The Contributions of Sub-Communities to the Assembly Process and Ecological Mechanisms of Bacterial Communities along the Cotton Soil–Root Continuum Niche Gradient DOI Creative Commons

Shaodong Liu,

Ruihua Liu, Siping Zhang

et al.

Microorganisms, Journal Year: 2024, Volume and Issue: 12(5), P. 869 - 869

Published: April 26, 2024

Soil microbes are crucial in shaping the root-associated microbial communities. In this study, we analyzed effect of soil-root niche gradient on diversity, composition, and assembly bacterial community co-occurrence network two cotton varieties. The results revealed that communities compartment niches exhibited a skewed species abundance distribution, dominated by abundant taxa showing strong spatial specificity. processes rhizosphere were mainly driven stochastic processes, enrichment pattern supplemented depletion to recruit bacteria from bulk soil, resulting more stable community. endosphere determined rhizosphere, decrease stability complexity network. shaped diversity communities, variety genotype was an important source within niche. We suggest moderate contribute significantly changes than rare during succession root-soil continuum.

Language: Английский

Long-term returning agricultural residues increases soil microbe-nematode network complexity and ecosystem multifunctionality DOI Creative Commons
Jiangnan Li, Jie Zhao, Xionghui Liao

et al.

Geoderma, Journal Year: 2023, Volume and Issue: 430, P. 116340 - 116340

Published: Jan. 25, 2023

The negative environmental impacts of chemical fertilizers have been recognized for a long time, and the returning agricultural residues to soil is considered sustainable practice. However, few studies focused on ecological economic benefits simultaneously. Using 16-year field experiment, we integrally evaluated compared six fertilization practices. treatments included no-fertilizer control, conventional NPK fertilization, partial substitutions in with low (30%) or high (60%) level (straw cattle manure). amount N, P K inputs remained constant across all treatments, but source differed. Ecological were assessed through study ecosystem multifunctionality co-occurrence network analysis micro-food web. Our results showed that applications increased microbial biomass diversity, complexity, alone. high-level straw substitution treatment supported greatest complexity. Random Forest regression revealed fungal diversity important biological traits associated multifunctionality. benefit was highest when manure returned soil, lowest crop intermediate Therefore, return provided comprehensive services. findings increase understanding relationships between effects soil.

Language: Английский

Citations

41

Effects of microbial agent and microbial fertilizer input on soil microbial community structure and diversity in a peanut continuous cropping system DOI Creative Commons
Taswar Ahsan,

Pei‐Cong Tian,

Jie Gao

et al.

Journal of Advanced Research, Journal Year: 2023, Volume and Issue: 64, P. 1 - 13

Published: Nov. 28, 2023

The soil harbors a diverse array of microorganisms, and these are essential components terrestrial ecosystems. presence microorganisms in the soil, particularly rhizosphere, is closely linked to plant growth fertility.

Language: Английский

Citations

32

Seed biopriming for sustainable agriculture and ecosystem restoration DOI Creative Commons
Prachi Singh, Anukool Vaishnav, Hongwei Liu

et al.

Microbial Biotechnology, Journal Year: 2023, Volume and Issue: 16(12), P. 2212 - 2222

Published: July 25, 2023

Abstract The utilization of microbial inoculants in the realm sustainable agricultural and ecosystem restoration has witnessed a surge recent decades. This rise is largely attributed to advancements our understanding plant–microbe interactions, urgency reduce dependence on agrochemicals growing societal demand for strategies management. However, despite rapid growth bio‐inoculants sector, certain limitations persist concerning their efficacy performance under field condition. Here, we propose that seed biopriming, an effective inoculant technique integrating both biological agents (the priming beneficial microbes seeds) physiological aspects (hydration seeds improved metabolically activity), significant potential mitigate these limitations. method increases protection against soil‐borne pathogens soil pollutants, such as salts heavy metals, while promoting germination rate uniformity, leading overall primary productivity health. Furthermore, argue coating can facilitate transgenerational associations microbes, refine plant microbiomes, maintain legacies microflora. review article aims improve biopriming approach potent valuable tool achieving agriculture successful restoration.

Language: Английский

Citations

25

Digging deeper into the impacts of different soil water systems on the date palm root architecture and associated fungal communities DOI Creative Commons
Alexandre Robin‐Soriano, Bryan Vincent, Kenji Maurice

et al.

Symbiosis, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 4, 2025

Language: Английский

Citations

1

Effects of continuous cropping on bacterial community diversity and soil metabolites in soybean roots DOI Creative Commons

Liwei An,

Xiaokang Lu,

Pengyu Zhang

et al.

Frontiers in Microbiology, Journal Year: 2025, Volume and Issue: 16

Published: Feb. 10, 2025

The alternating planting of corn and soybeans is regarded as an effective strategy in addressing the challenges faced soybean cultivation. However, precise mechanisms that control bacterial microbiome roots soil, particularly continuous cropping rotational corn–soybean farming rotations, are remain unclear. This study employed both field pot positioning experiments, using high-throughput generic metabolomics sequencing techniques to explore dynamics between plants, root microflora, soil metabolites, especially context fluctuating crop rotation. process included rotating significantly enhanced their grain yield, dry weight, nitrogen concentration, urease activity, well accumulation nitrogen, phosphorus, potassium various plant organs, compared traditional practice There a significant reduction transit operational taxonomic units (OTUs) from rhizosphere endosphere through rhizoplane. number OTUs consumed enriched on rhizoplane greater than those absorbed endosphere. Continuous practices boost Burkholderiales, whereas chloroplast microorganisms improve rotation techniques. Soil environmental factors, such accessible crucial establishing relative prevalence Rhodanobacter other groups. benzyl alcohol, show positive correlation with Cyanobacteria, while acidic compounds, D-arabinitol, positively linked Burkholderiales. indicates crops facilitates growth soybeans, increases nutrient plants enhances presence beneficial bacteria, improves yields.

Language: Английский

Citations

1

The mechanism of microbial community succession and microbial co-occurrence network in soil with compost application DOI
Yuxin Wang,

Xie-Yang Liu,

Di HuiHui

et al.

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 906, P. 167409 - 167409

Published: Sept. 26, 2023

Language: Английский

Citations

21

Microbial community assembly of the hyperaccumulator plant Sedum plumbizincicola in two contrasting soil types with three levels of cadmium contamination DOI
Ya Huang, Yongjie Huang,

Jinyu Hou

et al.

The Science of The Total Environment, Journal Year: 2022, Volume and Issue: 863, P. 160917 - 160917

Published: Dec. 16, 2022

Language: Английский

Citations

23

From salty to thriving: plant growth promoting bacteria as nature’s allies in overcoming salinity stress in plants DOI Creative Commons
Mugen Peng, Zhihui Jiang,

Fangzhen Zhou

et al.

Frontiers in Microbiology, Journal Year: 2023, Volume and Issue: 14

Published: June 23, 2023

Soil salinity is one of the main problems that affects global crop yield. Researchers have attempted to alleviate effects salt stress on plant growth using a variety approaches, including genetic modification salt-tolerant plants, screening higher genotypes, and inoculation beneficial microbiome, such as growth-promoting bacteria (PGPB). PGPB mainly exists in rhizosphere soil, tissues surfaces leaves or stems, can promote increase tolerance abiotic stress. Many halophytes recruit salt-resistant microorganisms, therefore endophytic isolated from help enhance responses. Beneficial plant-microbe interactions are widespread nature, microbial communities provide an opportunity understand these interactions. In this study, we brief overview current state microbiomes give particular emphasis its influence factors discuss various mechanisms used by alleviating for plants. Then, also describe relationship between bacterial Type VI secretion system promotion.

Language: Английский

Citations

16

A comparative analysis of soil physicochemical properties and microbial community structure among four shelterbelt species in the northeast China plain DOI Creative Commons
Jiawei Yang,

Dang Ding,

X J Zhang

et al.

Microbiology Spectrum, Journal Year: 2024, Volume and Issue: 12(4)

Published: Feb. 20, 2024

ABSTRACT Conducting studies that focus on the alterations occurring in soil microbiome within protection forests northeast plain is of utmost importance evaluating ecological rehabilitation agricultural lands Mollisols region. Nevertheless, presence geographic factors contributes to substantial disparities microbiomes, and thus, addressing this aspect influence becomes pivotal ensuring credibility collected data. Consequently, objective compare variations physicochemical properties microbial community structure understory diverse shelterbelt species. In study, we analyzed soils Juglans mandshurica (Jm), Fraxinus mandschurica (Fm), Acer mono (Am), Betula platyphylla (Bp) from same locality. We employed high-throughput sequencing technology data investigate impact these different tree species communities, chemical properties, enzyme activities areas. Significant nutrients were observed among species, with organic matter content ranging 49.1 67.7 g/kg cellulase 5.3 524.0 μg/d/g. The diversities was found be more pronounced bacterial (Adnoism: R = 0.605) compared fungal 0.433). linear discriminant analysis effect size (LEfSe) revealed a total 5 3 (Bp), 6 (Am) biomarkers, as well 2 4 1 biomarker at genus level (LDA3). various significantly alter relative abundance specific structures, specifically Gammaproteobacteria, Ascomycota, Basidiomycota. Furthermore, environmental factors, such pH, potassium, available phosphorus important influencing changes communities. propose Fm utilized primary for establishing farmland northeastern region, owing its superior enhancing quality. IMPORTANCE focal point study lies implementation controlled experiment conducted under field conditions. experiment, deliberately selected four shelterbelts field, characterized by identical planting density, year. This deliberate selection effectively mitigated potential extraneous three thereby reliability validity our findings.

Language: Английский

Citations

5

Large scale exploration reveals rare taxa crucially shape microbial assembly in alkaline lake sediments DOI Creative Commons
Zhiguang Qiu,

Shuhang He,

Chun‐Ang Lian

et al.

npj Biofilms and Microbiomes, Journal Year: 2024, Volume and Issue: 10(1)

Published: July 28, 2024

Abstract Alkaline lakes are extreme environments inhabited by diverse microbial extremophiles. However, large-scale distribution patterns, environmental adaptations, community assembly, and evolutionary dynamics of communities remain largely underexplored. This study investigated the characteristics on rare abundant taxa in alkaline lake sediments west northwest China. We observed that varied significantly with geographical distance, while remained unaffected regional differences. The assembly process was influenced dispersal limitation, whilst were predominantly driven heterogeneous selection. Network analysis indicated as core species for interactions stability. Rare exhibited higher speciation transition rate than taxa, serving a genetic reservoir potential candidates to become abundance highlighting their crucial role maintaining diversity. These insights underscore significant influence ecosystem biodiversity stability lakes.

Language: Английский

Citations

4