Microorganisms, Journal Year: 2024, Volume and Issue: 12(12), P. 2416 - 2416
Published: Nov. 25, 2024
Sunflower
Language: Английский
Frontiers in Microbiology, Journal Year: 2024, Volume and Issue: 15
Published: May 27, 2024
Plant-microbe interactions are pivotal for ecosystem dynamics and sustainable agriculture, influenced by various factors, such as host characteristics, environmental conditions, human activities. Omics technologies, including genomics, transcriptomics, proteomics, metabolomics, have revolutionized our understanding of these interactions. Genomics elucidates key genes, transcriptomics reveals gene expression dynamics, proteomics identifies essential proteins, metabolomics profiles small molecules, thereby offering a holistic perspective. This review synthesizes diverse microbial-plant interactions, showcasing the application omics in mechanisms, nitrogen fixation, systemic resistance induction, mycorrhizal association, pathogen-host Despite challenges data integration ethical considerations, approaches promise advancements precision intervention resilient agricultural practices. Future research should address challenges, enhance technology resolution, explore epigenomics, understand plant-microbe under conditions. In conclusion, technologies hold immense optimizing strategies fortifying alliances, paving way agriculture stewardship.
Language: Английский
Citations
18
Global Change Biology, Journal Year: 2025, Volume and Issue: 31(2)
Published: Feb. 1, 2025
Understanding the intricate interplay between plant and soil microbiomes their effects on growth productivity is vital in a rapidly changing climate. This review explores interconnected impacts of climate change plant-soil profound agricultural productivity. The ongoing rise global temperatures, shifting precipitation patterns extreme weather events significantly affect composition function microbial communities rhizosphere. Changes diversity activity due to rising temperatures impact nutrient cycling, enzyme synthesis, health pest disease management. These changes also influence dynamics microbe capability promote health. As changes, plants' adaptive capacity partners become increasingly crucial for sustaining agriculture. Mitigating adverse requires comprehensive understanding mechanisms driving these processes. It highlights various strategies mitigating adapting environmental challenges, including management, stress-tolerant crops, cover cropping, sustainable land water crop rotation, organic amendments development climate-resilient varieties. emphasises need further exploration within broader context change. Promising mitigation strategies, precision agriculture targeted microbiome modifications, offer valuable pathways future research practical implementation food security
Language: Английский
Citations
3
Microorganisms, Journal Year: 2024, Volume and Issue: 12(3), P. 510 - 510
Published: March 2, 2024
Food security is an urgent global challenge, with cereals playing a crucial role in meeting the nutritional requirements of populations worldwide. In recent years, field metagenomics has emerged as powerful tool for studying microbial communities associated cereal crops and their impact on plant health growth. This chapter aims to provide comprehensive overview its enhancing food through exploration beneficial pathogenic interactions. Furthermore, we will examine how integration other tools can effectively address adverse effects security. For this purpose, discuss metagenomic data machine learning providing novel insights into dynamic interactions shaping plant-microbe relationships. We also shed light potential applications leveraging diversity epigenetic modifications improving crop resilience yield sustainability. Ultimately, revolutionized by harnessing between microbiota, paving way sustainable agricultural practices.
Language: Английский
Citations
12
Symbiosis, Journal Year: 2024, Volume and Issue: 93(2), P. 125 - 138
Published: May 28, 2024
Language: Английский
Citations
4
Phytochemistry Reviews, Journal Year: 2025, Volume and Issue: unknown
Published: Feb. 14, 2025
Language: Английский
Citations
0
The Science of The Total Environment, Journal Year: 2025, Volume and Issue: 968, P. 178872 - 178872
Published: Feb. 18, 2025
Language: Английский
Citations
0
Cleaner and Circular Bioeconomy, Journal Year: 2025, Volume and Issue: unknown, P. 100142 - 100142
Published: Feb. 1, 2025
Language: Английский
Citations
0
Molecules, Journal Year: 2025, Volume and Issue: 30(5), P. 1028 - 1028
Published: Feb. 24, 2025
This paper reviewed the diversity of endophytic fungi and their interactions with medicinal plants, along research methodologies utilized to investigate these interactions. It mainly includes fungi, as well distribution diversity, species metabolites functions, including antibacterial, anti-inflammatory, anti-tumor, insecticidal, antioxidant capabilities, so on. The employed between plants are categorized into metagenomics, transcriptomics, metatranscriptomics, proteomics, metabolomics. Furthermore, this study anticipates potential applications secondary derived from in both medicine agriculture.
Language: Английский
Citations
0
Scientific Data, Journal Year: 2025, Volume and Issue: 12(1)
Published: March 1, 2025
Abstract Binning is a crucial process in metagenomics studies, where sequenced reads are combined to form longer contigs and assigned individual genomes. Conventional methods, such as shotgun binning, rely on similarity measurements abundance profiles across multiple samples. However, cost constraints for sequencing limited sample collection capacity hinder their effectiveness. High-throughput chromosome conformation capture (Hi-C), DNA proximity ligation technique, has been adapted accurately bin metagenome-assembled genomes (MAGs) from single sample, addressing challenges like chimeric MAGs. In this study, we generated over 190 Gb of metagenomic data wheat rhizospheres grown two highly calcareous soils South Australian region compared conventional Hi-C binning methods. Two metagenomes libraries were generated, assembling 1089 MAGs 39 bacterial one archaeal taxon, including 94 based bins. performed using only short read sequences was prone high contamination, while the addition improved MAG quality identified mobile element-host-infection interaction. This dataset provides important tools studying microbial communities rhizosphere soils.
Language: Английский
Citations
0
Physiological and Molecular Plant Pathology, Journal Year: 2025, Volume and Issue: 138, P. 102639 - 102639
Published: March 1, 2025
Language: Английский
Citations
0