New insights into infrageneric relationships of Lonicera (Caprifoliaceae) as revealed by nuclear ribosomal DNA cistron data and plastid phylogenomics DOI

Xu‐Long Yang,

Qinghui Sun,

Diego F. Morales‐Briones

et al.

Journal of Systematics and Evolution, Journal Year: 2023, Volume and Issue: 62(3), P. 333 - 357

Published: Oct. 10, 2023

Abstract The discontinuous geographic distribution pattern of plants in the north temperate zone has been a focus biogeographic research, especially concerning mechanisms behind formation such and spatial temporal evolution this intermittent pattern. Hypotheses boreotropical origin, land bridge migration, out‐of‐Tibet have proposed to explain Lonicera shows typical Europe–Asia–North America distribution, which makes for good case study investigate above three hypotheses. In study, we inferred phylogeny based on plastid genomes nuclear data set with broad taxon sampling, covering 83 species representing two subgenera four sections. Both phylogenetic analyses found section Isika polyphyletic, while sections Nintooa , Isoxylosteum Coelxylosteum were monophyletic subgenus Chamaecerasus . Based chloroplast phylogeny, suggest transferring maximowiczii tangutica into Reconstruction ancestral areas suggests that originated Qinghai–Tibetan Plateau (QTP) and/or Asia, subsequently dispersed other regions. aridification Asian interior may facilitated rapid radiation region. At same time, uplifts Tibetan appear triggered spread recent diversification genus QTP adjacent areas. Overall, our results deepen understanding evolutionary history

Language: Английский

Integrated phylogenomic analyses unveil reticulate evolution inParthenocissus(Vitaceae), highlighting speciation dynamics in theHimalayan–HengduanMountains DOI
Jinren Yu, Yan‐Ting Niu, Yichen You

et al.

New Phytologist, Journal Year: 2022, Volume and Issue: 238(2), P. 888 - 903

Published: Oct. 28, 2022

Summary Hybridization caused by frequent environmental changes can lead both to species diversification (speciation) and speciation reversal (despeciation), but the latter has rarely been demonstrated. Parthenocissus , a genus with its trifoliolate lineage in Himalayan–Hengduan Mountains (HHM) region showing perplexing phylogenetic relationships, provides an opportunity for investigating dynamics based on integrated evidence. We investigated discordance reticulate evolution rigorous analyses of plastome transcriptome data. focused reticulations HHM using population‐level genome resequencing dataset, incorporating evidence from morphology, distribution, elevation. Comprehensive confirmed multiple introgressions within robust temporal–spatial framework. Around region, at least three hybridization hot spots were identified, one which showed ongoing reversal. present solid case study integrative methodological approach investigate evolutionary history underlying mechanisms plants. It demonstrates example through hybridizations new perspectives mountainous areas strong topographic heterogeneity.

Language: Английский

Citations

21
There and back again: historical biogeography of neotropical magnolias based on high-throughput sequencing DOI Creative Commons
Salvador Guzmán-Díaz, Fabián Augusto Aldaba Núñez, Emily Veltjen

et al.

BMC Ecology and Evolution, Journal Year: 2025, Volume and Issue: 25(1)

Published: April 29, 2025

Abstract Background The Neotropics are considered one of the most biodiverse areas in world, housing at least third all vascular plant species. One genera that has diversified is Magnolia , with about 174 species three sections ( Macrophylla and Talauma ) endemic to Americas. In this work, we study biogeographic history Neotropical using high-throughput sequencing data. Sequences from 39 (38 sister genus Liriodendron were assembled. dataset contained sequences 239 nuclear targets complete chloroplast genomes. Phylogenomic hypotheses ancestral distribution range reconstructed. Results results calibrated phylogenetic construction suggest earliest arrival ancestors section million years ago), which colonized Pacific region. This early presence South America suggests long-distance, overwater dispersal North America, presumed origin . analysis extant indicate a south north recolonization. other two sections, migrated around 19 mya Asia radiating southward afterwards, 11 mya. Conclusions Our magnolias originated American ancestor. current arrived region independently influenced by climatic processes such as temperature drops or Miocene Climatic Optimum. Additionally, geological processes, movement land masses emergence Panama isthmus, facilitated migration between continents.

Language: Английский

Citations

0
Evolutionary divergence contributes to species richness anomalies among intercontinental disjunct regions of ash species (Fraxinus, Oleaceae) DOI
Enze Li, Kangjia Liu,

Chang Guo

et al.

Journal of Systematics and Evolution, Journal Year: 2025, Volume and Issue: unknown

Published: May 2, 2025

Abstract Species are distributed heterogeneously, and different regions have contrasting numbers of species, producing species richness anomalies. More than 100 angiosperm genera demonstrate disjunct distributions in at least two these regions: Europe, eastern North America, western East Asia, commonly between Asia America. These similar climates but usually exhibit anomalies; however, the underlying causes anomalies intercontinental remain poorly understood. In this study, we investigated drivers ash tree (genus Fraxinus L.) among based on distribution data, macrofossil records, corresponding evolutionary environmental variables. Generalized linear regression pathway model analyses incorporating processes indicated that global cooling has contributed to low whereas divergence, shaped distinct patterns (which was identified as an cradle) America museum). Environmental heterogenies divergence resulted a significant diversity anomaly regions. This study emphasizes important role evolution formation patterns.

Language: Английский

Citations

0
Phylogenomic analyses sheds new light on the phylogeny and diversification of Corydalis DC. in Himalaya–Hengduan Mountains and adjacent regions DOI
Yanyan Liu,

Jia-Liang Cao,

Shenglong Kan

et al.

Molecular Phylogenetics and Evolution, Journal Year: 2024, Volume and Issue: 193, P. 108023 - 108023

Published: Feb. 10, 2024

Language: Английский

Citations

3
Plastid phylogenomics of the tribe potentilleae (Rosaceae) DOI Creative Commons

Qin‐Qin Li,

Khasbagan Khasbagan, Zhiping Zhang

et al.

Molecular Phylogenetics and Evolution, Journal Year: 2023, Volume and Issue: 190, P. 107961 - 107961

Published: Nov. 2, 2023

Language: Английский

Citations

9
Heterogeneous occurrence of evergreen broad-leaved forests in East Asia: Evidence from plant fossils DOI Creative Commons
Jiagang Zhao, Shufeng Li, Jian Huang

et al.

Plant Diversity, Journal Year: 2024, Volume and Issue: unknown

Published: July 1, 2024

Evergreen broad-leaved forests (EBLFs) are widely distributed in East Asia and play a vital role ecosystem stability. The occurrence of these has been subject debate across various disciplines. In this study, we explored the Asian EBLFs from paleobotanical perspective. By collecting plant fossils four regions Asia, have established evolutionary history EBLFs. Through floral similarity analysis paleoclimatic reconstruction, revealed diverse spatio-temporal pattern for Asia. earliest southern China can be traced back to middle Eocene, followed by southwestern during late Eocene-early Oligocene. Subsequently, emerged Japan early Oligocene eventually appeared central-eastern around Miocene. Paleoclimate simulation results suggest that precipitation wettest quarter (PWetQ, mm) exceeding 600 mm is crucial Furthermore, heterogeneous closely associated with evolution Monsoon. This study provides new insights into

Language: Английский

Citations

3
Phylotranscriptomics of liverworts: revisiting the backbone phylogeny and ancestral gene duplications DOI Open Access
Shanshan Dong, Yu Jin, Li Zhang

et al.

Annals of Botany, Journal Year: 2022, Volume and Issue: 130(7), P. 951 - 964

Published: Sept. 8, 2022

With some 7300 extant species, liverworts (Marchantiophyta) represent one of the major land plant lineages. The backbone relationships, such as phylogenetic position Ptilidiales, and occurrence timing whole-genome duplications, are still contentious.Based on analyses newly generated transcriptome data for 38 complemented with those publicly available, we reconstructed evolutionary history inferred gene duplication events along 55 taxon liverwort species tree.Our phylogenomic study provided an ordinal-level nuclear phylogeny identified extensive tree conflicts cyto-nuclear incongruences. Gene based integrated phylogenomics Ks distributions indicated no evidence liverworts.With a broadened sampling transcriptomes, re-evaluated liverworts, ancient hybridizations followed by incomplete lineage sorting that shaped deep liverworts. lack during evolution indicates might few embryophyte lineages whose was not driven duplications.

Language: Английский

Citations

14
Comparative Chloroplast Genomes of Six Magnoliaceae Species Provide New Insights into Intergeneric Relationships and Phylogeny DOI Creative Commons
Lin Yang, Jinhong Tian,

Liu Xu

et al.

Biology, Journal Year: 2022, Volume and Issue: 11(9), P. 1279 - 1279

Published: Aug. 28, 2022

Magnoliaceae plants are industrial tree species with high ornamental and medicinal value. We published six complete chloroplast genomes of by using Illumina sequencing. These showed a typical quadripartite structure angiosperm were 159,901−160,008 bp in size. A total 324 microsatellite loci variable intergenic regions (Pi > 0.01) identified genomes. Compared five other genomes, the contraction expansion IR significantly different Manglietia grandis. To gain more thorough understanding intergeneric relationships Magnoliaceae, we also included 31 close relative for phylogenetic analyses. New insights into provided based on our results previous morphological, phytochemical anatomical information. suggest that genus Yulania should be separated from Michelia its systematic position restored; genera Paramichelia Tsoongiodendron merged Michelia; Pachylarnax Parakmeria combined one genus. findings will provide theoretical basis adjusting at molecular level.

Language: Английский

Citations

10
Phylogenomics and divergence pattern of Polygonatum (Asparagaceae: Polygonateae) in the north temperate region DOI Creative Commons
Y.-H. Qin, Menghua Zhang,

Chu-Yun Yang

et al.

Molecular Phylogenetics and Evolution, Journal Year: 2023, Volume and Issue: 190, P. 107962 - 107962

Published: Nov. 4, 2023

Language: Английский

Citations

6
Chloroplast genomes and ribosomal DNA provide insights into divergence and morphological evolution of alpine Tongoloa DOI

Ling‐Jian Gui,

Deng‐Feng Xie,

Chang Peng

et al.

Journal of Systematics and Evolution, Journal Year: 2023, Volume and Issue: 63(1), P. 72 - 84

Published: Nov. 27, 2023

Abstract Tongoloa is a herbaceous genus of East Asia Clade (Apiaceae) distributed in the alpine regions. The use DNA fragments has not provided well‐resolved evolutionary history. For this research, we primarily collected samples from type localities and closely related taxa Hengduan Mountains. chloroplast (cp) genomes nuclear ribosomal (nr) repeats 27 were assembled using genome skimming sequencing reads. We analyzed characteristics cp genome, found remarkable expansion Inverted Repeats. Three genes ( ndhC , ndhJ petG ) to photosynthesis appear have undergone significant selective pressure. Through high‐resolution phylogenetic analysis, cpDNA compelling evidence supporting inclusion Sinolimprichtia as an early taxon within . However, nrDNA suggested that belong distinct branches. Morphological analysis showed broadly oval fruits with cordate base, whereas are long‐obovate obtuse base. specific fruit morphology was be nested tree. Ancient introgression capture provide most plausible explanation for conflict between phylogenies. Our study highlights potential impact complex history on challenges encountered previous taxonomic treatments.

Language: Английский

Citations

5