Nature Communications,
Journal Year:
2024,
Volume and Issue:
15(1)
Published: Dec. 27, 2024
Although
epigenetic
modification
has
long
been
recognized
as
a
vital
force
influencing
gene
regulation
in
plants,
the
dynamics
of
chromatin
structure
implicated
intertwined
transcriptional
duplicated
genes
polyploids
have
yet
to
be
understood.
Here,
we
document
dynamic
organization
two
subgenomes
allotetraploid
cotton
(Gossypium
hirsutum)
by
generating
3D
genomic,
epigenomic
and
transcriptomic
datasets
from
12
major
tissues/developmental
stages
covering
life
cycle.
We
systematically
identify
subset
that
are
closely
associated
with
specific
tissue
functions.
Interestingly,
these
exhibit
not
only
higher
specificity
but
also
more
pronounced
homoeologous
bias.
comprehensively
elucidate
intricate
process
subgenomic
collaboration
divergence
across
various
tissues.
A
comparison
among
tissues
reveals
widespread
differences
reorganization
genome
structures,
Dt
subgenome
exhibiting
extent
status
than
At
subgenome.
Moreover,
construct
comprehensive
atlas
putative
functional
elements
discover
37
cis-regulatory
(CREs)
selection
signals
acquired
during
domestication
improvement.
These
data
analyses
publicly
available
research
community
through
web
portal.
In
summary,
this
study
provides
abundant
resources
depicts
regulatory
architecture
genome,
which
thereby
facilitates
understanding
biological
processes
guides
breeding.
This
describes
cotton,
an
focus
on
genomic
at
throughout
International Journal of Molecular Sciences,
Journal Year:
2022,
Volume and Issue:
23(7), P. 3542 - 3542
Published: March 24, 2022
DNA
replication
during
cell
proliferation
is
‘vertical’
copying,
which
reproduces
an
initial
amount
of
genetic
information.
Polyploidy,
results
from
whole-genome
duplication,
a
fundamental
complement
to
vertical
copying.
Both
organismal
and
polyploidy
can
emerge
via
premature
cycle
exit
or
cell-cell
fusion,
the
latter
giving
rise
polyploid
hybrid
organisms
epigenetic
hybrids
somatic
cells.
Polyploidy-related
increase
in
biological
plasticity,
adaptation,
stress
resistance
manifests
evolution,
development,
regeneration,
aging,
oncogenesis,
cardiovascular
diseases.
Despite
prevalence
nature
importance
for
medicine,
agri-
aquaculture,
processes
mechanisms
underlying
these
features
largely
remain
unknown.
The
evolutionarily
conserved
include
activation
transcription,
response
stress,
damage
hypoxia,
induction
programs
morphogenesis,
unicellularity,
longevity,
suggesting
that
common
confer
adaptive
viability,
cells
organisms.
By
increasing
polyploidization
provide
survival
under
stressful
conditions
where
diploid
cannot
survive.
However,
it
occurs
at
expense
specific
function,
thus
promoting
developmental
programming
adult
diseases
risk
cancer.
Notably,
genes
arising
evolutionary
are
heavily
involved
cancer
other
Ploidy-related
changes
gene
expression
presumably
originate
chromatin
modifications
derepression
bivalent
genes.
provided
evidence
elucidates
role
carcinogenesis,
may
contribute
development
new
strategies
regeneration
preventing
Kidney International,
Journal Year:
2024,
Volume and Issue:
105(4), P. 709 - 716
Published: Jan. 9, 2024
Tubular
epithelial
cells
(TC)
compose
the
majority
of
kidney
parenchyma
and
play
fundamental
roles
in
maintaining
homeostasis.
Like
other
tissues,
mostly
immature
TC
with
progenitor
capabilities
are
able
to
replace
lost
during
injury
via
clonal
expansion
differentiation.
In
contrast,
differentiated
lack
this
capacity.
However,
as
is
frequently
exposed
toxic
injuries,
evolution
positively
selected
a
response
program
that
endows
maintain
residual
function
injury.
Recently,
we
others
have
described
polyploidization
TC,
mechanism
augment
remnant
after
an
by
rapid
hypertrophy.
Polyploidy
condition
characterized
more
than
two
complete
sets
chromosomes.
Polyploid
often
display
increased
functional
capacity
generally
resilient
stress
evidenced
being
conserved
across
many
plants
eukaryote
species
from
flies
mammals.
Here,
discuss
occurrence
polyploidy
different
contexts
conditions
how
integrates
into
existing
concepts
cell
responses
Collectively,
aim
at
stimulating
acquisition
novel
knowledge
field
well
accelerating
translation
basic
clinical
sphere.
International Journal of Molecular Sciences,
Journal Year:
2022,
Volume and Issue:
23(17), P. 9691 - 9691
Published: Aug. 26, 2022
Polyploid
cells
demonstrate
biological
plasticity
and
stress
adaptation
in
evolution;
development;
pathologies,
including
cardiovascular
diseases,
neurodegeneration,
cancer.
The
nature
of
ploidy-related
advantages
is
still
not
completely
understood.
Here,
we
summarize
the
literature
on
molecular
mechanisms
underlying
adaptive
features.
Polyploidy
can
regulate
gene
expression
via
chromatin
opening,
reawakening
ancient
evolutionary
programs
embryonality.
Chromatin
opening
switches
genes
with
bivalent
domains
that
promote
rapid
induction
response
to
signals
or
morphogenesis.
Therefore,
stress-associated
polyploidy
activate
Myc
proto-oncogenes,
which
further
opening.
Moreover,
proto-oncogenes
trigger
polyploidization
de
novo
accelerate
genome
accumulation
already
polyploid
cells.
As
a
result
these
cooperative
effects,
increase
ability
search
for
states
cellular
through
regulatory
network
rewiring.
This
manifested
epigenetic
associated
traits
stemness,
unicellularity,
flexible
energy
metabolism,
complex
system
DNA
damage
protection,
combining
primitive
error-prone
unicellular
repair
pathways,
advanced
error-free
multicellular
damage-buffering
ability.
These
three
features
be
considered
important
components
increased
adaptability
evidence
presented
here
contribute
understanding
resistance
ploidy
may
useful
development
new
methods
prevention
treatment
oncological
diseases.
Annual Review of Genetics,
Journal Year:
2024,
Volume and Issue:
58(1), P. 297 - 318
Published: Sept. 4, 2024
Polyploidy
is
a
cellular
state
containing
more
than
two
complete
chromosome
sets.
It
has
largely
been
studied
as
discrete
phenomenon
in
either
organismal,
tissue,
or
disease
contexts.
Increasingly,
however,
investigation
of
polyploidy
across
disciplines
coalescing
around
common
principles.
For
example,
the
recent
Across
Tree
Life
meeting
considered
contribution
both
organismal
evolution
over
millions
years
and
tumorigenesis
much
shorter
timescales.
Here,
we
build
on
this
newfound
integration
with
unified
discussion
organisms,
cells,
disease.
We
highlight
how
at
multiple
biological
scales,
thus
eliminating
outdated
mindset
its
specialization.
Additionally,
discuss
rules
that
are
likely
to
all
instances
polyploidy.
With
increasing
appreciation
pervasive
nature
displays
fascinating
commonalities
diverse
contexts,
inquiry
related
important
topic
rapidly
becoming
unified.
Development,
Journal Year:
2023,
Volume and Issue:
150(16)
Published: Aug. 1, 2023
Developmentally
programmed
polyploidy
(whole-genome
duplication)
of
cardiomyocytes
is
common
across
evolution.
Functions
such
are
essentially
unknown.
Here,
in
both
Drosophila
larvae
and
human
organ
donors,
we
reveal
distinct
levels
cardiac
chambers.
In
Drosophila,
differential
growth
cell
cycle
signal
sensitivity
leads
the
heart
chamber
to
reach
a
higher
ploidy/cell
size
relative
aorta
chamber.
Cardiac
ploidy-reduced
animals
exhibit
reduced
size,
stroke
volume
output,
acceleration
circulating
hemocytes.
These
phenotypes
mimic
cardiomyopathies.
Our
results
identify
productive
likely
conserved
roles
for
chambers
suggest
that
precise
ploidy
sculpt
many
developing
tissues.
findings
cardiomyocyte
impact
efforts
block
developmental
improve
injury
recovery.
Advanced Science,
Journal Year:
2024,
Volume and Issue:
11(24)
Published: April 17, 2024
Abstract
Polyploidization
and
depolyploidization
are
critical
processes
in
the
normal
development
tissue
homeostasis
of
diploid
organisms.
Recent
investigations
have
revealed
that
polyaneuploid
cancer
cells
(PACCs)
exploit
this
ploidy
variation
as
a
survival
strategy
against
anticancer
treatment
for
repopulation
tumors.
Unscheduled
polyploidization
chromosomal
instability
PACCs
enhance
malignancy
resistance.
However,
their
inability
to
undergo
mitosis
causes
catastrophic
cellular
death
most
PACCs.
Adaptive
ploid
reversal
mechanisms,
such
multipolar
mitosis,
centrosome
clustering,
meiosis‐like
division,
amitosis,
counteract
lethal
outcome
drive
relapse.
The
purpose
work
is
focus
on
induced
by
cytotoxic
therapy,
highlighting
latest
discoveries
dynamics
physiological
pathological
contexts.
Specifically,
emphasizing
role
“poly‐depolyploidization”
tumor
progression,
aim
identify
novel
therapeutic
targets
or
paradigms
combating
diseases
associated
with
aberrant
ploidies.
PLoS Genetics,
Journal Year:
2024,
Volume and Issue:
20(9), P. e1011387 - e1011387
Published: Sept. 3, 2024
A
programmed
developmental
switch
to
G
/
S
endocycles
results
in
tissue
growth
through
an
increase
cell
size.
Unscheduled,
induced
endocycling
cells
(iECs)
promote
wound
healing
but
also
contribute
cancer.
Much
remains
unknown,
however,
about
how
these
iECs
affect
growth.
Using
the
D
.
melanogaster
wing
disc
as
model,
we
find
that
populations
of
initially
size
then
subsequently
undergo
a
heterogenous
arrest
causes
severe
undergrowth.
acquired
DNA
damage
and
activated
Jun
N-terminal
kinase
(JNK)
pathway,
but,
unlike
other
stressed
cells,
were
apoptosis-resistant
not
eliminated
from
epithelium.
Instead,
entered
JNK-dependent
reversible
senescent-like
arrest.
Senescent
promoted
division
diploid
neighbors,
this
compensatory
proliferation
did
rescue
Our
study
has
uncovered
unique
attributes
their
effects
on
have
important
implications
for
understanding
roles
Scientific Reports,
Journal Year:
2025,
Volume and Issue:
15(1)
Published: Jan. 2, 2025
Diacylglycerol
kinases
(DGKs)
phosphorylate
diacylglycerol
to
generate
phosphatidic
acid,
which
plays
important
roles
in
intracellular
signal
transduction.
DGKα
is
reportedly
associated
with
progression
of
tumors,
including
hepatocellular
carcinomas,
but
its
relationship
liver
regeneration
has
not
been
examined.
The
purpose
this
research
elucidate
the
role
regeneration.
Here,
we
provide
a
detailed
examination
C57BL/6
wild-type
and
knockout
(KO)
mice
subjected
70%
partial
hepatectomy
(70%
PH)
modeling,
survival
rates,
hematological
marker
gene
expression
levels,
histological
analyses
factors
related
Following
PH,
KO
produce
higher
levels
hepatobiliary
enzymes
have
incidence
jaundice
compared
mice,
death
rate
~
40%.
Furthermore,
they
exhibit
impaired
glycogen
lipid
consumption,
low
energy
charge,
hepatocyte
hypertrophy
disorder,
accompanied
by
significantly
reduced
proliferating
cell
nuclear
antigen
cyclin
D.
We
conclude
that
key
molecule
post-PH
process
may
potential
as
therapeutic
target
for
acceleration