Holo-omic applications to unveil microbiome shaping sustainable horticultural production DOI Creative Commons
Mohamed Ait-El-Mokhtar, Marouane Baslam

Frontiers in Sustainable Food Systems, Journal Year: 2023, Volume and Issue: 7

Published: June 5, 2023

Plant-associated microorganisms play a key role in the future sustainability of terrestrial ecosystems. In nature, plants and their associated microbiome can form an assemblage species, considered interacting metaorganisms or holobionts. Horticultural plants, including vegetables, fruit berries, ornamentals live intimate association with complex diverse microbial communities that have evolved myriad cooperative competitive interaction mechanisms shape holobiont fitness. Nonetheless, our understanding these interactions shaping more horticulture communities, along relevance for host growth, fitness, stress resilience, health natural context remains sparse. this perspective, holo-omic landscape requires careful consideration study design integrates multi-omic data from both microbiota domains is promising approach to unveil interplay between two advance horticultural production. The analysis (meta)-omics phenotyping, mechanistic experiments model systems, revolutionizing research by enhancing ability understand structure core function plant-associated microbiome. These advancements are complemented improvements throughput accuracy DNA sequencing, enabling us delve deeper into genomes communities. Yet, many challenges remain. We focus review on potential holo-omics generate holistic perspective molecular networks, we further discuss implementation current limitations within horticulture. argue will pave way improve, food security safety, sustainability, breeding practices, development microbiota- host-tailored crops’ treatments increasing production efficiency.

Language: Английский

Plant–microbiome interactions and their impacts on plant adaptation to climate change DOI Open Access
Qing Zeng, Hang‐Wei Hu, An‐Hui Ge

et al.

Journal of Integrative Plant Biology, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 21, 2025

ABSTRACT Plants have co‐evolved with a wide range of microbial communities over hundreds millions years, this has drastically influenced their adaptation to biotic and abiotic stress. The rapid development multi‐omics approaches greatly improved our understanding the diversity, composition, functions plant microbiomes, but how global climate change affects assembly microbiomes roles in regulating host changing environmental conditions is not fully known. In review, we summarize recent advancements community responses factors such as elevated CO 2 levels, warming, drought. We further delineate research trends hotspots plant–microbiome interactions context change, key mechanisms by which influence climate. propose that future urgently needed unravel impact genes signal molecules modulated on communities, elucidate evolutionary response plant–microbe at level, engineer synthetic mitigate effects fitness.

Language: Английский

Citations

0
The dynamics of bacterial communities during leaf decomposition of various species combinations in riparian forest buffers in China DOI
Zhangting Chen, Muhammad Arif

Forest Ecology and Management, Journal Year: 2025, Volume and Issue: 584, P. 122607 - 122607

Published: March 2, 2025

Language: Английский

Citations

0
Antarctic Endophytic Fungi Enhance Strawberry Resilience to Drought and Heat Stress by Modulating Aquaporins and Dehydrins DOI Creative Commons

María Alejandra Yáñez,

Sebastián Flores,

Francisca Hormazábal-Abarza

et al.

Plant Stress, Journal Year: 2025, Volume and Issue: unknown, P. 100805 - 100805

Published: March 1, 2025

Language: Английский

Citations

0
Drivers of fungal and bacterial communities in ectomycorrhizospheres of birch, oak, and pine in a former uranium mining site, Ronneburg, Germany DOI Creative Commons
Olga Bogdanova, Katrin Krause,

Sebastian Pietschmann

et al.

Environmental Science and Pollution Research, Journal Year: 2025, Volume and Issue: unknown

Published: April 2, 2025

Language: Английский

Citations

0
Bacterial boost: improving Atriplex nummularia phytoremediation of saline soils through bacterial inoculation DOI

Carolline S. Fazolato,

Maria Sallydelândia de Farias Araújo, Luiz Fernando Martins

et al.

Plant and Soil, Journal Year: 2025, Volume and Issue: unknown

Published: April 26, 2025

Language: Английский

Citations

0
Soil bacterial community composition is more stable in kiwifruit orchards relative to phyllosphere communities over time DOI Creative Commons
Ziva Louisson, Louis Ranjard, Hannah L. Buckley

et al.

Environmental Microbiome, Journal Year: 2023, Volume and Issue: 18(1)

Published: Aug. 24, 2023

Abstract Background Soil and phyllosphere (leaves fruit) microbes play critical roles in the productivity health of crops. However, microbial community dynamics are currently understudied orchards, with a limited number incorporating temporal monitoring. We used 16S rRNA gene amplicon sequencing to investigate bacterial assembly processes on leaves fruit, soil 12 kiwifruit orchards across cropping season New Zealand. Results Community composition significantly differed ( P < 0.001) among three sample types. communities substrates more closely resembled each other, relative soil. There was stability composition, residing low similarity between belowground aboveground communities. Bacteria were influenced by deterministic processes, while stochastic important for phyllosphere. Conclusions The higher variability nature observed highlights why predicting responsiveness environmental change, or likelihood pathogen invasion, can be challenging. influence selection suggests greater potential their prediction reliable manipulation.

Language: Английский

Citations

8
Editorial: Theme issue on the ecology of soil microorganisms DOI Creative Commons
Petr Baldrián, Taina Pennanen, Petr Kohout

et al.

FEMS Microbiology Ecology, Journal Year: 2024, Volume and Issue: 100(4)

Published: March 12, 2024

Inoculation of common bean seed with diversified bacterial synthetic communities can induce deep modifications both and seedling microbiota, even in living potting soil.

Language: Английский

Citations

0
Holo-omic applications to unveil microbiome shaping sustainable horticultural production DOI Creative Commons
Mohamed Ait-El-Mokhtar, Marouane Baslam

Frontiers in Sustainable Food Systems, Journal Year: 2023, Volume and Issue: 7

Published: June 5, 2023

Plant-associated microorganisms play a key role in the future sustainability of terrestrial ecosystems. In nature, plants and their associated microbiome can form an assemblage species, considered interacting metaorganisms or holobionts. Horticultural plants, including vegetables, fruit berries, ornamentals live intimate association with complex diverse microbial communities that have evolved myriad cooperative competitive interaction mechanisms shape holobiont fitness. Nonetheless, our understanding these interactions shaping more horticulture communities, along relevance for host growth, fitness, stress resilience, health natural context remains sparse. this perspective, holo-omic landscape requires careful consideration study design integrates multi-omic data from both microbiota domains is promising approach to unveil interplay between two advance horticultural production. The analysis (meta)-omics phenotyping, mechanistic experiments model systems, revolutionizing research by enhancing ability understand structure core function plant-associated microbiome. These advancements are complemented improvements throughput accuracy DNA sequencing, enabling us delve deeper into genomes communities. Yet, many challenges remain. We focus review on potential holo-omics generate holistic perspective molecular networks, we further discuss implementation current limitations within horticulture. argue will pave way improve, food security safety, sustainability, breeding practices, development microbiota- host-tailored crops’ treatments increasing production efficiency.

Language: Английский

Citations

1