Exploring differentially expressed genes and associated biological processes across embryos with different seed dormancy in barley (Hordeum vulgare) DOI Creative Commons
Yuta Aoyagi Blue, Hideki Hirakawa, Youko Oono

et al.

Crop Science, Journal Year: 2025, Volume and Issue: 65(1)

Published: Jan. 1, 2025

Abstract Barley ( Hordeum vulgare ) has a wide range of seed dormancy. Seed dormancy is crucial trait for plant survival and crop production. To explore genes functions associated with the difference in barley dormancy, we performed differentially expressed gene ontology (GO) enrichment analyses on embryos from wild accession H602 strong cultivated malting Kanto Nakate Gold (KNG) weak reciprocal crosses between two × KNG H602. RNA was extracted seeds harvested at physiological maturity dried 1 week. We also assessed expression levels known quantitative locus linked to In KNG, 417 showed significantly higher than H602, 14 GO terms enriched, including stress response sugar metabolism. Genes involved DNA repair were enriched highly KNG. 198 60 development auxin transport. translation Our findings indicated that abiotic response, metabolism, would be whereas barley.

Language: Английский

Starch biosynthesis in cereal endosperms: An updated review over the last decade DOI Creative Commons
Li‐Chun Huang,

Hongyan Tan,

Changquan Zhang

et al.

Plant Communications, Journal Year: 2021, Volume and Issue: 2(5), P. 100237 - 100237

Published: Sept. 1, 2021

Starch is a vital energy source for living organisms and key raw material additive in the food non-food industries. has received continuous attention multiple research fields. The endosperm of cereals (e.g., rice, corn, wheat, barley) most important site synthesis storage starch. Around 2010, several excellent reviews summarized progress various fields starch research, serving as references subsequent research. In past 10 years, many achievements have been made study regulation cereals. present review provides an update on cereal endosperms over decade, focusing new enzymes non-enzymatic proteins involved synthesis, regulatory networks use elite alleles synthesis-related genes breeding programs. We also provide perspectives future directions that will further our understanding biosynthesis to support rational design ideal quality grain.

Language: Английский

Citations

190
ABA Metabolism and Homeostasis in Seed Dormancy and Germination DOI Open Access
Naoto Sano, Annie Marion‐Poll

International Journal of Molecular Sciences, Journal Year: 2021, Volume and Issue: 22(10), P. 5069 - 5069

Published: May 11, 2021

Abscisic acid (ABA) is a key hormone that promotes dormancy during seed development on the mother plant and after dispersal participates in control of release germination response to environmental signals. The modulation ABA endogenous levels largely achieved by fine-tuning, different tissues, synthesis cleavage carotenoid precursors inactivation 8′-hydroxylation. In this review, we provide an overview current knowledge metabolism developing germinating seeds; notably, how signals such as light, temperature nitrate through adjustment levels. A number regulatory factors have been recently identified which functional relationships with major transcription factors, INSENSITIVE3 (ABI3), ABI4 ABI5, essential role increasing importance epigenetic mechanisms regulation gene expression also described. last section, give natural variations genes their effects germination, could be useful both future studies better understand identify candidates breeding materials for improving properties.

Language: Английский

Citations

155
Large-scale integration of meta-QTL and genome-wide association study discovers the genomic regions and candidate genes for yield and yield-related traits in bread wheat DOI
Yang Yang, Aduragbemi Amo, Di Wei

et al.

Theoretical and Applied Genetics, Journal Year: 2021, Volume and Issue: 134(9), P. 3083 - 3109

Published: June 17, 2021

Language: Английский

Citations

103
Exploring fine tuning between phytohormones and ROS signaling cascade in regulation of seed dormancy, germination and seedling development DOI
Shalini Jhanji,

Eena Goyal,

Manisha Chumber

et al.

Plant Physiology and Biochemistry, Journal Year: 2024, Volume and Issue: 207, P. 108352 - 108352

Published: Jan. 21, 2024

Language: Английский

Citations

15
Linkage and association analysis to identify wheat pre-harvest sprouting resistance genetic regions and develop KASP markers DOI

Pengbo Song,

Yueyue Li, Xiaoxiao Wang

et al.

Molecular Breeding, Journal Year: 2025, Volume and Issue: 45(1)

Published: Jan. 1, 2025

Language: Английский

Citations

1
Haplotype Analysis and Gene Pyramiding for Pre-Harvest Sprouting Resistance in White-Grain Wheat DOI Open Access
Haibin Dong,

Cheng Kou,

Lin Hu

et al.

International Journal of Molecular Sciences, Journal Year: 2025, Volume and Issue: 26(2), P. 728 - 728

Published: Jan. 16, 2025

The Huanghuai winter wheat region, China's primary wheat-producing area, predominantly cultivates white-grained wheat. Pre-harvest sprouting (PHS) significantly impacts yield and quality, making the breeding of PHS-resistant varieties crucial for ensuring production security. This study evaluated PHS rate 344 over two consecutive growing seasons (2022/2023 2023/2024). Furthermore, it analyzed effects allelic variations their combinations in six genes (Tamyb10, TaDFR, TaMKK3-A, TaGASR34, Tasdr, TaMFT) on resistance. Results revealed average rates 66.1% 64.4% seasons, with coefficients variation 39.1% 40.2%, respectively, a narrow-sense heritability 0.72. These findings indicate substantial genetic relatively high stability within tested materials. Among molecular markers examined, superior haplotype GS34-7Bb exhibited lowest (41.9%) demonstrating strongest Analysis different identified advantageous genotypes resistance wheat: TaMKK3-Ab + Tasdr-2Aa TaMFT-A1b (average rate: 20.8%) Tasdr-2Ab 34.2%). Notably, distribution frequency haplotypes PHS-related these showed varying degrees decline time.

Language: Английский

Citations

1
Unraveling Allelic Impacts on Pre-Harvest Sprouting Resistance in TaVP1-B of Chinese Wheat Accessions Using Pan-Genome DOI Creative Commons
Danfeng Wang,

Xie Jin-jin,

Jingwen Wang

et al.

Plants, Journal Year: 2025, Volume and Issue: 14(4), P. 504 - 504

Published: Feb. 7, 2025

The TaVP1-B gene, located on the 3B chromosome of wheat, is a homolog Viviparous-1 (VP-1) gene maize and was reported to confer resistance pre-harvest sprouting (PHS) in wheat. In this study, structure analyzed using wheat pan-genome consisting 20 released cultivars (19 are from China), 3 single nucleotide polymorphisms (SNPs), which were identified at 496 bp, 524 1548 bp CDS region, respectively. Haplotypes analysis showed that these SNPs complete linkage disequilibrium only two haplotypes designated as hap1 (TGG) hap2 (GAA) present. Association between PHS four experiment environments revealed average accessions with significantly better than hap2, infers effects resistance. To further investigate impacts alleles locus resistance, SNP region converted KASP marker, used for genotyping 304 Chinese cultivars, whose evaluated three environments. rates (SRs) 135 lower 169 validating present study provided breeding-friendly marker functional variants can be genetic improvement

Language: Английский

Citations

1
Seed Dormancy and Pre-Harvest Sprouting in Rice—An Updated Overview DOI Open Access
Soo-In Sohn, Subramani Pandian, Senthil Kumar Thamilarasan

et al.

International Journal of Molecular Sciences, Journal Year: 2021, Volume and Issue: 22(21), P. 11804 - 11804

Published: Oct. 30, 2021

Pre-harvest sprouting is a critical phenomenon involving the germination of seeds in mother plant before harvest under relative humid conditions and reduced dormancy. As it results grain yield quality, common problem for farmers who have cultivated rice wheat across globe. Crop yields need to be steadily increased improve people's ability adapt risks as world's population grows natural disasters become more frequent. To quality avoid pre-harvest sprouting, clear understanding crops should known with use molecular omics approaches. Meanwhile, complicated phenomenon, especially rice, physiological, hormonal, genetic changes monitored, which can modified by high-throughput metabolic engineering techniques. The integration these data allows creation tailored breeding lines suitable various demands regions, crucial increasing crop economic benefits. In this review, we provided an overview seed dormancy its regulation, major causes also unraveled novel avenues battle cereals special reference using genomics transcriptomic

Language: Английский

Citations

54
Meta-QTLs, ortho-MQTLs, and candidate genes for thermotolerance in wheat (Triticum aestivum L.) DOI

Sourabh Kumar,

Vivudh Pratap Singh, Dinesh Kumar Saini

et al.

Molecular Breeding, Journal Year: 2021, Volume and Issue: 41(11)

Published: Nov. 1, 2021

Language: Английский

Citations

50
ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice DOI
Yi Chen, Zhipan Xiang, Min Liu

et al.

Plant Cell & Environment, Journal Year: 2022, Volume and Issue: 46(4), P. 1384 - 1401

Published: Nov. 2, 2022

Preharvest sprouting (PHS) is an unfavorable trait in cereal crops and causes serious yield loss. However, the molecular mechanism underlying PHS remains largely elusive. Here, we identified a member of 9-cis-epoxycarotenoid dioxygenase family, OsNCED3, which regulates grain development rice (Oryza sativa L.). OsNCED3 encodes chloroplast-localized abscisic acid (ABA) biosynthetic enzyme highly expressed embryo developing seeds. Disruption by CRISPR/Cas9-mediated mutagenesis led to lower ABA higher gibberellic (GA) levels (thus skewed ABA/GA ratio) embryo, promoting embryos growth breaking seed dormancy before maturity harvest, thus decreased enhanced rice. overexpression resistance regulating proper ratio embryo. Intriguingly, resulted increased size weight, whereas disruption function weight. Nucleotide diversity analyses suggested that may be selected during japonica populations adaptation germination. Taken together, have new OsNCED regulator involved development, provide potential target gene for improving

Language: Английский

Citations

36