Methods in Ecology and Evolution,
Journal Year:
2024,
Volume and Issue:
15(10), P. 1789 - 1795
Published: Sept. 9, 2024
Abstract
In
species
distribution
modelling
(SDM),
it
is
common
practice
to
explore
multiple
machine
learning
(ML)
algorithms
and
combine
their
results
into
ensembles.
R,
many
implementations
of
different
ML
are
available
but,
as
they
were
mostly
developed
independently,
often
use
inconsistent
syntax
data
structures.
For
this
reason,
repeating
an
analysis
with
combining
can
be
challenging.
Specialised
SDM
packages
solve
problem
by
providing
a
simpler,
unified
interface
wrapping
the
original
functions
tackle
each
specific
requirement.
However,
creating
maintaining
such
interfaces
time‐consuming,
approach,
user
cannot
easily
integrate
other
methods
that
may
become
available.
Here,
we
present
tidysdm
,
R
package
solves
taking
advantage
tidymodels
universe.
provide
standardised
grammar,
structures
interfaces,
well‐documented
infrastructure
new
metrics.
The
wide
adoption
means
most
metrics
already
integrated,
add
additional
ones.
Moreover,
because
broad
statistical
approaches
tend
implemented
quickly,
making
them
integrated
existing
pipelines
analyses.
takes
universe
flexible
fully
customisable
pipeline
fit
SDM.
It
includes
SDM‐specific
metrics,
facilitate
spatial
within
.
Additionally,
first
software
natively
allows
performed
using
from
periods,
expanding
availability
for
scholars
working
in
palaeontology,
archaeology,
palaeobiology,
palaeoecology
disciplines
focussing
on
past.
Archaeology
and
the
branch
of
population
genetics
focusing
on
human
past
have
historically
lived
parallel
lives,
often
having
complicated
encounters
when
it
came
to
unravelling
origins
evolution
Homo
sapiens.
These
interactions
were
proven
invaluable
obtain
a
deeper
more
complete
understanding
our
past.
At
same
time,
they
sometimes
uncovered
biases
misinterpretations,
with
serious
consequences
for
data,
methods
and,
most
importantly,
history
species.
Cavalli-Sforza
pioneered
real
multidisciplinary
approach,
bridging
statistics
archaeology,
origins,
other
fields
in
humanities,
inspiring
researchers
from
these
blazing
trail
today’s
successful
collaborations.
His
legacy
showed
that
interdisciplinary
approaches
are
possible
vital
importance,
exposed
areas
still
need
significant
development
today.
PLoS ONE,
Journal Year:
2025,
Volume and Issue:
20(2), P. e0308690 - e0308690
Published: Feb. 26, 2025
After
having
lived
as
the
dominant
human
species
in
Europe
for
over
200
kyr,
Homo
neanderthalensis
(the
Neanderthals)
disappeared
around
40
kyr
BP
(Before
Present)
Higham
T
(2014).
Competition
with
sapiens
,
who
arrived
same
time,
is
often
invoked
to
explain
this
extinction.
Others
have
argued
that
climate
change
may
reduced
living
space
of
population
making
its
disappearance
more
rapid.
In
order
test
hypothesis
we
modelled
Neanderthals’
ecological
niches
between
90
and
50
through
paleoenvironmental
reconstructions
Eco-Cultural
Niche
Modelling.
We
selected
five
environmental
variables
(orographic
height,
mean
annual
precipitation,
temperature
coldest
month,
carrying
capacity
friction,
see
below)
from
model
simulations
5
periods
Europe.
used
Structural
Similarity
(SSIM)
index
compare
probability
maps
suitable
Neanderthals
performed
by
Maxent.
a
strong
initial
first
(P1
=
83
BP)
second
(P2
69
periods,
our
results
show
large
areas
highly
Neanderthal
occupation
persisted
across
As
an
increase/stability
Neanderthals,
question
cause
decrease
or
displacement
towards
southern
after
climatic
remains
open.
Scientific Reports,
Journal Year:
2025,
Volume and Issue:
15(1)
Published: March 10, 2025
The
transition
from
foraging
to
plant
cultivation
represents
the
most
important
shift
in
economic
history
of
early
Holocene
societies.
This
process
unfolded
independently
different
regions
globe,
resulting
varied
assemblages,
strategies,
dietary
practices,
and
landscape
modifications.
To
investigate
drivers
this
transition,
we
employed
a
machine-learning
approach.
Using
Random
Survival
Forest,
analyze
comprehensive
dataset
radiocarbon
dates
linked
first
adoption
domesticated
plants,
coupled
with
environmental
predictors.
Our
findings
indicate
strong
spatial
autocorrelation
timing
agricultural
adoption,
underscoring
role
diffusion
contact
between
regions.
Region-specific
bioclimatic
factors
emerged
as
influential:
Americas,
mean
temperature
seasonality
were
critical,
while
Southwest
Asia
Europe,
seasonal
variation
precipitation
relative
held
greater
importance.
These
results
suggest
that
facilitated
spread
practices
shaped
by
local
conditions,
it
was
not
possible
determine
set
universal
drivers.
Thus,
emergence
food
production
influenced
combination
cultural
transmission,
leaving
specific
determinants
for
each
region's
an
open
question
further
study.
Scientific Reports,
Journal Year:
2025,
Volume and Issue:
15(1)
Published: April 4, 2025
Regionalisation
is
considered
to
be
a
hallmark
of
the
Middle
Stone
Age
(MSA)
compared
Early
Age.
Yet
what
drove
diversification
around
shared
technological
substrate
that
persisted
across
Africa
for
hundreds
thousands
years
remains
debated.
Non-mutually
exclusive
hypotheses
include
region-specific
styles
in
manufacture,
social
signalling,
cultural
drift
between
geographically
isolated
populations,
and
diverse
environmental
adaptations,
as
well
impacts
unequal
research
histories
intensities.
We
explore
potential
ecological
bases
behavioural
diversity
during
MSA
two
well-studied
areas:
eastern
northwestern
Africa.
utilise
set
standardised
bioclimatic
simulations,
time
series
decomposition
algorithm,
determine
nature
extent
regional
differences
terms
productivity,
seasonality
predictability
at
sites
through
time.
Our
results
highlight
that,
human
occupations
Africa,
African
are
associated
with
colder,
drier
less
productive
environments,
albeit
but
wetter
more
surrounding
areas,
higher
temperature
predictable
climates
millennia.
then
theoretically
consider
implications
our
these
regions
Late
Pleistocene,
such
investment
specific
risk
mitigation
strategies
dealing
seasonally
mobile
resources
northern
localities,
toolkits
tropical
Journal of Quaternary Science,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 16, 2025
ABSTRACT
The
semi‐arid
Australian
continental
inland
is
increasingly
subject
to
climatic
extremes
such
as
drought
and
flooding.
Combined
with
the
exceptionally
low
topographic
relief
characteristic
of
this
region,
hydroclimatic
can
have
an
enormous
impact
on
land
surface.
Nevertheless
our
understanding
dryland
hydrologic
connectivity
earth‐surface
response
remains
poorly
understood
largely
unquantified.
Here
we
investigate
past
hydroclimate
Willandra
Lakes
over
last
60
ky,
integrating
sediment‐based
chronologies
for
filling
drying
multiple
basins
water‐flux
modelling
reconstruction
palaeoclimate
parameters.
We
quantify
threshold
inflow
volume
required
fill
lake
system
2
km
3
.
establish
that
prior
25
ka,
permanent
lakes
persisted
protracted
periods
time
in
increased
catchment
precipitation,
consistent
regional
geomorphic
indicators
wetter
conditions.
By
contrast,
Last
Glacial
Maximum
(LGM)
oversaw
rapid
couplets
despite
lower
temperature,
increasing
evaporation.
propose
seasonal
snow
melt
from
highland
headwaters
during
cold
phase,
coupled
effective
runoff
due
reduced
vegetation
cover,
was
responsible
large
quantities
water
entering
at
time.
Frontiers of Biogeography,
Journal Year:
2025,
Volume and Issue:
18
Published: April 23, 2025
The
straight-tusked
elephant
(
Palaeoloxodon
antiquus
)
was
amongst
the
largest
herbivores
once
engineering
European
landscape
on
a
continental
scale.
In
combination
with
glacial-interglacial
cycles
of
Pleistocene,
species
an
integral
part
control
regimes
that
shaped
flora
and
fauna.
With
human-facilitated
extinction
elephant,
these
landscape-forming
processes
were
lost
during
last
Glacial-Interglacial
cycle.
Given
today’s
climate,
could
elephants
still
be
modern
ecosystems
in
Europe?
And
if
yes,
where?
Answers
to
questions
can
support
nature
conservation
preserving
historically
adapted
regimes.
We
reconstructed
realised
niche
by
allocating
novel
compilation
fossil
occurrences
either
cold
or
warm
stages,
based
their
assignment
Marine
Isotope
Stages.
Further,
we
quantified
past
potential
distribution
since
its
current
given
climate.
Results
show
have
persisted
Mediterranean
Basin
until
today
climate
across
Central
Western
Europe,
excluding
Alps,
as
well
Mediterranean,
is
highly
suitable
for
occurrence.
Our
results
that,
without
human-induced
extinctions,
fauna
would
comprise
extinct
megafauna,
acting
ecosystem
engineers
Local
rewilding
initiatives
aim
at
restoring
processes,
but
potentially
cannot
achieve
lasting
ecological
effects
comparable
scales.
).
cycle,
considering
Conserving
top-down
functions
executed
Europe
may
especially
promising
regions
where
exist
today.
Using
reference
Stages
Species
Distribution
Modelling
framework,
attempt
overcome
dating
uncertainties
inhibiting
more
specific
reconstructions
species.
Azania Archaeological Research in Africa,
Journal Year:
2023,
Volume and Issue:
59(1), P. 111 - 139
Published: Nov. 7, 2023
Stone
points
are
one
of
the
key
features
used
to
define
African
Middle
Age
(MSA).
Regional
patterns
in
their
shape
and
size
through
time
have
been
thought
reflect
inter-group
interactions
networks
populations
cultural
phases
within
MSA.
However,
eastern
Africa
does
not
distinctive
widely
applied
chrono-stratigraphic
point
variants
that
divide
its
MSA
record,
which
is
often
described
as
being
highly
variable.
This
paper
presents
a
metric
geometric
morphometric
analysis
evaluates
potential
drivers
variation
them
relation
null
models
isolation
by
distance,
environment.
Approximately
half
variance
our
sample
can
be
explained
spatial,
temporal
environmental
differences,
well
size,
indicating
degree
demographic
continuity
sustained
transmission.
A
portion
remaining
likely
represents
stylistic
differences
between
assemblages,
subject
interest
archaeological
studies.
The
variable
nature
may
region's
refugial
positioning
continent,
with
technology
flexible
adaptive
system
was
dynamically
employed
across
during
depending
on
varying
social
ecological
contexts,
resulting
appearance
both
'generic'
'specific'
tool
forms
at
particular
times
places.
Nature Communications,
Journal Year:
2024,
Volume and Issue:
15(1)
Published: March 28, 2024
Abstract
Biogeographic
history
can
lead
to
variation
in
biodiversity
across
regions,
but
it
remains
unclear
how
the
degree
of
biogeographic
isolation
among
communities
may
differences
biodiversity.
analyses
generally
treat
regions
as
discrete
units,
species
assemblages
differ
much
they
share,
just
evolutionary
share.
Here,
we
use
a
continuous
measure
distance,
phylobetadiversity,
analyze
influence
on
taxonomic
and
functional
diversity
global
mammal
bird
assemblages.
On
average,
is
better
predicted
by
environment
than
isolation,
especially
for
birds.
However,
mammals
deeply
isolated
are
strongly
influenced
isolation;
Australia
Madagascar,
example,
less
diverse
alone
contain
unique
combinations
traits
compared
other
regions.
Neotropical
bat
far
more
functionally
Paleotropical
assemblages,
reflecting
different
trajectories
that
have
developed
over
tens
millions
years.
Our
results
elucidate
long-lasting
barriers
divergent
patterns,
against
backdrop
environmental
determinism
predominantly
structures
most
world.
Abstract.
Both
proxies
and
models
provide
key
resources
to
explore
how
palaeoenvironmental
changes
may
have
impacted
diverse
biotic
communities
cultural
processes.
Whilst
the
gold
standard
in
reconstructing
local
environment,
they
only
point
estimates
for
a
limited
number
of
locations;
on
other
hand,
potential
afford
more
extensive
standardised
geographic
coverage.
A
decision
when
using
model
outputs
is
appropriate
resolution
adopt;
are
coarse
scale,
order
several
arc
degrees,
so
their
usually
downscaled
higher
resolution.
Most
publicly
available
time-series
been
30
or
60
arc-minutes,
but
it
unclear
whether
such
sufficient,
this
homogenise
environments
mask
spatial
variability
that
often
primary
subject
analysis.
Here,
we
impact
further
downscaling
from
5
arc-minutes
delta
method,
which
uses
difference
between
past
present
data
sets
increase
simulations,
determine
what
extent
captures
climatic
trends
at
site-level,
through
direct
comparison
with
proxy
reconstructions.
We
use
output
HadCM3
Global
Circulation
annual
temperature,
mean
temperature
warmest
quarter,
precipitation,
evaluated
against
large
empirical
dataset
pollen-based
reconstructions
across
Northern
Hemisphere.
Our
results
demonstrate
that,
overall,
tend
broadly
similar
accounts
climate
obtained
reconstructions,
coherence
tending
decline
age.
However,
our
imply
very
fine
scale
has
minimal
no
effect
pollen
records.
Optimal
therefore
likely
be
highly
dependent
specific
research
contexts
questions,
careful
consideration
required
regarding
trade-off
highlighting
local-scale
variation
increasing
error.