In preprints: giving the developing brain the energy it needs DOI Creative Commons
Taylor R. Pennington, Madeline G. Andrews

Development, Journal Year: 2025, Volume and Issue: 152(2)

Published: Jan. 15, 2025

Metabolism is increasingly appreciated for its active role in tissue development during embryogenesis, particularly discrete instruction brain growth and formation. Catabolic programs are essential the breakdown of nutrients to provide energy anabolic processes that construct macromolecules cell structures required expansion organization (Rajan Fame, 2024). Nutrient availability environmental factors influence bioenergetic state developing cells, instruct cellular tissue-specific niches throughout embryogenesis (Traxler et al., 2021; Andrews Pearson, Intracellular metabolism uses external cues from maternal embryonic environments modify gene expression through epigenetic modifications genomic accessibility (Reid 2017; Sánchez-Ramírez Therefore, assessing relationship between metabolome developmental can insights into mechanisms regulate proliferation, differentiation maturation formation.A recent preprint by Saha colleagues highlights importance nutrient examining effects methionine restriction on cellular- tissue-level changes (Saha 2024 preprint). Methionine, conjunction with other metabolites, interconnected numerous metabolic pathways signaling cascades coordinate function (Sanderson 2019). This study evaluated impact dietary mice day (E) 9.5 gestation or exclusively neurogenesis. The results demonstrate neural progenitors display particular vulnerability, leading downstream decreases neurons astrocytes. Progenitors indicators quiescence suggested differentiation, markers. While restoring levels rescued neuron production, there were continued differences methylation marks, presumably compromised delayed gliogenesis. These findings prompt further questions about how substrates timing fate decisions.In addition availability, a Rodriguez Salazar evaluates mitochondrial dynamics astrocyte morphology rats (Salazar During postnatal development, astrocytes undergo structural functional progress mature state, shifting catabolic support increased demands (Zehnder Marina 2018). balance mitochondria fission, fusion transport coordinating specialized functions (Tábara authors discovered Drp-1-mediated fission enables localization distal higher degrees branching more-complex morphologies. resulting high content establish proper Cx43 gap junction protein abundance an evenly dispersed domain across cortex. Their indicate maturing astrocytes, which mediate complex intercellular, synaptic regulation. Notably, drives glycolytic activity due decreased oxidative phosphorylation efficiency ROS production (Zong 2024; Chen Chan, 2017). Mature have glycolysis influx lactate provides fuel surrounding neurons. morphological complexity supports cortical development.Collectively, these studies highlight unique requirements populations based their rodent Each indicates rewiring accommodate dynamic activities development. Metabolic progenitor cells progeny capacity self-renewal (Zhang 2018; Folmes 2012). consequences production. point response correspond altered quiescence, proliferation impaired neurogenesis gliogenesis, depending duration. focus supportive terminally differentiated later stages astrocytic maturation. Together, clarify stages. change, window, duration perturbation assessments distinct, both manuscripts observe disturbances glial whether In changes, alterations, either tiling territory spatial laminae. Collectively, cell-specific regulates may longitudinal health homeostasis.As describe, affect composition organizational features. Of note, had largest effect weight, compared organs, suggesting neurodevelopmental be vulnerable changes. particular, preferentially impacted, perhaps central nervous system (CNS) (Marina Xiong 2022). proportional decrease types catastrophic long-term (Jourdon 2023; Klingler 2021), also suggest certain pliability fluctuations rescue if reversed relevant windows. Restoration loss after reversal, Drp1 restored fission-regulated morphology. modulate potentially therapeutically target dysfunctional implicated neurological disease. A variety disorders, including autism attention deficit hyperactivity disorder (ADHD), errors metabolism; thus, understanding origins potential treatment valuable (Oyarzábal Pinto Payares 2024).Moving forward, measurements shifts determine bioenergetics affected Mitochondrial biosensors assess real-time, using microscopy (Cambronne 2016; Glancy, 2020). Metabolomic methods magnetic resonance (quantifiable) mass spectrometry (targeted untargeted) comprehensively characterize profiles map pathway isotopic tracers (Johnson Antoniewicz, use gold-standard cutting-edge technologies paired temporal lens will continue illuminate orchestrates programs.

Language: Английский

Inferring and perturbing cell fate regulomes in human brain organoids DOI Creative Commons
Jonas Simon Fleck, Sophie Jansen, Damian Wollny

et al.

Nature, Journal Year: 2022, Volume and Issue: 621(7978), P. 365 - 372

Published: Oct. 5, 2022

Self-organizing neural organoids grown from pluripotent stem cells

Language: Английский

Citations

182

Single-cell brain organoid screening identifies developmental defects in autism DOI Creative Commons
Chong Li, Jonas Simon Fleck, Catarina Martins‐Costa

et al.

Nature, Journal Year: 2023, Volume and Issue: 621(7978), P. 373 - 380

Published: Sept. 13, 2023

Abstract The development of the human brain involves unique processes (not observed in many other species) that can contribute to neurodevelopmental disorders 1–4 . Cerebral organoids enable study a context. We have developed CRISPR–human organoids–single-cell RNA sequencing (CHOOSE) system, which uses verified pairs guide RNAs, inducible CRISPR–Cas9-based genetic disruption and single-cell transcriptomics for pooled loss-of-function screening mosaic organoids. Here we show perturbation 36 high-risk autism spectrum disorder genes related transcriptional regulation uncovers their effects on cell fate determination. find dorsal intermediate progenitors, ventral progenitors upper-layer excitatory neurons are among most vulnerable types. construct developmental gene regulatory network cerebral from transcriptomes chromatin modalities identify disorder-associated perturbation-enriched modules. Perturbing members BRG1/BRM-associated factor (BAF) remodelling complex leads enrichment telencephalon progenitors. Specifically, mutating BAF subunit ARID1B affects transition oligodendrocyte interneuron precursor cells, phenotype confirmed patient-specific induced pluripotent stem cell-derived Our paves way high-throughput phenotypic characterization disease susceptibility organoid models with state, molecular pathway readouts.

Language: Английский

Citations

126

Genetics of human brain development DOI
Yi Zhou, Hongjun Song, Guo‐li Ming

et al.

Nature Reviews Genetics, Journal Year: 2023, Volume and Issue: 25(1), P. 26 - 45

Published: July 28, 2023

Language: Английский

Citations

70

Massively parallel in vivo Perturb-seq reveals cell-type-specific transcriptional networks in cortical development DOI Creative Commons

Xinhe Zheng,

Boli Wu,

Yuejia Liu

et al.

Cell, Journal Year: 2024, Volume and Issue: 187(13), P. 3236 - 3248.e21

Published: May 20, 2024

Leveraging AAVs' versatile tropism and labeling capacity, we expanded the scale of in vivo CRISPR screening with single-cell transcriptomic phenotyping across embryonic to adult brains peripheral nervous systems. Through extensive tests 86 vectors AAV serotypes combined a transposon system, substantially amplified efficacy accelerated gene delivery from weeks days. Our proof-of-principle utero screen identified pleiotropic effects Foxg1, highlighting its tight regulation distinct networks essential for cell fate specification Layer 6 corticothalamic neurons. Notably, our platform can label >6% cerebral cells, surpassing current state-of-the-art at <0.1% by lentivirus, achieve analysis over 30,000 cells one experiment enable massively parallel Perturb-seq. Compatible various phenotypic measurements (single-cell or spatial multi-omics), it presents flexible approach interrogate function types vivo, translating variants their causal function.

Language: Английский

Citations

23

A human-specific, concerted repression of microcephaly genes contributes to radiation-induced growth defects in cortical organoids DOI Creative Commons
Jéssica Honorato Ribeiro,

Emre Etlioglu,

Jasmine Buset

et al.

iScience, Journal Year: 2025, Volume and Issue: 28(2), P. 111853 - 111853

Published: Jan. 21, 2025

Language: Английский

Citations

2

Web-accessible application for identifying pathogenic transcripts with RNA-seq: Increased sensitivity in diagnosis of neurodevelopmental disorders DOI Creative Commons
Jordy Dekker, Rachel Schot, Michiel Bongaerts

et al.

The American Journal of Human Genetics, Journal Year: 2023, Volume and Issue: 110(2), P. 251 - 272

Published: Jan. 19, 2023

Language: Английский

Citations

29

Neural stem cell metabolism revisited: a critical role for mitochondria DOI Open Access
Valentina Scandella, Francesco Petrelli, Darcie L. Moore

et al.

Trends in Endocrinology and Metabolism, Journal Year: 2023, Volume and Issue: 34(8), P. 446 - 461

Published: June 26, 2023

Language: Английский

Citations

23

SYNGAP1 deficiency disrupts synaptic neoteny in xenotransplanted human cortical neurons in vivo DOI Creative Commons
Ben Vermaercke, Ryohei Iwata, Keimpe Wierda

et al.

Neuron, Journal Year: 2024, Volume and Issue: 112(18), P. 3058 - 3068.e8

Published: Aug. 6, 2024

Human brain ontogeny is characterized by a considerably prolonged neotenic development of cortical neurons and circuits. Neoteny thought to be essential for the acquisition advanced cognitive functions, which are typically altered in intellectual disability (ID) autism spectrum disorders (ASDs). neuronal neoteny could disrupted some forms ID and/or ASDs, but this has never been tested. Here, we use xenotransplantation human into mouse model SYNGAP1 haploinsufficiency, one most prevalent genetic causes ID/ASDs. We find that SYNGAP1-deficient display strong acceleration morphological functional synaptic formation maturation alongside plasticity. At circuit level, SYNGAP1-haploinsufficient precocious responsiveness visual stimulation months ahead time. Our findings indicate required cell autonomously neoteny, providing novel links between human-specific developmental mechanisms

Language: Английский

Citations

12

Neuronal hyperactivity in neurons derived from individuals with gray matter heterotopia DOI Creative Commons

Francesco Di Matteo,

Rebecca Bonrath, Veronica M. Pravatà

et al.

Nature Communications, Journal Year: 2025, Volume and Issue: 16(1)

Published: Feb. 18, 2025

Abstract Periventricular heterotopia (PH), a common form of gray matter associated with developmental delay and drug-resistant seizures, poses challenge in understanding its neurophysiological basis. Human cerebral organoids (hCOs) derived from patients causative mutations FAT4 or DCHS1 mimic PH features. However, neuronal activity these 3D models has not yet been investigated. Here we show that silicon probe recordings reveal exaggerated spontaneous spike hCOs, suggesting functional changes networks. Transcriptome proteome analyses identify morphology synaptic function. Furthermore, patch-clamp decreased threshold specifically neurons, likely due to increased somatic voltage-gated sodium channels. Additional morphological complexity neurons alterations contributing hyperactivity, rescue observed by wild-type expression. Overall, provide new comprehensive insights into the cellular underlying symptoms heterotopia.

Language: Английский

Citations

1

Cell-type-specific roles of FOXP1 in the excitatory neuronal lineage during early neocortical murine development DOI Creative Commons
Ana Ortiz, Fatma Ayhan, Nitin Khandelwal

et al.

Cell Reports, Journal Year: 2025, Volume and Issue: 44(3), P. 115384 - 115384

Published: March 1, 2025

Forkhead box protein P1 (FOXP1), a transcription factor enriched in the neocortex, is associated with autism spectrum disorders (ASDs) and FOXP1 syndrome. Emx1Cre/+;Foxp1fl/fl conditional deletion (Foxp1 knockout [cKO]) mouse cortex leads to overall reduced thickness, alterations cortical lamination, changes relative thickness of layers. However, developmental cell-type-specific mechanisms underlying these remained unclear. We find that Foxp1 results accelerated pseudo-age during early neurogenesis, increased cell cycle exit late altered gene expression chromatin accessibility, selective migration deficits subset upper-layer neurons. These data explain postnatal differences observed layers thickness. also highlight genes regulated by their enrichment high-confidence ASD or synaptic genes. Together, underscore network neurodevelopmental-disorder-related may serve as potential modulatory targets for modification relevant ASDs

Language: Английский

Citations

1