The gene function prediction challenge: Large language models and knowledge graphs to the rescue DOI

Rohan Shawn Sunil,

Shan Chun Lim,

Manoj Itharajula

et al.

Current Opinion in Plant Biology, Journal Year: 2024, Volume and Issue: 82, P. 102665 - 102665

Published: Nov. 22, 2024

Language: Английский

Unravelling sorghum functional genomics and molecular breeding: past achievements and future prospects DOI Creative Commons
Fangyuan Liu,

Baye Wodajo,

Kangxu Zhao

et al.

Journal of genetics and genomics/Journal of Genetics and Genomics, Journal Year: 2024, Volume and Issue: unknown

Published: July 1, 2024

Sorghum, renowned for its substantial biomass production and remarkable tolerance to various stresses, possesses extensive gene resources phenotypic variations. A comprehensive understanding of the genetic basis underlying complex agronomic traits is essential unlocking potential sorghum in addressing food feed security utilizing marginal lands. In this context, we provide an overview major trends genomic resource studies focusing on key over past decade, accompanied by a summary functional platforms. We also delve into molecular functions regulatory networks impactful genes important agricultural traits. Lastly, discuss synthesize current challenges prospects advancing design breeding gene-editing polymerization excellent alleles, with aim accelerating development desired varieties.

Language: Английский

Citations

6
Detecting novel plant pathogen threats to food system security by integrating the Plant Reactome and remote sensing DOI
Seth C. Murray, Aart Verhoef, Alper Adak

et al.

Current Opinion in Plant Biology, Journal Year: 2025, Volume and Issue: 83, P. 102684 - 102684

Published: Jan. 5, 2025

Language: Английский

Citations

0
Transcriptional Modulation during Photomorphogenesis in Rice Seedlings DOI Open Access
Parul Gupta, Pankaj Jaiswal

Genes, Journal Year: 2024, Volume and Issue: 15(8), P. 1072 - 1072

Published: Aug. 14, 2024

Light is one of the most important factors regulating plant gene expression patterns, metabolism, physiology, growth, and development. To explore how light may induce or alter transcript splicing, we conducted RNA-Seq-based transcriptome analyses by comparing samples harvested as etiolated seedlings grown under continuous dark conditions vs. light-treated green seedlings. The study aims to reveal differentially regulated protein-coding genes novel long noncoding RNAs (lncRNAs), their light-induced alternative association with biological pathways. We identified 14,766 expressed genes, which 4369 showed splicing. observed that mapped plastid-localized methyl-erythritol-phosphate (MEP) pathway were light-upregulated compared cytosolic mevalonate (MVA) genes. Many these also undergo These pathways provide crucial metabolite precursors for biosynthesis secondary metabolic compounds needed chloroplast biogenesis, establishment a successful photosynthetic apparatus, photomorphogenesis. In chromosome-wide survey transcriptome, intron retention predominant splicing event. addition, 1709 lncRNA transcripts in our data. This provides insights on light-regulated rice.

Language: Английский

Citations

2
The gene function prediction challenge: Large language models and knowledge graphs to the rescue DOI

Rohan Shawn Sunil,

Shan Chun Lim,

Manoj Itharajula

et al.

Current Opinion in Plant Biology, Journal Year: 2024, Volume and Issue: 82, P. 102665 - 102665

Published: Nov. 22, 2024

Language: Английский

Citations

0