Starting a synthetic biological intelligence lab from scratch
Md Sayed Tanveer,
No information about this author
Dhruvik Patel,
No information about this author
H. Schweiger
No information about this author
et al.
Patterns,
Journal Year:
2025,
Volume and Issue:
unknown, P. 101232 - 101232
Published: April 1, 2025
Language: Английский
Engineered biological neuronal networks as basic logic operators
Joël Küchler,
No information about this author
Katarina Vulić,
No information about this author
Haotian Yao
No information about this author
et al.
Frontiers in Computational Neuroscience,
Journal Year:
2025,
Volume and Issue:
19
Published: April 28, 2025
We
present
an
in
vitro
neuronal
network
with
controlled
topology
capable
of
performing
basic
Boolean
computations,
such
as
NAND
and
OR.
Neurons
cultured
within
polydimethylsiloxane
(PDMS)
microstructures
on
high-density
microelectrode
arrays
(HD-MEAs)
enable
precise
interaction
through
extracellular
voltage
stimulation
spiking
activity
recording.
The
architecture
our
system
allows
for
creating
non-linear
functions
two
inputs
one
output.
Additionally,
we
analyze
various
encoding
schemes,
comparing
the
limitations
rate
coding
potential
advantages
spike-timing-based
strategies.
This
work
contributes
to
advancement
hybrid
intelligence
biocomputing
by
offering
insights
into
neural
information
decoding
create
fully
biological
computational
systems.
Language: Английский
Multiscale Cloud-based Pipeline for Neuronal Electrophysiology Analysis and Visualization
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Nov. 14, 2024
ABSTRACT
Electrophysiology
offers
a
high-resolution
method
for
real-time
measurement
of
neural
activity.
The
vast
amount
data
generated
requires
efficient
storage
and
sophisticated
processing
to
extract
function
network
dynamics.
However,
analysis
is
often
challenging
due
the
need
multiple
software
tools
with
different
runtime
dependencies.
Longitudinal
recordings
from
high-density
microelectrode
arrays
(HD-MEAs)
can
be
considerable
size
local
storage,
complicating
management,
sharing,
backup.
To
address
these
challenges,
we
developed
an
open-source
cloud-based
pipeline
store,
analyze,
visualize
neuronal
electrophysiology
HD-MEAs.
This
dependency
agnostic
by
utilizing
cloud
computing
resources,
Internet
Things
messaging
protocol.
We
containerized
algorithms
serve
as
scalable
flexible
building
blocks
within
pipeline.
designed
graphical
user
interfaces
command
line
remove
requirement
programming
skills.
interactive
visualizations
provide
multi-modality
information
on
various
features.
solution
processing,
limitations
tools,
constraints.
It
simplifies
process
facilitates
understanding
In
this
paper,
applied
two
types
cultures,
cortical
organoids
ex
vivo
brain
slice
recordings.
Language: Английский
Goal-Directed Learning in Cortical Organoids
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 12, 2024
Abstract
Experimental
neuroscience
techniques
are
advancing
rapidly,
with
major
recent
developments
in
high-density
electrophysiology
and
targeted
electrical
stimulation.
In
combination
these
techniques,
cortical
organoids
derived
from
pluripotent
stem
cells
show
great
promise
as
vitro
models
of
brain
development
function.
Although
sensory
input
is
vital
to
neurodevelopment
vivo
,
few
studies
have
explored
the
effect
meaningful
neural
cultures
over
time.
this
work,
we
demonstrate
first
example
goal-directed
learning
organoids.
We
developed
a
closed-loop
framework
embody
mouse
into
simulated
dynamical
task
(the
inverted
pendulum
problem
known
‘Cartpole’)
evaluate
through
high-frequency
training
signals.
Longitudinal
experiments
enabled
by
illuminate
how
different
methods
selecting
signals
enable
improvement
on
tasks.
found
that
for
most
organoids,
chosen
artificial
reinforcement
yield
better
performance
than
randomly
or
absence
signal.
This
systematic
approach
studying
mechanisms
opens
new
possibilities
therapeutic
interventions
biological
computation.
Language: Английский
Optimizing Stereolithography Printing Parameters for Enhanced Microfluidic Chip Quality
Smart and Sustainable Manufacturing Systems,
Journal Year:
2024,
Volume and Issue:
8(1), P. 136 - 149
Published: Dec. 30, 2024
ABSTRACT
In
the
pursuit
of
innovative
biosensing
technologies
for
critical
applications
such
as
early
breast
cancer
detection,
development
efficient
and
portable
devices
is
crucial.
This
work
describes
a
unique
stereolithography
(SLA)-based
three-dimensional–printed
microfluidic
device
intended
particularly
optofluidic
with
just
microliter
quantities
blood,
similar
to
diabetes
monitoring
devices.
Unlike
typical
cumbersome
lab
equipment
Biacore
machine,
which
needs
large
blood
sample
volumes
laboratory
processing,
technology
allows
patient-operated,
at-home
testing,
decreasing
requirement
hospital
visits.
The
main
contribution
this
study
optimize
SLA
printing
parameters,
namely
exposure
duration,
in
order
improve
chip’s
transparency
channel
quality.
improvement
exact
immobilization
biorecognition
components
within
channels,
resulting
sensitive
biomarker
detection.
By
extending
we
considerably
increase
structural
integrity
optical
clarity
are
successful
biosignal
transduction
labeled
sensing
applications.
not
only
leads
cheaper
cost
faster
manufacturing
compared
conventional
but
also
offers
increased
performance
real
bio-sensing
Thus,
our
represents
big
step
forward
accessible,
efficient,
compact
early-stage
illness
diagnosis,
outperforming
existing
lab-based
diagnostics.
Language: Английский