Transcriptomic neuron types vary topographically in function and morphology
Nature,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 12, 2025
Abstract
Neuronal
phenotypic
traits
such
as
morphology,
connectivity
and
function
are
dictated,
to
a
large
extent,
by
specific
combination
of
differentially
expressed
genes.
Clusters
neurons
in
transcriptomic
space
correspond
distinct
cell
types
some
cases—for
example,
Caenorhabditis
elegans
1
retinal
ganglion
cells
2–4
—have
been
shown
share
morphology
function.
The
zebrafish
optic
tectum
is
composed
spatial
array
that
transforms
visual
inputs
into
motor
outputs.
Although
the
visuotopic
map
continuous,
subregions
functionally
specialized
5,6
.
Here,
uncover
cell-type
architecture
tectum,
we
transcriptionally
profiled
its
neurons,
revealing
more
than
60
organized
anatomical
layers.
We
measured
responses
thousands
tectal
two-photon
calcium
imaging
matched
them
with
their
transcriptional
profiles.
Furthermore,
characterized
morphologies
identified
using
transgenic
lines.
Notably,
found
similar
can
diverge
shape,
responses.
Incorporating
coordinates
within
volume
revealed
morphologically
defined
subclusters
individual
clusters.
Our
findings
demonstrate
extrinsic,
position-dependent
factors
expand
repertoire
genetically
neurons.
Language: Английский
Retinal input integration in excitatory and inhibitory neurons in the mouse superior colliculus in vivo
eLife,
Journal Year:
2023,
Volume and Issue:
12
Published: Sept. 8, 2023
The
superior
colliculus
(SC)
is
a
midbrain
structure
that
receives
inputs
from
retinal
ganglion
cells
(RGCs).
SC
contains
one
of
the
highest
densities
inhibitory
neurons
in
brain
but
whether
excitatory
and
differentially
integrate
activity
vivo
still
largely
unknown.
We
recently
established
recording
approach
to
measure
RGCs
simultaneously
with
their
postsynaptic
targets
vivo,
study
how
RGC
activity.
Here,
we
employ
this
method
investigate
functional
properties
govern
retinocollicular
signaling
cell
type-specific
manner
by
identifying
GABAergic
using
optotagging
VGAT-ChR2
mice.
Our
results
demonstrate
both
receive
comparably
strong
similar
wiring
rules
apply
for
innervation
types,
unlike
connectivity
thalamocortical
system.
Moreover,
contributed
more
spiking
compared
neurons.
This
deepens
our
understanding
emphasizes
two
major
areas
visual
processing,
cortex
SC,
differently
sensory
afferent
inputs.
Language: Английский
Retinal input integration in excitatory and inhibitory neurons in the mouse superior colliculusin vivo
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: April 8, 2023
ABSTRACT
The
superior
colliculus
(SC)
is
a
midbrain
structure
that
contains
one
of
the
highest
densities
inhibitory
neurons
in
brain
and,
together
with
thalamocortical
visual
system,
it
plays
key
role
visually
guided
behaviors.
SC
receives
direct
inputs
from
retinal
ganglion
cells
(RGCs)
but
whether
excitatory
and
differentially
integrate
activity
vivo
still
largely
unknown.
We
recently
established
an
extracellular
recording
approach
using
high-density
electrodes
to
measure
RGCs
simultaneously
their
postsynaptic
targets
,
allows
addressing
how
RGC
activity.
Here,
we
employ
this
method
study
functional
properties
dynamics
govern
retinocollicular
signaling
cell-type
specific
manner
by
identifying
GABAergic
optotagging
anesthetized
VGAT-
ChR2
mice.
measured
305
monosynaptically
connected
RGC-SC
pairs,
out
which
approximately
third
afferents
connect
onto
neurons.
show
both
receive
comparably
strong
inputs,
functionally
similar
pairs
showing
stronger
connections.
Our
results
demonstrate
wiring
rules
apply
for
innervation
neurons,
unlike
connectivity
system.
Contrasting
connection
strength,
observed
contributed
more
than
This
implies
are
specifically
coupled
afferent
while
may
additional
other
sources.
Taken
together,
our
deepens
understanding
emphasizes
two
major
areas
processing,
cortex
colliculus,
differently
sensory
inputs.
Language: Английский
Multipotent Progenitors Instruct Ontogeny of the Superior Colliculus
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: April 16, 2023
SUMMARY
The
superior
colliculus
(SC)
in
the
mammalian
midbrain
is
essential
for
multisensory
integration,
attention,
and
complex
behavior
(Basso
May,
2017;
Cang
et
al.,
2018).
mature
SC
cytoarchitecture
organized
into
distinct
laminae
composed
of
a
rich
variety
neuronal
glial
cell
types
(Ayupe
2023;
Edwards
1986;
2006;
Xie
2021;
Zeisel
Precise
execution
developmental
programs
regulating
generation
cell-type
diversity
essential,
because
deficits
due
to
genetic
mutations
have
been
associated
with
neurodevelopmental
diseases
dysfunction
(Jure,
2018;
McFadyen
2020).
However,
fundamentals
directing
ontogeny
are
not
well
understood.
Here
we
pursued
systematic
lineage
tracing
at
single
progenitor
level
order
decipher
principles
instructing
SC.
We
combined
silico
reconstruction
novel
MADM
(Mosaic
Analysis
Double
Markers)-CloneSeq
approach.
MADM-CloneSeq
enables
unequivocal
delineation
lineages
situ
,
identity
based
on
global
transcriptome,
individual
clonally-related
cells.
Our
reconstructions
revealed
that
all
emerge
from
local
progenitors
without
any
extrinsic
source.
Strikingly,
exceptionally
multipotent
capacity
produce
known
excitatory
inhibitory
neuron
prospective
SC,
clonal
units
showing
no
pre-defined
composition.
At
molecular
identified
an
role
PTEN
signaling
establishing
appropriate
proportions
specific
types.
Collectively,
our
findings
demonstrate
generate
full
spectrum
developing
providing
framework
emergence
thus
Language: Английский
Retinal input integration in excitatory and inhibitory neurons in the mouse superior colliculus in vivo
eLife,
Journal Year:
2023,
Volume and Issue:
12
Published: June 2, 2023
The
superior
colliculus
(SC)
is
a
midbrain
structure
that
receives
inputs
from
retinal
ganglion
cells
(RGCs).
SC
contains
one
of
the
highest
densities
inhibitory
neurons
in
brain
but
whether
excitatory
and
differentially
integrate
activity
vivo
still
largely
unknown.
We
recently
established
recording
approach
to
measure
RGCs
simultaneously
with
their
postsynaptic
targets
vivo,
study
how
RGC
activity.
Here,
we
employ
this
method
investigate
functional
properties
govern
retinocollicular
signaling
cell
type-specific
manner
by
identifying
GABAergic
using
optotagging
VGAT-ChR2
mice.
Our
results
demonstrate
both
receive
comparably
strong
similar
wiring
rules
apply
for
innervation
types,
unlike
connectivity
thalamocortical
system.
Moreover,
contributed
more
spiking
compared
neurons.
This
deepens
our
understanding
emphasizes
two
major
areas
visual
processing,
cortex
SC,
differently
sensory
afferent
inputs.
Language: Английский
Retinal input integration in excitatory and inhibitory neurons in the mouse superior colliculus in vivo
Published: June 2, 2023
The
superior
colliculus
(SC)
is
a
midbrain
structure
that
contains
one
of
the
highest
densities
inhibitory
neurons
in
brain
and,
together
with
thalamocortical
visual
system,
it
plays
key
role
visually
guided
behaviors.
SC
receives
direct
inputs
from
retinal
ganglion
cells
(RGCs)
but
whether
excitatory
and
differentially
integrate
activity
vivo
still
largely
unknown.
We
recently
established
an
extracellular
recording
approach
using
high-density
electrodes
to
measure
RGCs
simultaneously
their
postsynaptic
targets
,
allows
addressing
how
RGC
activity.
Here,
we
employ
this
method
study
functional
properties
dynamics
govern
retinocollicular
signaling
cell-type
specific
manner
by
identifying
GABAergic
optotagging
anesthetized
VGAT-ChR2
mice.
measured
305
monosynaptically
connected
RGC-SC
pairs,
out
which
approximately
third
afferents
connect
onto
neurons.
show
both
receive
comparable
strong
inputs,
functionally
similar
pairs
showing
stronger
connections.
Our
results
demonstrate
wiring
rules
apply
for
innervation
neurons,
unlike
connectivity
system.
Contrasting
connection
strength,
observed
contributed
more
than
This
implies
are
specifically
coupled
afferent
while
may
additional
other
sources.
Taken
together,
our
deepens
understanding
emphasizes
two
major
areas
processing,
cortex
colliculus,
differently
sensory
inputs.
Language: Английский
Positional information drives distinct traits in transcriptomically identified neuronal types
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Sept. 16, 2024
Summary
Neuronal
phenotypic
traits
such
as
morphology,
connectivity,
and
function
are
dictated,
to
a
large
extent,
by
specific
combination
of
differentially
expressed
genes.
Clusters
neurons
in
transcriptomic
space
correspond
distinct
cell
types
some
cases
(e.
g.,
C.
elegans
1
retinal
ganglion
cells
2–4
)
have
been
shown
share
morphology
function.
The
zebrafish
optic
tectum
is
composed
spatial
array
that
transforms
visual
inputs
into
motor
outputs.
While
the
visuotopic
map
continuous,
subregions
functionally
specialized
5,6
.
To
uncover
cell-type
architecture
tectum,
we
transcriptionally
profiled
its
neurons,
revealing
more
than
60
organized
anatomical
layers.
We
then
measured
responses
thousands
tectal
two-photon
calcium
imaging
matched
them
with
their
transcriptional
profile.
Furthermore,
characterized
morphologies
identified
using
transgenic
lines.
Surprisingly,
found
similar
can
diverge
morphologically.
Incorporating
coordinates
within
volume
revealed
morphologically
defined
subclusters
individual
clusters.
Our
findings
demonstrate
extrinsic,
position-dependent
factors
expand
repertoire
genetically
neurons.
Language: Английский
Retinal input integration in excitatory and inhibitory neurons in the mouse superior colliculus in vivo
Published: Aug. 14, 2023
The
superior
colliculus
(SC)
is
a
midbrain
structure
that
contains
one
of
the
highest
densities
inhibitory
neurons
in
brain
and,
together
with
thalamocortical
visual
system,
it
plays
key
role
visually
guided
behaviors.
SC
receives
direct
inputs
from
retinal
ganglion
cells
(RGCs)
but
whether
excitatory
and
differentially
integrate
activity
vivo
still
largely
unknown.
We
recently
established
an
extracellular
recording
approach
using
high-density
electrodes
to
measure
RGCs
simultaneously
their
postsynaptic
targets
,
allows
addressing
how
RGC
activity.
Here,
we
employ
this
method
study
functional
properties
dynamics
govern
retinocollicular
signaling
cell-type
specific
manner
by
identifying
GABAergic
optotagging
anesthetized
VGAT-
ChR2
mice.
measured
305
monosynaptically
connected
RGC-SC
pairs,
out
which
approximately
third
afferents
connect
onto
neurons.
show
both
receive
comparably
strong
inputs,
functionally
similar
pairs
showing
stronger
connections.
Our
results
demonstrate
wiring
rules
apply
for
innervation
neurons,
unlike
connectivity
system.
Contrasting
connection
strength,
observed
contributed
more
than
This
implies
are
specifically
coupled
afferent
while
may
additional
other
sources.
Taken
together,
our
deepens
understanding
emphasizes
two
major
areas
processing,
cortex
colliculus,
differently
sensory
inputs.
Language: Английский