bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: April 8, 2024
Ocean
acidification
significantly
affects
marine
calcifiers
like
oysters,
warranting
the
study
of
molecular
mechanisms
DNA
methylation
that
contribute
to
adaptive
plasticity
in
response
environmental
change.
However,
a
consensus
has
not
been
reached
on
extent
which
modules
gene
expression,
and
turn
plasticity,
invertebrates.
In
this
study,
we
investigated
impact
pCO
2
expression
eastern
oyster,
Crassostrea
virginica
.
After
30-day
exposure
control
(572
ppm)
or
elevated
(2,827
ppm),
whole
genome
bisulfite
sequencing
(WGBS)
RNA-Seq
data
were
generated
from
adult
female
gonad
tissue
male
sperm
samples.
Although
differentially
methylated
loci
(DML)
identified
females
(89)
males
(2,916),
there
no
expressed
genes,
only
one
transcript
females.
body
impacted
other
forms
activity
sperm,
such
as
maximum
number
transcripts
per
changes
predominant
expressed.
Elevated
increased
variability
(transcriptional
noise)
but
decreased
noise
females,
suggesting
sex-specific
role
regulation.
Functional
annotation
genes
with
transcript-level
containing
DML
revealed
several
enriched
biological
processes
potentially
involved
response,
including
apoptotic
pathways
signal
transduction,
well
reproductive
functions.
Taken
together,
these
results
suggest
may
regulate
maintain
homeostasis
conditions
could
play
key
resilience
Abstract
To
inform
water
quality
monitoring
techniques
and
modeling
at
coastal
research
sites,
this
study
investigated
seasonality
trends
in
lagoons
on
the
eastern
shore
of
Virginia,
USA.
Seasonality
was
quantified
with
harmonic
analysis
low-frequency
time-series,
approximately
30
years
quarterly
sampled
data
thirteen
mainland,
lagoon,
ocean
inlet
along
4–6
high-frequency,
15-min
resolution
sonde
two
mainland
sites.
Temperature,
dissolved
oxygen,
apparent
oxygen
utilization
(AOU)
were
dominated
by
annual
harmonics,
while
salinity
chlorophyll-
a
exhibited
mixed
semi-annual
harmonics.
Mainland
sites
had
larger
seasonal
amplitudes
higher
peak
summer
values
for
temperature,
AOU,
likely
from
longer
residence
times,
shallower
waters,
proximity
to
marshes
uplands.
Based
statistical
subsampling
high-frequency
data,
one
several
decades
(at
sampling)
needed
quantify
climatological
cycle
within
specified
confidence
intervals.
Statistically
significant
decadal
warming
increasing
concentrations
found
sub-set
no
distinct
geographic
patterns
other
trends.
The
highlighted
challenges
detecting
long-term
low
frequency
large
interannual
variability.
Ecosphere,
Journal Year:
2024,
Volume and Issue:
15(8)
Published: Aug. 1, 2024
Abstract
Live
oyster
reefs
are
considered
a
critical
recruitment
habitat
for
estuarine
faunal
populations
as
localized
in
situ
or
mesocosm
studies
have
demonstrated
many
species
prefer
live
habitat.
It
has
therefore
been
assumed
that
the
loss
of
would
precipitate
population
declines,
but
this
largely
untested
at
large
(estuary)
scales.
Here,
we
assessed
how
estuary‐wide
were
affected
by
95%
following
2012
collapse
Apalachicola
Bay,
FL,
which
previously
supported
one
largest
fisheries
United
States.
We
standardized
long‐term
fisheries‐independent
monitoring
seine
and
trawl
data
to
create
relative
indices
resident,
associated,
transient
species'
overall
abundance
recruit
(restrictive
sizes
between
15%
35%
).
expected
both
decrease
collapse,
particularly
among
reside
on
reefs.
However,
analyses
via
series
one‐sided
Bayesian
t
tests
did
not
indicate
significantly
declined
post‐collapse.
As
response
could
be
lagged
also
conducted
change
point
search
declines.
Of
24
time
series,
only
two
had
significant
points
post‐collapse,
black
sea
bass
with
an
associated
end
series.
The
surprising
paucity
decline
may
due
use
alternative
types,
exceptionally
responses,
or,
perhaps
most
compelling,
disconnect
preferred
required
habitats.
Our
failure
detect
consequences
suggests
assumptions
(or
restoration)
effects
fauna
ecosystem
scales
straightforward
extrapolation
sub‐estuary‐scale
result
poor
predictions
future
outcomes.
Journal of Applied Ecology,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Oct. 22, 2024
Abstract
Global
declines
in
marine
shellfish
have
resulted
widespread
efforts
to
restore
populations.
Previous
research
has
predominantly
focused
on
substrate‐limited
rather
than
recruitment‐limited
systems,
yet
given
increased
use
of
aquaculture‐produced
stock
bivalves,
there
is
a
need
understand
differences
the
survival
hatchery‐produced
and
translocated
wild
stock.
We
conducted
systematic
review
synthesis
studies
that
quantified
outplanted
bivalves.
The
identified
893
unique
stocking
events
across
111
for
29
species
10
families.
Most
occurred
temperate
regions
(73%),
four
bivalve
families
(Ostreidae
37%,
Pectinidae
20%,
Veneridae
16%
Mytilidae
11%).
More
stockings
(66%)
(34%).
quantitative
analyses
five
determine
how
origin,
size
at
outplant,
outplant
density,
substrate
co‐deployment,
predator
exclusion
time
since
influences
survival.
Survival
consistently
decreased
through
all
species.
Substrate
origin
did
not
influence
survival,
while
density
affected
some
Synthesis
applications
.
Our
broadly
demonstrate
variability
bivalves
time,
however
predicted
was
poor
after
2
years
(<3%).
Generally
low
highlights
difficulties
associated
with
conducting
scalable
restoration
systems.
Based
our
findings,
using
stock,
mitigating
predation
outplanting
epifaunal
high
densities
may
increase
probabilities
when
restoration.
Further
exploration
needed
whether
results
similar
ecosystem
structure,
function,
service
provisioning
natural
restored
reefs
Marine and Coastal Fisheries,
Journal Year:
2023,
Volume and Issue:
15(5)
Published: Oct. 1, 2023
Abstract
Objective
Depressed
eastern
oyster
Crassostrea
virginica
populations
in
the
northern
Gulf
of
Mexico
have
been
target
numerous
post‐
Deepwater
Horizon
restoration
projects.
These
projects
primarily
focused
on
replacing
cultch
(substrate)
to
promote
spat
settlement,
increase
recruitment,
and
bolster
adult
populations.
This
study
assessed
outcomes
six
such
efforts,
which
used
different
types
densities
between
2015
2022
three
estuaries
Florida
panhandle
(Pensacola,
St.
Andrew,
Apalachicola
bays).
Total
costs
for
these
were
more
than
US$14
million.
Methods
Using
generalized
linear
models,
we
analyzed
count
data
collected
from
diver
surveys
size‐classes
(spat,
seed,
adult).
We
tested
whether
population
responses
efforts
varied
over
time,
location,
or
design.
Result
Oyster
counts
did
not
persistently
after
restoration,
regardless
type
density.
Positive
irregular
short‐lived
seemed
only
occur
spat‐size
oysters
immediately
restoration.
None
significantly
improved
abundance
any
size‐class
estuaries.
Factors
contributing
results
likely
include
design
implementation
elements,
as
materials
height
restored
reefs.
However,
monitoring
programs
able
deliver
a
clear
picture
what
is
hindering
success.
Conclusion
For
succeed,
changes
are
needed—both
their
way
they
monitored—in
order
continuous
learning
improvement
outcomes.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: April 8, 2024
Ocean
acidification
significantly
affects
marine
calcifiers
like
oysters,
warranting
the
study
of
molecular
mechanisms
DNA
methylation
that
contribute
to
adaptive
plasticity
in
response
environmental
change.
However,
a
consensus
has
not
been
reached
on
extent
which
modules
gene
expression,
and
turn
plasticity,
invertebrates.
In
this
study,
we
investigated
impact
pCO
2
expression
eastern
oyster,
Crassostrea
virginica
.
After
30-day
exposure
control
(572
ppm)
or
elevated
(2,827
ppm),
whole
genome
bisulfite
sequencing
(WGBS)
RNA-Seq
data
were
generated
from
adult
female
gonad
tissue
male
sperm
samples.
Although
differentially
methylated
loci
(DML)
identified
females
(89)
males
(2,916),
there
no
expressed
genes,
only
one
transcript
females.
body
impacted
other
forms
activity
sperm,
such
as
maximum
number
transcripts
per
changes
predominant
expressed.
Elevated
increased
variability
(transcriptional
noise)
but
decreased
noise
females,
suggesting
sex-specific
role
regulation.
Functional
annotation
genes
with
transcript-level
containing
DML
revealed
several
enriched
biological
processes
potentially
involved
response,
including
apoptotic
pathways
signal
transduction,
well
reproductive
functions.
Taken
together,
these
results
suggest
may
regulate
maintain
homeostasis
conditions
could
play
key
resilience