BioDeepTime: A database of biodiversity time series for modern and fossil assemblages DOI Creative Commons
Jansen A. Smith, Marina C. Rillo, Ádám T. Kocsis

et al.

Global Ecology and Biogeography, Journal Year: 2023, Volume and Issue: 32(10), P. 1680 - 1689

Published: July 25, 2023

Abstract Motivation We have little understanding of how communities respond to varying magnitudes and rates environmental perturbations across temporal scales. BioDeepTime harmonizes assemblage time series presence abundance data help facilitate investigations community dynamics timescales the response natural anthropogenic stressors. includes terrestrial aquatic assemblages spatial grain extent from present‐day millions years ago. Main Types Variables Included currently contains 7,437,847 taxon records 10,062 series, each with a minimum 10 steps. Age constraints, sampling method, environment taxonomic scope are provided for series. Spatial Location Grain The database 8752 unique locations freshwater, marine ecosystems. represented by individual samples varies quadrats on order several cm 2 grid cells ~100 km . Time Period in aggregate spans last 451 million years, modern fossil ranging years. median is 18.7 54,872 Temporal grain, encompassed samples, ranges days tens thousands Major Taxa Level Measurement information 28,777 taxa 4,769,789 at species level another 271,218 known genus level, including benthic planktonic foraminifera, coccolithophores, diatoms, ostracods, plants (pollen), radiolarians other invertebrates vertebrates. There date 7012 3050 BioDeepTime. Software Format SQLite, Comma‐separated values.

Language: Английский

Effects of human activities on mountain forest in northern China during the middle Holocene DOI
Xiuxiu Ren, Xiaozhong Huang, Chong Huang

et al.

Quaternary Science Reviews, Journal Year: 2022, Volume and Issue: 288, P. 107580 - 107580

Published: June 10, 2022

Language: Английский

Citations

33
Planetary‐scale change to the biosphere signalled by global species translocations can be used to identify the Anthropocene DOI Creative Commons
Mark Williams, Reinhold Leinfelder, Anthony D. Barnosky

et al.

Palaeontology, Journal Year: 2022, Volume and Issue: 65(4)

Published: July 1, 2022

Abstract We examine three distinctive biostratigraphic signatures of humans associated with hunting and gathering, landscape domestication globalization. All have significant fossil records regional importance that can be correlated inter‐regionally help describe the developing pattern human expansion appropriation resources. While none individual first or last appearances provide a globally isochronous marker, all overlap stratigraphically, in they are part continuum change, complex patterns. Here we show during later stages globalization, late nineteenth to twentieth century species translocations used build an interconnected web palaeontological correlation decadal sub‐decadal precision dovetails other stratigraphic markers for Anthropocene. This is also proxy accelerating extinction state shift biosphere century.

Language: Английский

Citations

29
A guide to the processing and standardization of global palaeoecological data for large‐scale syntheses using fossil pollen DOI Creative Commons
Suzette G. A. Flantua, Ondřej Mottl, Vivian A. Felde

et al.

Global Ecology and Biogeography, Journal Year: 2023, Volume and Issue: 32(8), P. 1377 - 1394

Published: May 2, 2023

Abstract Aim Palaeoecological data are crucial for comprehending large‐scale biodiversity patterns and the natural anthropogenic drivers that influence them over time. Over last decade, availability of open‐access research databases palaeoecological proxies has substantially increased. These open door to questions needing advanced numerical analyses modelling based on big‐data compilations. However, compiling analysing pose unique challenges require a guide producing standardized reproducible Innovation We present step‐by‐step how process fossil pollen into dataset compilation ready macroecological analyses. describe successive criteria will enhance quality Though these project question‐dependent, we discuss most important assumptions should be considered adjusted accordingly. Our is accompanied by an R‐workflow—called FOSSILPOL —and corresponding R‐package—called R‐Fossilpol— provide detailed protocol interdisciplinary users. illustrate workflow sourcing processing Scandinavian datasets show reproducibility continental‐scale processing. Main Conclusions The study through time space requires syntheses datasets. preparation such must transparent reproducible. With our R‐package, optimal handling large compilations reproducibility. also relevant synthesis other as offers synthetic cross‐disciplinary with macroecological, biogeographical perspectives. emphasize expertise informed decisions knowledge remain high‐quality strongly embedded in studies rely increasing amount data.

Language: Английский

Citations

22
Anthropogenic land-use legacies underpin climate change-related risks to forest ecosystems DOI Open Access
Albert Vilà‐Cabrera, Julen Astigarraga, Alistair S. Jump

et al.

Trends in Plant Science, Journal Year: 2023, Volume and Issue: 28(10), P. 1132 - 1143

Published: May 31, 2023

Language: Английский

Citations

20
BioDeepTime: A database of biodiversity time series for modern and fossil assemblages DOI Creative Commons
Jansen A. Smith, Marina C. Rillo, Ádám T. Kocsis

et al.

Global Ecology and Biogeography, Journal Year: 2023, Volume and Issue: 32(10), P. 1680 - 1689

Published: July 25, 2023

Abstract Motivation We have little understanding of how communities respond to varying magnitudes and rates environmental perturbations across temporal scales. BioDeepTime harmonizes assemblage time series presence abundance data help facilitate investigations community dynamics timescales the response natural anthropogenic stressors. includes terrestrial aquatic assemblages spatial grain extent from present‐day millions years ago. Main Types Variables Included currently contains 7,437,847 taxon records 10,062 series, each with a minimum 10 steps. Age constraints, sampling method, environment taxonomic scope are provided for series. Spatial Location Grain The database 8752 unique locations freshwater, marine ecosystems. represented by individual samples varies quadrats on order several cm 2 grid cells ~100 km . Time Period in aggregate spans last 451 million years, modern fossil ranging years. median is 18.7 54,872 Temporal grain, encompassed samples, ranges days tens thousands Major Taxa Level Measurement information 28,777 taxa 4,769,789 at species level another 271,218 known genus level, including benthic planktonic foraminifera, coccolithophores, diatoms, ostracods, plants (pollen), radiolarians other invertebrates vertebrates. There date 7012 3050 BioDeepTime. Software Format SQLite, Comma‐separated values.

Language: Английский

Citations

20