NetworkCommons: bridging data, knowledge and methods to build and evaluate context-specific biological networks DOI Creative Commons
Víctor Patón, Dénes Türei, Olga Ivanova

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 25, 2024

Abstract Summary We present NetworkCommons, a platform for integrating prior knowledge, omics data, and network inference methods, facilitating their usage evaluation. NetworkCommons aims to be an infrastructure the biology community that supports development of better methods benchmarks, by enhancing interoperability integration. Availability Implementation is implemented in Python offers programmatic access multiple datasets, benchmarking setups. It free software, available at https://github.com/saezlab/networkcommons . Contact [email protected] , [email protected] Supplementary Data Contribution guidelines, additional figures, descriptions evaluation strategies implementation are documentation https://networkcommons.readthedocs.io/

Language: Английский

NetworkCommons: bridging data, knowledge and methods to build and evaluate context-specific biological networks DOI Creative Commons
Víctor Patón, Dénes Türei, Olga Ivanova

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 25, 2024

Abstract Summary We present NetworkCommons, a platform for integrating prior knowledge, omics data, and network inference methods, facilitating their usage evaluation. NetworkCommons aims to be an infrastructure the biology community that supports development of better methods benchmarks, by enhancing interoperability integration. Availability Implementation is implemented in Python offers programmatic access multiple datasets, benchmarking setups. It free software, available at https://github.com/saezlab/networkcommons . Contact [email protected] , [email protected] Supplementary Data Contribution guidelines, additional figures, descriptions evaluation strategies implementation are documentation https://networkcommons.readthedocs.io/

Language: Английский

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