Identification of candidate genes associated with body weight in swimming crab (Portunus trituberculatus) according to conjunctive analyses of BSA-seq and RNA-seq DOI Creative Commons
Baohua Duan,

Tongxu Kang,

Chen Zhang

et al.

Aquaculture Reports, Journal Year: 2023, Volume and Issue: 32, P. 101732 - 101732

Published: Sept. 12, 2023

The swimming crab (Portunus trituberculatus) is a valuable crustacean species extensively cultivated in China, owing to its fast development, palatability, and rich nutrition. However, the genetic factors regulating growth remain elusive, impeding progress of breeding initiatives for this economically important species. In study, we combined bulk segregation analysis sequencing (BSA-seq) transcriptome (RNA-seq) identify potential candidate genes related body weight P. trituberculatus using full-sib family. BSA-seq successfully identified five intervals on chromosomes 31, 38, 47, spanning total length 9.76 Mb, which encompassed 137 annotated genes. By conducting RNA-seq individuals two extreme groups, 1581 were mined as differentially expressed (DEGs), involving 357 up-regulated 1224 down-regulated GO enrichment demonstrated that DEGs significantly enriched proteolysis, obsolete oxidation-reduction process, nucleus, cytoplasm, molecular function, metal ion binding. KEGG showed proteasome signaling pathway could play prominent role difference trituberculatus. conjunctive analyses led identification eight critical DEGs, including peripheral plasma membrane protein CASK (CASK), cytoplasmic dynein 2 heavy chain 1 (Dyh1b), RNA-binding 5 (Rbm5), structural maintenance 3 (Smc3), hemicentin-2 (Hmcn1), A-kinase anchor 13 (Akap13), zinc finger MYM-type (Zmym3), extracellular matrix FRAS1 (Fras1), exert influence over This study not only enhances our understanding mechanism governing but also provides insights future aquaculture programs aimed at selective

Language: Английский

Identification of a Novel QTL on LG16 Associated with Acute Salt Tolerance in Red Tilapia (Oreochromis spp.) Using GWAS DOI

Tong De Liu,

Dan Dan Huang, Linda Chang

et al.

Marine Biotechnology, Journal Year: 2025, Volume and Issue: 27(1)

Published: Feb. 1, 2025

Language: Английский

Citations

1

Genome-wide association studies in a F1 tilapia population reveal novel genetic loci associated with salinity tolerance DOI
Dan Dan Huang, Qin Hui,

Zong Xian Zhu

et al.

Aquaculture, Journal Year: 2024, Volume and Issue: 588, P. 740913 - 740913

Published: April 2, 2024

Language: Английский

Citations

7

Growth performance, antioxidative status, and immune response of Nile tilapia (Oreochromis niloticus) fed dietary fermented Spirulina platensis DOI Creative Commons

Esraa M. Sherif,

Ibrahim M. Abd El-Razek,

Mohamed E. El‐Sharawy

et al.

Aquaculture Reports, Journal Year: 2024, Volume and Issue: 39, P. 102324 - 102324

Published: Sept. 18, 2024

Language: Английский

Citations

4

Biofortification of Crops and Vegetables to Achieve Food Nutritional Security DOI
Fahad Shafiq, Sumera Anwar, Muhammad Umer Farooq Awan

et al.

Published: Feb. 27, 2025

Language: Английский

Citations

0

Mapping the genetic basis for sex determination and growth in hybrid tilapia (Oreochromis mossambicus × O. niloticus) DOI
Le Wang, Fei Sun, Zituo Yang

et al.

Aquaculture, Journal Year: 2024, Volume and Issue: 593, P. 741310 - 741310

Published: June 30, 2024

Language: Английский

Citations

3

Salt tolerance candidate genes identified by QTL mapping, RNA-seq, and functional analysis in tilapia DOI
Zituo Yang, Le Wang, Fei Sun

et al.

Aquaculture, Journal Year: 2024, Volume and Issue: unknown, P. 741762 - 741762

Published: Oct. 1, 2024

Language: Английский

Citations

3

Salinity-dependent effects of integrated biofloc technology on reproductive performance, biological responses, and offspring quality in red tilapia aquaculture DOI Creative Commons

Ghada R. Sallam,

Mohammed F. El Basuini,

Amal F. Fahmy

et al.

Aquaculture International, Journal Year: 2025, Volume and Issue: 33(2)

Published: Jan. 10, 2025

Abstract The study aims to evaluate the reproductive performance, serum biochemical indices, growth, antioxidant capacity, and immune response of Florida Red Tilapia ( Oreochromis sp.) progeny reared at different salinity levels within biofloc technology (BFT) systems, focusing on egg production, fertilization rates, tolerance oxidative stress, offspring performance. Broodstock in systems (BF) were compared those clear water (Without biofloc, WBF) across three (18, 28, 36‰) over a 7-month period. also assessed fry direct transfer high (36‰) without prior acclimatization. A total 216 females (initial body weight: 182 ± 1.8 g) 72 males 201 0.88 randomly assigned 18 concrete tanks (2 × 6 1 m) investigate effects BFT spawning performance larval survival under high-salinity conditions. findings indicated that appropriate (18‰) positively affected efficiency, enhanced immunological parameters, improved growth but elevated led reduced success hindered red tilapia thrive quality conditions are acceptable limits. High environments increased dissolved oxygen pH, especially ponds. time, production. It hatchability, quality, yolk sac absorption. broodstock showed higher key proteins (total protein, albumin, globulin) which helped counteract negative their overall health stress tolerance. In environments, rates rates. conclusion, improves salinity. enhances survival, while improving function, making it sustainable solution for aquaculture saline environments.

Language: Английский

Citations

0

RNA-Seq Reveals Adaptation Strategy in Grass Carp (Ctenopharyngodon idella) Under Hypersaline Conditions DOI Open Access
Tao Zhu, Hongmei Song, Zhu Zhu

et al.

International Journal of Molecular Sciences, Journal Year: 2025, Volume and Issue: 26(7), P. 2930 - 2930

Published: March 24, 2025

Grass carp (Ctenopharyngodon idella) is a key aquaculture species, and understanding its adaptation mechanisms to saline environments crucial for addressing the global freshwater salinization challenge. In this study, juvenile grass were acclimated three salinity levels (0, 4, 8 ppt) 30 days, after which gill intestinal tissues sampled quantify cortisol concentrations conduct RNA-seq. Results showed that exhibited salinity-dependent increase, with significantly higher in than tissues, suggesting plays an important role salt of carp. RNA-seq revealed ion transport-related genes upregulated gills, whereas biosynthesis, oxygen transport, energy metabolism downregulated. intestine, involved taurine transport intercellular junctions highly expressed, while immune-related reduced expression. These findings suggest high suppresses respiration efficiency, exchange primarily occurring gills. Functional annotation identified seven candidate (LOC127513882, aqp9b, ca4a, ca5a, igfbp1b, slc12a2, slc12a4) as regulators adaptation. Overall, our study provides valuable insights into underlying tolerance

Language: Английский

Citations

0

The growth performance, feed efficiency, intestinal histo-morphological indices, antioxidat ive status, and related genes of Nile tilapia (Oreochromis niloticus) fed fermented rice hulls DOI

Mohamed S. El-Ghafloul,

Mostafa Abdel Rahman Ibrahim,

Ibrahim M. Abd El-Razek

et al.

Aquaculture, Journal Year: 2025, Volume and Issue: unknown, P. 742586 - 742586

Published: April 1, 2025

Language: Английский

Citations

0

Predicting Tilapia Productivity in Geothermal Ponds: A Genetic Algorithm Approach for Sustainable Aquaculture Practices DOI Open Access
В С Тынченко,

Oksana Kukartseva,

Yadviga Tynchenko

et al.

Sustainability, Journal Year: 2024, Volume and Issue: 16(21), P. 9276 - 9276

Published: Oct. 25, 2024

This study presents a case focused on sustainable farming practices, specifically the cultivation of tilapia (Mozambican and aureus species) in ponds with geothermal water. research aims to optimize hydrochemical regime experimental enhance growth metrics external characteristics breeders. The dataset encompasses parameters fish feeding base from where were cultivated. Genetic algorithms (GA) employed for hyperparameter optimization (HPO) deep neural networks (DNN) prediction productivity each pond under varying conditions, achieving an R2 score 0.94. GA-driven HPO process is robust method optimizing aquaculture practices by accurately predicting how different conditions feed bases influence tilapia. By determining these factors, model promotes improving breeding outcomes maximizing aquaculture. approach can also be applied other systems, enhancing efficiency sustainability across various species.

Language: Английский

Citations

3