Microbiome Dynamics: A Paradigm Shift in Combatting Infectious Diseases

Journal of Personalized Medicine, Journal Year: 2024, Volume and Issue: 14(2), P. 217 - 217

Published: Feb. 18, 2024

Infectious diseases have long posed a significant threat to global health and require constant innovation in treatment approaches. However, recent groundbreaking research has shed light on previously overlooked player the pathogenesis of disease-the human microbiome. This review article addresses intricate relationship between microbiome infectious unravels its role as crucial mediator host-pathogen interactions. We explore remarkable potential harnessing this dynamic ecosystem develop innovative strategies that could revolutionize management diseases. By exploring latest advances emerging trends, aims provide new perspective combating by targeting

Language: Английский

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Are there any completely sterile organs or tissues in the human body? Is there any sacred place?

Microbial Biotechnology, Journal Year: 2024, Volume and Issue: 17(3)

Published: March 1, 2024

Abstract The human microbiome comprises an ample set of organisms that inhabit and interact within the body, contributing both positively negatively to our health. In recent years, several research groups have described presence microorganisms in organs or tissues traditionally considered as ‘sterile’ under healthy pathological conditions. this sense, been detected types cancer, including those organs. But how can be detected? most studies, 16S internal transcribed spacer (ITS) ribosomal DNA (rDNA) sequencing has led identification prokaryotes fungi. However, a major limitation technique is it cannot distinguish between living dead organisms. RNA‐based methods proposed overcome limitation, shorter half‐life RNA would identify only transcriptionally active microorganisms, although perhaps not all viable ones. metaproteomic techniques search for molecular metabolic signatures could interesting alternatives microorganisms. summary, new technological advances are challenging notion body. date, evidence structured these scarce non‐existent. implementation approaches will necessary fully understand importance organs, which pave way development wide range therapeutic strategies.

Language: Английский

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Deciphering the role of female reproductive tract microbiome in reproductive health: a review

Frontiers in Cellular and Infection Microbiology, Journal Year: 2024, Volume and Issue: 14

Published: March 18, 2024

Relevant studies increasingly indicate that female reproductive health is confronted with substantial challenges. Emerging research has revealed the microbiome interacts anatomy, histology, and immunity of tract, which are cornerstone maintaining preventing adverse pregnancy outcomes. Currently, precise mechanisms underlying their interaction impact on physiological functions tract remain elusive, constituting a prominent area investigation within field microecology. From this new perspective, we explore interactions between factors affect composition in as well personalized medicine approaches managing based microbiome. This study highlights pivotal role influencing occurrence diseases. These findings support exploration innovative for prevention, monitoring treatment diseases

Language: Английский

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The Progression of Microbiome Therapeutics for the Management of Gastrointestinal Diseases and Beyond

Gastroenterology, Journal Year: 2024, Volume and Issue: 167(5), P. 885 - 902

Published: May 14, 2024

Language: Английский

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Metagenomic approaches and opportunities in arid soil research

The Science of The Total Environment, Journal Year: 2024, Volume and Issue: 953, P. 176173 - 176173

Published: Sept. 10, 2024

Language: Английский

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How are microbes helping end hunger?

Microbial Biotechnology, Journal Year: 2024, Volume and Issue: 17(3)

Published: March 1, 2024

This article explores the potential of microbiology to positively impact all aspects food supply chain, improving quantity, quality, safety, and nutritional value products by providing innovative ways growing, processing, preserving thus contributing Zero Hunger, one Sustainable Development Goals (SDGs) United Nations. Hunger is a cruel reality that affects millions people around world could worsen in coming years due continuous growth population limitations our planet's resources. Feeding expected exceed 9 billion 2050 extremely complex requires not only an adequate sustainable but also collective effort from different sectors society. collaborative should involve key stakeholders, including politicians inspire social cultural changes scientists provide technological innovations. Social such as promoting education on proper nutrition practices or encouraging healthy lifestyles are important ensuring efficient, secure system. The efficiency system can be improved reducing lost waste, minimizing water use quality. must ensure health humans animals preventing foodborne diseases intoxications through sanitary conditions. Importantly, protect well-being individuals overall planet. current way producing unsustainable because it large amounts energy water, contributes climate change degrades ecosystems. It essential operate without causing further damage planet its biodiversity. achieved, among other actions, greenhouse gas emissions avoiding recalcitrant contaminants land deforestation. In addition growing population, itself poses significant threat challenge discussed. Climate responsible for increase number extreme weather events, temperature precipitation patterns frequency droughts floods. All these events disrupt crop yields, compromise security contribute spread pests diseases. As microbiologists, we delivering solutions challenges, since microorganisms, although historically ignored underestimated, have great many positive contributions. Microorganisms valuable allies help maintain improve ecosystems counteract adverse impacts intensive farming change, is, reduce environmental footprint agriculture. addition, they productivity system, production, distribution consumption, more importantly, security. safety processing Healthy fertile soils foster optimal conditions crops, which fundamental sustainability anthropogenic activities cause levels soil degradation. To address crisis, microbial tools been developed fertility, facilitate decomposition organic matter (Sáez-Sandino et al., 2023), promote nutrient cycling, detoxify pollutants (Jayaramaiah 2022) support resilience importance maintaining influence microorganisms addressing this has discussed Timmis Ramos (2021), who advocate creation proactively prevent loss. directly vegetable levels, would intake requiring increased consumption (Goicoechea & Antolín, 2017). They production stimulating plants, primary producers chain. Plants, beyond their value, raw materials numerous products, animal with capacity plants and, crops known plant growth-promoting (PGPMs). growth, PGPMs produce phytohormones, ethylene, cytokinin, gibberellin, auxin salicylic acid (Nascimento 2021) stimulate physiological processes cell division root development. Other form symbiotic relationships better uptake solubilizing mobilizing nutrients phosphorus nitrogen (Zhao increasing tolerance stress. For example, relationship between mycorrhizal fungi provides limited nutrient, (Shi 2023). Similarly, nitrogen-fixing (NF) bacteria certain (leguminous) roots nitrogen. NF formation new organ root, nodule, where fix atmospheric (N2) assimilated ammonia. fixation process enhances fertility soil, need synthetic fertilizers (Jhu Oldroyd, enhance under challenging associated drought, floods, temperatures (Li osmoprotectants cope scarcity during drought (Fadiji 2022). survive oxygen-deprived oxygen availability waterlogged soils, common consequence flooding (Ali Kim, 2018). mitigate temperature-related stress, inducing heat-shock proteins helping them withstand fluctuations heat waves (Seth Sebastian, 2024). Some high salinity facilitating removal excess salts tissues, problem exacerbated changing general, significantly stressors limitations, conditions, flooding, salinity. These interactions dependence mitigating negative effects crops. Although most beneficial human point view some pathogenic severe economic losses phase. Phytopathogens edible parts production. type III secretion (T3SS) virulence factors extensively studied years. T3SS specialized protein delivery inject effector into cells host plant. effectors manipulate host's cellular processes, enabling pathogen establish infection evade plant's defence mechanisms (Schreiber 2021). Given pivotal role pathogenicity phytopathogens, become major target development inhibitors. inhibitors pathogen's ability effectors, thereby limiting disease protecting damaging phytopathogens (Yuan 2020). On contrary, act natural agents suppressing harmful pathogens, controlling biological control (BCAs) biopesticides alternative chemical pesticides practices. BCAs eliminate variety strategies do so. Certain induce systemic resistance activating pathways preparing respond efficiently subsequent attacks. application ISR-inducing (Pieterse 2014; Salwan limit competing same resources (nutrient competition), importantly iron using siderophores, small, high-affinity chelating compounds. Since require BCA-produced siderophores good strategy incidence (Ahmed Holmström, 2014). involved interbacterial competition, killing inhibiting pathogens. antimicrobial compounds, antibiotics peptides (AMP), secreted environment inhibit pathogens (Roca Matilla, hydrogen cyanide (HCN), secondary metabolite released interferes respiration soilborne death (Barahona 2011). methods offer non-contact approaches environment. contrast, possess contact-dependent molecular machineries toxic rival bacterial eukaryotic cells. best characterized Type VI Secretion System (T6SS) (Allsopp Bernal, 2023) present specifically gram-negative bacteria. T6SS described potent mechanism biocontrol enables kill ecological niches (Bernal 2017, 2021; Durán 2021), holds true T4BSS (Purtschert-Montenegro predatory recognized (Zhang enzymes degrade walls organisms structures capture, penetrate consume prey. particular, Myxobacteria Bdellovibrio like (BALOs) exhibit broad predation spectrum making candidates applications Likewise, viruses infect phytopathogenic used organisms. novel approach minimizes non-target considered promising currently underused mostly regulatory obstacles (Wagemans Many behaviour promotes infections, biofilms allow adhere surfaces first step infection. compounds interfere adhesive properties, difficult infections. Pathogenic coordinate gene expression 'social' factors, biofilm T3SS, at level Quorum Sensing (QS) communication QS Quenching (QQ) (Liu inhibits coordinated factors. signalling molecules volatile (VOCs). spore germination, therefore exploited pest agriculture (Almeida diverse arsenal employed BCAs. Research fields continues uncover insights understanding offering opportunities optimize benefit management ecosystem health. A recent example technologies being field seed biopriming inoculant technique combines effective seed, hydration, metabolism activity bioinoculants (Singh, Vaishnav, fact, shown protection seeds against soil-borne pollutants, heavy metals, while germination rate uniformity, last decade, gained attention environmentally friendly continue grow future. Fungi fruiting bodies mushrooms others alike excellent source direct easily cultivated cooked. years, mycelium, Mycoprotein Quorn (brand), hit market. protein-rich ingredient produced Fusarium venenatum often component vegetarian 'meat' offers meaty texture suitable content (Banks mycelia species Pleurotus ostreatus (oyster mushroom) Ganoderma lucidum (reishi meat alternatives snack mushroom chips jerky. Furthermore, fungal mycelium extracts functional beverages, teas elixirs, benefits. decades, photosynthetic cyanobacterium Spirulina containing amino acids, vitamins antioxidants. hold promise becoming future (García 2017) protein. Moreover, filamentous Nostoc commonly consumed Asian cultures, particularly China, content. cultivation microbes typically less land, compared traditional agriculture, source. However, taste acceptance cultures challenge, efforts ongoing palatability. various especially fermentation, method centuries. Biochemically speaking, metabolic break down simpler ones, by-products taste, texture, bioactive properties foods (Kiczorowski Examples include fermentation milk yoghurt, cheese kefir; cabbage sauerkraut; cereals bread beer grapes wine, vinegar, champagne spirits brandy grappa. plant-based dairy emerged (Harper Conscious manipulation consistency but, flavour extensive list resulting process, presenting here impractical, readers refer fantastic reviews (Tamang Instead, highlight producer interest humans, profound culture. Saccharomyces cerevisiae, baker's yeast, fungus baking brewing. Greek means 'sugar fungus' uses sugars by-product, produces alcohol. Alcohol molecule function except resistant weapon competitors. widely decades involvement revisions available literature (Gänzle, yeasts steps cocoa flavour. Cocoa beans very bitter acidic go correct lose bad obtain quality chocolate. Up 45 yeast genera identified countries Saccharomyces, Pichia, Candida, Hanseniaspora, Torulaspora, Issatchenkia Saccharomycopsis (Schwan spontaneous coffee together part microbiota fruit. formed yeasts, vary depending varieties, fruit maturation, season, altitude, affecting beverage cerevisiae fungi, Penicillium roqueforti, camemberti Geotrichum candidum, centuries nalgiovense salami dry-cure meat, (Ropars Giraud, Interestingly, biotechnology, distant lineages domesticated specific parallel adaptation events. lead phenotypic convergence lipolysis, proteolysis, compound competitive spoilers time, degeneration unused traits toxin alcoholic sake, result rice Aspergillus oryzae. fungus, sojae, soybeans wheat fermented condiment, soy sauce (Luh, 1995). second mould mixture named koji undergoes facilitated Zygosaccharomyces rouxii Candida sp. along lactic 1995), below. well-understood caseins undergo proteolysis peptides, acids carbohydrates transformed acid. developing cheese, kefir yoghurt. LAB acetoin diacetyl characteristic tastes cheeses products. Not candidum alcohols, fatty fruity aroma brie camembert. plays critical distinctive flavours study revealed crucial Streptococcus thermophilus another bacterium, Lactococcus cremoris, palette limits unpleasant (Melkonian kumis (or koumiss), made mare's milk, involves both fermentation. Lactobacillus then lactis Kluyveromyces lactis, turns carbonated mildly drink. (Behera 2017; Tesfaye 2019). several Leuconostoc, Lactobacillus, Weissella ferment vegetables napa Korean radish kimchi. cabbages sauerkraut, cucumbers cucumber pickles olives remove bitterness make palatable. tea kombucha fashionable healthier beverages found supermarkets world. occurs culture (SCOBY) consisting LAB, acetic (AAB) metabolize sugar components. results naturally beverage, sweet sour, antioxidants trace alcohol (Diez-Ozaeta Astiazaran, popular allows preservation increases values instrumental synthesis processes. instance, B foods, yoghurt kombucha, profile benefits consumers (Capozzi 2012). ingredients additives. niger citric acid, industry acidulant sour taste. Corynebacterium glutamicum monosodium glutamate (MSG), additive dishes. colouring, cyanobacteria green blue pigments, phycocyanin, industry. Agrobacterium aurantiacum Paracoccus carotinifaciens astaxanthin, pink/red pigment food's colour. Mucor circinelloides, Neurospora crassa Phycomyces blakesleeanus β-carotene (yellow/orange) pastry, cream, ice cream Pandey, pigments benefits, antioxidant, anticancer anti-inflammatory Directly microbiota, gut microbes. digestion absorption nutrients, vitamin lymphoid gastrointestinal tract protective barrier space (Yi probiotics, digestive play Bacteria Bifidobacterium, strains boulardii Akkermansia shine probiotics concept referred postbiotics, metabolites probiotic received lot attention. multiple advantages over terms stability. stability postbiotics shelf life longer than live handled, transported incorporated supplement refrigeration. Postbiotics exert mechanisms, modulating immune function, integrity intestinal inflammation. Consequently, huge obesity, risk factor morbidity mortality worldwide. lipoteichoic (LTA) Bifidobacterium animalis postbiotic capable obesity biomarkers fat even hyperglycaemic (Balaguer Therefore, LTA therapeutic preventive agent disorders. similar line, medicine Cordyceps (Ophiocordyceps sinensis), Reishi (Ganoderma lucidum) Lion's Mane (Hericium erinaceus), dietary supplements, marketed cognitive enhancement (Łysakowska Indirectly, reducing/avoiding fertilizers. Thus, ensures lower presence chemicals supply, contamination pose industry, contaminate any stage Salmonella Listeria represent serious public concern, illnesses when consumed. undercooked eggs, poultry linked ready-to-eat deli meats, soft smoked fish. Unpasteurized related caused Salmonella, Brucella, causal brucellosis, abortion pregnant women. cases, does toxins microorganisms. Clostridium perfringens, whose spores intestines poultry, secretes enterotoxin (CPE) symptoms C. perfringens poisoning. intoxication exemplified Claviceps purpurea, ergot. infects cereal rye, alkaloid family. Consumption grains contaminated ergot ergotism, hallucinations, convulsions gangrene. embracing agricultural harnessing risks safe avoid spoilage. Substantial wasted stages consumption. Two main causes spoilage, ruin collected product, accumulate Addressing inefficiencies waste maximize previously named; spoilage toxins-producing phases distribution, extending perishable items. preserve perishability mycotoxins (Adebo 2019) inhibitory effect (Guo An interesting (forage) silage grass corn, stored airtight absence bacteria, helps forage months, decay. knowledge about indicates improves digestibility livestock, vehicle substances expand within composting anaerobic convert biogas, (Rastogi Barapatre, Zhang conclusion, indispensable intricate web increasing. manufacturing, way, entire recognizing power global challenges resilient Patricia Bernal conceived idea article, conducted necessary review, wrote manuscript. Figure 1 crafted Canva (canva.com) Freya Saad-designed template titled "Green Blue Playful Illustrative Mind Map". P.B. supported MCIN/AEI/10.13039/501100011033 Spanish agency Ramon y Cajal RYC2019-026551-I her laboratory funded three Grants State Subprogram Knowledge Generation Minister Science Innovation (MCIN); MCIN/AEI/10.13039/501100011033/FEDER, EU – PID2021, MCIN/AEI/10.13039/501100011033/NGEU/PRTR TED2021, MCIN/AEI/10.13039/501100011033/NGEU/PRTR/ CNS202, Agency (AEI) European Union (UE) reference PID2021-123000OB-I00 (MCIN/AEI/10.13039/501100011033/FEDER, UE), TED2021-130357B-I00 CNS2022-135585 (MCIN/AEI/10.13039/501100011033/"NextGenerationEU"/PRTR [The Recovery, Transformation Resilience Plan]). Grant (Excellence Andalusian (AAC), government ProyExcel_00450. author declares there no conflict interest.

Language: Английский

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Crohn's Disease With Latent Tuberculosis Infection or Intestinal Tuberculosis: Rapid Discrimination by Targeted Next‐Generation Sequencing

Alimentary Pharmacology & Therapeutics, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 4, 2025

ABSTRACT Background Discriminating Crohn's disease (CD) with latent tuberculosis infection (LTBI) from intestinal (ITB) in tuberculosis‐endemic regions remains challenging. Aim To assess whether targeted next‐generation sequencing (tNGS) could be an efficient method for ITB diagnosis and discrimination CD LTBI. Methods The study was conducted prospectively September 2020 until December 2023. We recruited patients undetermined ulcers positive interferon‐gamma release assay. compared tNGS (using fresh biopsy tissue samples ulcer bases) to pathological detection of caseous necrotising granuloma, acid‐fast bacillus (AFB) staining, polymerase chain reaction (TB‐PCR) diagnostic efficiency. diagnosed based on cure by anti‐tuberculosis therapy comprehensive clinical evaluation. Results Of the 100 included, 66 had 34 sensitivity, specificity, predictive value negative were 83% (72%–91%), 100% (87%–100%), (92%–100%) 76% (60%–87%), respectively. TNGS significantly higher sensitivity than AFB staining [15% (4%–39%), p < 0.05], TB‐PCR [22% (12%–36%), 0.05] granulomas [17% (9%–28%), 0.05]. models combining multiclinical factors increased (97% vs. 83%) alone. No LTBI tNGS. Conclusions using bases is highly sensitive specific, superiority over other traditional methods detection. facilitate rapid LTBI, particularly high TB‐endemic countries.

Language: Английский

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Atypical pathogen community-acquired pneumonia: an analysis of clinical characteristics, drug treatment, and prognosis in the related patients

Molecular Biology Reports, Journal Year: 2025, Volume and Issue: 52(1)

Published: March 14, 2025

Language: Английский

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Urinary microbiota in patients with kidney stones: a systematic review and meta-analysis

Microbial Pathogenesis, Journal Year: 2025, Volume and Issue: unknown, P. 107641 - 107641

Published: April 1, 2025

Language: Английский

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Lung microbiota: implications and interactions in chronic pulmonary diseases

Frontiers in Cellular and Infection Microbiology, Journal Year: 2024, Volume and Issue: 14

Published: Aug. 19, 2024

The lungs, as vital organs in the human body, continuously engage gas exchange with external environment. lung microbiota, a critical component maintaining internal homeostasis, significantly influences onset and progression of diseases. Beneficial interactions between host its microbial community are essential for preserving host’s health, whereas disease development is often linked to dysbiosis or alterations community. Evidence has demonstrated that changes microbiota contribute major chronic diseases, including obstructive pulmonary (COPD), idiopathic fibrosis (IPF), asthma, cancer. However, in-depth mechanistic studies constrained by small scale susceptibility environmental pollutants other factors, leaving many questions unanswered. This review examines recent research on well methodological advancements studying summarizing ways which impacts diseases introducing methods investigating microbiota.

Language: Английский

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