Biogeography and genetic diversity of freshwater diatoms: The potential of large combined rbcL metabarcoding datasets
The Science of The Total Environment,
Journal Year:
2025,
Volume and Issue:
966, P. 178727 - 178727
Published: Feb. 1, 2025
Language: Английский
What controls planktic foraminiferal calcification?
Biogeosciences,
Journal Year:
2025,
Volume and Issue:
22(3), P. 791 - 807
Published: Feb. 12, 2025
Abstract.
Planktic
foraminifera
are
key
producers
of
pelagic
carbonate,
and
their
shell
weight
is
suggested
to
have
been
influenced
by
the
environment
in
which
they
calcify.
However,
there
debate
about
use
size-normalised
(SNW)
as
a
proxy,
some
authors
invoke
carbonate
system
control
on
calcification
(and
extension
SNW
pCO2
proxy),
while
others
suggest
that
species
optimum
conditions,
nutrient
concentration,
or
temperature
drive
weight.
To
better
understand
this
we
investigate
what
drives
whether
discrepancies
proposed
due
differing
data
collection
methodologies
and/or
regionally
different
drivers.
We
integrate
new
published
with
environmental
hindcast
from
CMIP6
modelling
suite.
Using
Bayesian
regression
modelling,
find
alone
does
not
explain
variability
across
species.
Although
physiology
likely
modulates
response
environment,
little
evidence
unifying
driver
at
ecogroup
level.
Instead,
identify
species-specific
responses
associated
drivers
including
(but
limited
to)
system,
between
ocean
basins.
hypothesise
partly
cryptic
regional
phenotypic
plasticity
changes
well
understood,
such
thickness
calcite
deposited
during
species'
reproductive
phases.
Consequently,
proxy
multiple
should
be
used
parallel
reduce
uncertainty
carefully
considered.
strongly
encourage
testing
calibration
pCO2–SNW
relationships.
Language: Английский
Exploring macroevolutionary links in multi-species planktonic foraminiferal Mg∕Ca and δ18O from 15 Ma to recent
Biogeosciences,
Journal Year:
2025,
Volume and Issue:
22(4), P. 1095 - 1113
Published: Feb. 28, 2025
Abstract.
The
ratio
of
the
trace
element
Mg
over
Ca
(Mg/Ca)
and
oxygen
isotopic
composition
(δ18O)
foraminiferal
calcite
are
widely
employed
for
reconstructing
past
ocean
temperatures,
although
geochemical
signals
also
influenced
by
several
other
factors
that
vary
temporally
spatially.
Here,
we
analyse
a
global
dataset
Mg/Ca
δ18O
data
59
middle
Miocene
to
recent
species
planktonic
foraminifera
from
wide
range
depth
habitats,
many
which
have
never
been
analysed
before
Mg/Ca.
We
investigate
extent
covary
through
time
space
identify
sources
mismatch
between
two
proxies.
Once
adjusted
long-term
non-thermal
factors,
overall
positively
correlated
in
way
consistent
with
temperature
being
dominant
controller
both
across
different
species,
including
deep
dwellers.
However,
systematic
offsets
values,
multispecies
calibrations
should
be
applied
caution.
can
track
appearance
such
ancestor-descendent
last
15
Myr
propose
emergence
these
may
expression
evolutionary
innovations.
find
virtually
all
Mg/Ca-
δ18O-derived
temperatures
commonly
used
genera
Globigerinoides
Trilobatus
within
uncertainty
each
other,
highlighting
utility
paleoceanographic
reconstructions.
Our
results
highlight
potential
leveraging
information
lineages
improve
sea
surface
reconstruction
Cenozoic.
Language: Английский
BFR2: a curated ribosomal reference dataset for benthic foraminifera
Scientific Data,
Journal Year:
2024,
Volume and Issue:
11(1)
Published: Nov. 27, 2024
Abstract
Benthic
foraminifera
are
one
of
the
major
groups
marine
protists
that
also
occur
in
freshwater
and
terrestrial
habitats.
They
widely
used
to
monitor
current
past
environmental
conditions.
Over
last
three
decades,
thousands
DNA
sequences
have
been
obtained
from
benthic
foraminiferal
isolates.
The
results
this
long-term
effort
compiled
here
form
first
curated
ribosomal
reference
dataset
(BFR2).
present
contains
over
5000
a
fragment
18S
rDNA
gene,
which
is
recognized
as
barcode
foraminifera.
represent
279
species
204
genera
belonging
91
families.
Thirteen
percent
these
not
assigned
any
morphologically
described
group
may
new
science.
Furthermore,
forty-five
previously
published.
BFR
2
aims
collect
all
barcodes
provide
much-needed
for
rapidly
developing
field
molecular
studies.
Language: Английский
What controls planktic foraminiferal calcification?
Published: Aug. 5, 2024
Abstract.
Planktic
foraminifera
are
key
producers
of
pelagic
carbonate,
and
their
shell
weight
is
suggested
to
represent
the
environment
in
which
they
calcify.
However,
there
debate
about
use
size-normalised
(SNW)
as
a
proxy,
some
authors
invoke
carbonate
system
control
on
calcification
(and
by
extension
SNW
pCO2
proxy),
while
others
suggest
that
species
optimum
conditions,
nutrient
concentration,
or
temperature
drive
weight.
To
better
understand
its
we
investigate
what
drives
whether
discrepancies
proposed
due
differing
data
collection
methodologies
and/or
regionally
different
drivers.
We
integrate
new
published
with
environmental
hindcast
extracted
from
CMIP6
modelling
suite.
Using
Bayesian
regression
modelling,
find
alone
cannot
explain
variability
across
species.
Although
physiology
likely
modulates
response
environment,
little
evidence
unifying
driver
at
ecogroup-level.
Instead,
identify
species-specific
responses
associated
drivers
including
(but
not
limited
to)
system,
between
ocean
basins.
hypothesise
this
partly
influenced
cryptic
regional
phenotypic
plasticity
well
understood
changes
weight,
such
thickness
calcite
deposited
during
species’
reproductive
phase.
Consequently,
proxy
multiple
should
be
used
parallel
reduce
uncertainty
carefully
considered.
strongly
encourage
testing
calibration
–
relationships.
Language: Английский
Past foraminiferal acclimatization capacity is limited during future warming
Nature,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Nov. 13, 2024
Climate
change
affects
marine
organisms,
causing
migrations,
biomass
reduction
and
extinctions
Language: Английский
Mg/Ca and δ18O in multiple species of planktonic foraminifera from 15 Ma to Recent
Published: June 27, 2024
Abstract.
The
ratio
of
the
trace
element
Mg
over
Ca
(Mg/Ca)
and
oxygen
isotopic
composition
(δ18O)
foraminiferal
calcite
are
widely
employed
for
reconstructing
past
ocean
temperatures,
although
geochemical
signals
also
influenced
by
several
other
factors
that
vary
temporally
spatially.
Here,
we
analyze
a
global
dataset
Mg/Ca
δ18O
data
59
middle
Miocene
to
Holocene
species
planktonic
foraminifera
from
wide
range
depth
habitats,
many
which
have
never
been
analyzed
before
Mg/Ca.
We
investigate
extent
covary
through
time
space,
identify
sources
mismatch
between
two
proxies.
Once
adjusted
long
term
non-thermal
factors,
overall
positively
correlated
in
way
consistent
with
temperature
being
dominant
controller
both
space
across
different
species,
including
deep-dwellers.
However,
systematic
offsets
values,
multispecies
calibrations
should
be
applied
caution.
can
track
appearance
such
ancestor-descendent
last
15
million
years
propose
emergence
these
may
expression
evolutionary
innovations.
find
virtually
all
δ18O-derived
temperatures
commonly
used
genera
Globigerinoides
Trilobatus
within
uncertainty
each
other,
highlighting
utility
paleoceanographic
reconstructions.
Our
results
highlight
potential
leveraging
information
lineages
improve
sea
surface
reconstruction
Cenozoic.
Language: Английский
Comment on egusphere-2024-2405
Brian Huber
No information about this author
Published: Sept. 3, 2024
Planktic
foraminifera
are
key
producers
of
pelagic
carbonate,
and
their
shell
weight
is
suggested
to
represent
the
environment
in
which
they
calcify.
However,
there
debate
about
use
size-normalised
(SNW)
as
a
proxy,
some
authors
invoke
carbonate
system
control
on
calcification
(and
by
extension
SNW
pCO2
proxy),
while
others
suggest
that
species
optimum
conditions,
nutrient
concentration,
or
temperature
drive
weight.
To
better
understand
its
we
investigate
what
drives
whether
discrepancies
proposed
due
differing
data
collection
methodologies
and/or
regionally
different
drivers.
We
integrate
new
published
with
environmental
hindcast
extracted
from
CMIP6
modelling
suite.
Using
Bayesian
regression
modelling,
find
alone
cannot
explain
variability
across
species.
Although
physiology
likely
modulates
response
environment,
little
evidence
unifying
driver
at
ecogroup-level.
Instead,
identify
species-specific
responses
associated
drivers
including
(but
not
limited
to)
system,
between
ocean
basins.
hypothesise
this
partly
influenced
cryptic
regional
phenotypic
plasticity
well
understood
changes
weight,
such
thickness
calcite
deposited
during
species’
reproductive
phase.
Consequently,
proxy
multiple
should
be
used
parallel
reduce
uncertainty
carefully
considered.
strongly
encourage
testing
calibration
–
relationships.
Language: Английский