts,
long-term
trends
habitat
connectivity
lacking,
broader
role
artificial
substrate
as
in
poorly
understood.
TEK
remains
significant
gap.
Habitat
restoration
shown
promising
could
provide
opportunities
improve
affected
future.
Conclusion
implications
This
highlights
extensive
amount
exists
also
identifies
key
need
be
filled
effective
management.
Trends in Microbiology,
Journal Year:
2023,
Volume and Issue:
32(2), P. 190 - 199
Published: Aug. 25, 2023
Marine
species,
such
as
corals
and
kelp,
are
responding
to
climate
change
by
altering
their
distributions.
Microbial
biofilms
underpin
key
processes
that
affect
the
establishment,
maintenance,
function
of
these
dominant
habitat-formers.
Climate-mediated
changes
microbial
can
therefore
strongly
influence
species'
range
shifts.
Here,
we
review
emerging
research
on
interactions
between
benthic
habitat-formers
identify
two
areas
interaction
where
impact
this
dynamic:
(i)
via
direct
effects
biofilm
composition,
(ii)
impacts
complex
feedback
loops
which
exist
microbes
habitat-forming
organisms.
We
propose
will
be
fundamental
in
driving
speed
extent
tropicalisation
coastal
ecosystems
under
change.
Marine Biology Research,
Journal Year:
2023,
Volume and Issue:
19(4-5), P. 219 - 233
Published: May 28, 2023
Seaweed
associated
bacteria
can
be
exploited
for
sustainable
production
and
conservation
of
seaweeds,
although
limited
information
exists
in
several
coastal
waters
West
Africa.
Here,
the
diversity
abundance
on
five
Sargassum
vulgare,
Padina
durvillaei,
Hydropuntia
dentata,
Hypnea
musciformis
Ulva
fasciata,
surrounding
seawaters
across
sites
Central
Western
regions
Ghana
were
investigated.
Biochemical
tests
MALDI–TOF
identification
system
used
to
determine
seaweeds
seawater.
A
total
530
bacterial
isolates,
belonging
28
species
(and
mostly
Proteobacteria
Firmicutes)
identified.
higher
was
found
with
(83%)
than
seawater
(17%).
Bacterial
composition
similar
among
taxonomically-related
seaweeds.
The
brown
(S.
vulgare)
red
(H.
musciformis)
recorded
most
least
diverse
assemblage,
respectively.
Seasonally,
marginally
wet
season.
study
provides
important
baseline
spatial,
temporal
taxonomic
distribution
commercially
valuable
seaweed
areas
Ghana.
results
are
also
exploitation
these
macroalgae
elsewhere.
European Journal of Phycology,
Journal Year:
2022,
Volume and Issue:
58(3), P. 268 - 283
Published: Aug. 30, 2022
Over
90%
of
introduced
marine
species
are
seaweeds.
Seaweeds
rely
on
their
microbiome
for
host
settlement,
nutrition,
development
and
health.
As
such,
it
is
likely
that
microbiomes
involved
in
seaweed
invasions.
Sargassum
muticum,
indigenous
to
Southeast
Asia,
inhabits
the
North-east
Atlantic
from
Norway
Morocco.
This
only
known
successful
case
a
non-clonal
invader
with
almost
no
genetic
variation
over
its
large
NE
range.
makes
very
interesting
model
study
an
invasive
seaweeds
microbiome,
as
practically
uncouples
variation.
Associated
bacteria
potentially
contribute
plasticity
acclimation
S.
muticum
leading
success
last
50
years.
Dispersing
organisms
can
either
bring
acquired
microbes
along
or
obtain
new
ones
locally,
following
mutualist
generalist
hypothesis,
respectively.
We
used
partial
16S
rRNA
gene
amplicon
sequencing
characterize
total
core
across
structures/tissues
five
regions,
Morocco,
covering
30°
latitude.
In
contrast
genotypes,
highly
diverse,
regional,
microbiomes,
differentiation
levels
depending
tissue,
bacterial
community
structure
were
detected.
follows
possibly
recruiting
each
region.
promiscuity
may
promote
invasiveness
muticum.
Diversity
was
lower
young/annual
tissues
compared
older
community,
suggesting
these
mostly
transitory
accumulating
time
parts.
The
included
10
OTUs,
representing
dominant
members
commonly
found
other
seaweeds'
cores.
Granulosicoccus
OTU
followed
clear
regional
pattern
where
northern
southern
regions
clustered
differentially,
signature
even
at
level.HIGHLIGHTS
(NE)
does
not
match
background.NE
shows
geographic
region
tissue-specific
matching
bestthe
hypothesis.Core
–
bacterium
strong
specialization.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: April 4, 2024
Abstract
Giant
kelp
(
Macrocystis
pyrifera
)
is
a
photosynthetic
macroalga
that
produces
dissolved
organic
carbon
(DOC),
essential
for
marine
bacteria
and
food
webs.
The
bacterial
communities
residing
on
giant
blades
consume
compete
complex
carbohydrates,
contributing
to
the
microbiome
community
structure.
In
this
study,
we
investigate
how
changes
in
response
age
depth
of
assess
these
relate
differences
host’s
photophysiology.
We
find
microbial
increases
richness
evenness
as
age.
While
microbiomes
juvenile
are
stochastic,
mature
coalesce
into
less
variable,
depth-specific
types.
Differentially
abundant
genera
include
members
Bacteroidia
Gammaproteobacteria
,
known
carbohydrate
degradation,
Planctomycetes
which
often
produce
protective
secondary
metabolites.
These
shifts
associated
with
increased
maximum
quantum
yield
photosystem
II
blades;
therefore,
they
may
be
linked
enhanced
DOC
exudation.
By
shedding
light
dynamics,
our
study
contributes
better
understanding
interplay
between
macroalgae,
their
respective
microbiomes,
surrounding
environment.