Applying blood-derived epigenetic algorithms to saliva: cross-tissue similarity of DNA-methylation indices of aging, physiology, and cognition
Sepideh Zarandooz,
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Laurel Raffington
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Clinical Epigenetics,
Journal Year:
2025,
Volume and Issue:
17(1)
Published: April 23, 2025
Abstract
Background
Epigenetic
algorithms
of
aging,
health,
and
cognition,
based
on
DNA-methylation
(DNAm)
patterns,
are
prominent
tools
for
measuring
biological
age
have
been
linked
to
age-related
diseases,
cognitive
decline,
mortality.
While
most
these
methylation
profile
scores
(MPSs)
developed
in
blood
tissue,
there
is
growing
interest
using
less
invasive
tissues
like
saliva.
The
aim
the
current
study
probe
cross-tissue
intraclass
correlation
coefficients
(ICCs)
MPSs
applied
saliva
DNAm
from
same
people.
our
primary
focus
that
were
previously
found
be
robustly
correlated
with
social
determinants
including
second-
third-generation
clocks
physiology
we
also
report
ICC
values
first-generation
enable
comparison
across
metrics.
We
pooled
three
publicly
available
datasets
had
both
individuals
(total
n
=
107,
aged
5–74
years),
corrected
cell
composition
within
each
computed
ICCs.
Results
after
correcting
composition,
saliva–blood
ICCs
moderate
indices
aging
cognition.
Specifically,
PCGrimAge
highest
(0.76),
followed
by
PCPhenoAge
(0.72),
a
measure
performance
(Epigenetic-
g
,
0.69),
DunedinPACE
(0.68),
Acceleration
(0.67),
(0.66),
an
MPS
hs-CRP
(0.58),
BMI
(0.54).
These
appear
lower
than
previous
reports
within-tissue
(saliva
range
0.67
0.85,
0.73
0.93).
Cross-tissue
acceleration
measures
poor,
ranging
0.19
0.25.
Conclusions
Our
findings
suggest
applying
related
phenotypes
results
similarity
precise
correspondence
differs
measure.
degree
several
may
suffice
some
research
settings,
it
not
suitable
clinical
or
commercial
applications.
Collection
samples
necessary
validate
existing
customize
DNAm.
Language: Английский
Genetic and environmental contributions to epigenetic aging across adolescence and young adulthood
Clinical Epigenetics,
Journal Year:
2025,
Volume and Issue:
17(1)
Published: May 7, 2025
Language: Английский
Social determinants of health and epigenetic clocks: Meta-analysis of 140 studies
Yayouk E. Willems,
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A. D. Rezaki,
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M. Aikins
No information about this author
et al.
medRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: May 8, 2025
Social
determinants
of
health
are
social
factors
that
affect
and
survival.
Two
the
most
powerful
socioeconomic
status
(SES)
race/ethnicity;
people
with
lower
SES
or
marginalized
race/ethnicity
tend
to
experience
earlier
onset
aging-related
diseases
have
shorter
lifespans.
DNA
methylation
(DNAm)
measures
biological
aging,
often
referred
as
"epigenetic
clocks",
increasingly
used
study
determination
health.
However,
there
several
generations
epigenetic
clocks
it
remains
unclear
which
sensitive
affecting
Moreover,
is
uncertainty
about
how
technical
factors,
such
tissue
from
derived
technology
measure
may
associations
clocks.
We
conducted
a
pre-registered
multi-level
meta-analysis
140
studies,
including
N
=
65,919
participants,
encompassing
1,065
effect
sizes
for
racial/ethnic
identity
three
found
were
weakest
first
generation
developed
predict
age
differences
between
people.
Associations
stronger
second
mortality
risks.
The
strongest
observed
third
clocks,
sometimes
speedometers",
pace
aging.
In
studies
children,
only
speedometers
showed
significant
SES.
Effects
sex
minimal
was
no
evidence
publication
bias.
Language: Английский
Lagged effects of childhood depressive symptoms on adult epigenetic aging
Psychological Medicine,
Journal Year:
2024,
Volume and Issue:
54(12), P. 3398 - 3406
Published: Sept. 1, 2024
Abstract
Background
Cross-sectional
studies
have
identified
health
risks
associated
with
epigenetic
aging.
However,
it
is
unclear
whether
these
make
clocks
‘tick
faster’
(i.e.
accelerate
biological
aging).
The
current
study
examines
concurrent
and
lagged
within-person
changes
of
a
variety
Methods
Individuals
from
the
Great
Smoky
Mountains
Study
were
followed
age
9
to
35
years.
DNA
methylation
profiles
assessed
blood,
at
multiple
timepoints
waves)
for
each
individual.
Health
psychiatric,
lifestyle,
adversity
factors.
Concurrent
(
N
=
539
individuals;
1029
assessments)
380
760
analyses
used
determine
link
between
Results
models
showed
that
BMI
r
0.15,
P
FDR
<
0.01)
was
significantly
correlated
aging
subject-level
but
not
wave-level.
Lagged
demonstrated
depressive
symptoms
b
1.67
months
per
symptom,
0.02)
in
adolescence
accelerated
adulthood,
also
when
fully
adjusted
BMI,
smoking,
cannabis
alcohol
use.
Conclusions
Within-persons,
unaccompanied
by
aging,
suggesting
unlikely
immediately
‘accelerate’
time
indicated
childhood/adolescence
predicted
adulthood.
Together,
findings
suggest
age-related
embedding
instant
provides
prognostic
opportunities.
Repeated
measurements
longer
follow-up
times
are
needed
examine
stable
dynamic
contributions
childhood
experiences
across
lifespan.
Language: Английский
Age-Associated Genetic and Environmental Contributions to Epigenetic Aging Across Adolescence and Emerging Adulthood
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: June 12, 2024
Background
Epigenetic
aging
estimators
commonly
track
chronological
and
biological
aging,
quantifying
its
accumulation
(i.e.,
epigenetic
age
acceleration)
or
speed
pace).
Their
scores
reflect
a
combination
of
inherent
programming
the
impact
environmental
factors,
which
are
suggested
to
vary
at
different
life
stages.
The
transition
from
adolescence
adulthood
is
an
important
period
in
this
regard,
marked
by
increasing
and,
then,
stabilizing
variance.
Whether
pattern
arises
influences
genetic
factors
still
uncertain.
This
study
delves
into
understanding
contributions
variance
across
these
developmental
Using
twin
modeling,
we
analyzed
four
namely
Horvath
Acceleration,
PedBE
GrimAge
DunedinPACE,
based
on
saliva
samples
collected
two
timepoints
approximately
2.5
years
apart
976
twins
birth
cohorts
(aged
about
9.5,
15.5,
21.5,
27.5
first
12,
18,
24,
30
second
measurement
occasion).
Results
Half
two-thirds
(50-68%)
differences
were
due
unique
indicating
role
experiences
drift,
besides
error.
remaining
was
explained
(Horvath
Acceleration:
24%;
32%;
DunedinPACE:
47%)
shared
26%;
47%).
represented
primary
sources
stable
corresponding
over
years.
Age
moderation
analyses
revealed
that
individually-unique
smaller
younger
than
older
trained
47%
49%;
33%
68%).
contributions,
turn,
potentially
increased
groups
for
adult
18%
39%;
24%
43%;
42%
57%).
Conclusions
Transition
aging.
Both
contribute
trend.
degree
can
be
partially
design
estimators.
Language: Английский