Targeted protein posttranslational modifications by chemically induced proximity for cancer therapy DOI Creative Commons
Yunhua Peng, Jing Liu, Hiroyuki Inuzuka

et al.

Journal of Biological Chemistry, Journal Year: 2023, Volume and Issue: 299(4), P. 104572 - 104572

Published: March 2, 2023

Post-translational modifications (PTMs) regulate all aspects of protein function. Therefore, upstream regulators PTMs, such as kinases, acetyltransferases, or methyltransferases, are potential therapeutic targets for human diseases, including cancer. To date, multiple inhibitors and/or agonists these PTM in clinical use, while others still development. However, control not only the PTMs disease-related target proteins but also other disease-irrelevant substrate proteins. Thus, nontargeted perturbing activities may introduce unwanted off-target toxicity issues that limit use drugs successful applications. alternative solely a specific disease-relevant provide more precise effect treating disease with relatively low side effects. this end, chemically induced proximity has recently emerged powerful research tool, and several chemical inducers (CIPs) have been used to ubiquitination, phosphorylation, acetylation, glycosylation. These CIPs high be translated into examples PROTACs MGDs now trials. Hence, need developed cover types methylation palmitoylation, thus providing full spectrum tools basic application effective cancer treatment. Eukaryotic cells rely on posttranslational activity, stability, subcellular localization, protein–protein interactions (PPIs) (1Beltrao P. Albanèse V. Kenner L.R. Swaney D.L. Burlingame A. Villén J. et al.Systematic functional prioritization modifications.Cell. 2012; 150: 413-425Abstract Full Text PDF PubMed Scopus (306) Google Scholar, 2Walsh G. Jefferis R. context proteins.Nat. Biotechnol. 2006; 24: 1241-1252Crossref (742) 3Deribe Y.L. Pawson T. Dikic I. signal integration.Nat. Struct. Mol. Biol. 2010; 17: 666-672Crossref (541) 4Peng Y. Liu H. Long mitochondrial metabolic enzymes cancer.Free Radic. 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Language: Английский

SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization DOI Creative Commons
Lukas M. Orre, Mattias Vesterlund, Yanbo Pan

et al.

Molecular Cell, Journal Year: 2019, Volume and Issue: 73(1), P. 166 - 182.e7

Published: Jan. 1, 2019

Language: Английский

Citations

194

Coordination between Two Branches of the Unfolded Protein Response Determines Apoptotic Cell Fate DOI Creative Commons

Tsun-Kai Chang,

David A. Lawrence, Min Lu

et al.

Molecular Cell, Journal Year: 2018, Volume and Issue: 71(4), P. 629 - 636.e5

Published: Aug. 1, 2018

Language: Английский

Citations

170

Protein Serine/Threonine Phosphatases: Keys to Unlocking Regulators and Substrates DOI
David L. Brautigan, Shirish Shenolikar

Annual Review of Biochemistry, Journal Year: 2018, Volume and Issue: 87(1), P. 921 - 964

Published: June 20, 2018

Protein serine/threonine phosphatases (PPPs) are ancient enzymes, with distinct types conserved across eukaryotic evolution. PPPs segregated into primarily on the basis of unique interactions PPP catalytic subunits regulatory proteins. The resulting holoenzymes dock substrates distal to active site enhance specificity. This review focuses subunit and substrate for that depend short linear motifs. Insights about these motifs from structures open new opportunities computational biology approaches elucidate networks. There is an expanding knowledge base posttranslational modifications subunits, as well their substrates, including phosphorylation, acetylation, ubiquitination. Cross talk between creates PPP-based signaling. Knowledge complexes, signaling clusters, how communicate each other in response cellular signals should unlock doors networks “clouds” orchestrate coordinate different aspects cell physiology.

Language: Английский

Citations

166

Protein posttranslational modifications in health and diseases: Functions, regulatory mechanisms, and therapeutic implications DOI Creative Commons
Qian Zhong,

Xina Xiao,

Yijie Qiu

et al.

MedComm, Journal Year: 2023, Volume and Issue: 4(3)

Published: May 2, 2023

Protein posttranslational modifications (PTMs) refer to the breaking or generation of covalent bonds on backbones amino acid side chains proteins and expand diversity proteins, which provides basis for emergence organismal complexity. To date, more than 650 types protein modifications, such as most well-known phosphorylation, ubiquitination, glycosylation, methylation, SUMOylation, short-chain long-chain acylation redox irreversible have been described, inventory is still increasing. By changing conformation, localization, activity, stability, charges, interactions with other biomolecules, PTMs ultimately alter phenotypes biological processes cells. The homeostasis important human health. Abnormal may cause changes in properties loss functions, are closely related occurrence development various diseases. In this review, we systematically introduce characteristics, regulatory mechanisms, functions health addition, therapeutic prospects diseases by targeting associated enzymes also summarized. This work will deepen understanding promote discovery diagnostic prognostic markers drug targets

Language: Английский

Citations

135

Targeting protein phosphatases in cancer immunotherapy and autoimmune disorders DOI Open Access
Stephanie M. Stanford, Nunzio Bottini

Nature Reviews Drug Discovery, Journal Year: 2023, Volume and Issue: 22(4), P. 273 - 294

Published: Jan. 24, 2023

Language: Английский

Citations

74

The intrinsic substrate specificity of the human tyrosine kinome DOI Creative Commons
Tomer M. Yaron, Brian A. Joughin, Emily M. Huntsman

et al.

Nature, Journal Year: 2024, Volume and Issue: 629(8014), P. 1174 - 1181

Published: May 8, 2024

Abstract Phosphorylation of proteins on tyrosine (Tyr) residues evolved in metazoan organisms as a mechanism coordinating tissue growth 1 . Multicellular eukaryotes typically have more than 50 distinct protein Tyr kinases that catalyse the phosphorylation thousands throughout proteome 1–3 How given kinase can phosphorylate specific subset at unique sites is only partially understood 4–7 Here we used combinatorial peptide arrays to profile substrate sequence specificity all human kinases. Globally, demonstrate considerable diversity optimal patterns surrounding site phosphorylation, revealing functional organization kinome by motif preference. Using this information, are most compatible with phosphorylating any be identified. Analysis mass spectrometry phosphoproteomic datasets using compendium specificities accurately identifies dysregulated cells after stimulation factors, treatment anti-cancer drugs or expression oncogenic variants. Furthermore, topology known signalling networks naturally emerged from comparison and SH2 phosphotyrosine (pTyr)-binding domains. Finally show intrinsic has remained fundamentally unchanged worms humans, suggesting fidelity between their sequences been maintained across hundreds millions years evolution.

Language: Английский

Citations

45

Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers DOI
Jeffrey A. Klomp, Jennifer E. Klomp, Clint A. Stalnecker

et al.

Science, Journal Year: 2024, Volume and Issue: 384(6700)

Published: June 6, 2024

How the

Language: Английский

Citations

39

Determining the ERK-regulated phosphoproteome driving KRAS-mutant cancer DOI
Jennifer E. Klomp, J. Nathaniel Diehl, Jeffrey A. Klomp

et al.

Science, Journal Year: 2024, Volume and Issue: 384(6700)

Published: June 6, 2024

To delineate the mechanisms by which ERK1 and ERK2 mitogen-activated protein kinases support mutant KRAS–driven cancer growth, we determined ERK-dependent phosphoproteome in KRAS-mutant pancreatic cancer. We that share near-identical signaling transforming outputs KRAS-regulated is driven nearly completely ERK. identified 4666 phosphosites on 2123 proteins, of 79 66%, respectively, were not previously associated with ERK, substantially expanding depth breadth phosphorylation events revealing a considerably more complex function for ERK established controls highly dynamic converges cyclin-dependent kinase regulation RAS homolog guanosine triphosphatase (RHO GTPase). Our findings establish most comprehensive molecular portrait drives KRAS-dependent growth.

Language: Английский

Citations

24

New Perspectives, Opportunities, and Challenges in Exploring the Human Protein Kinome DOI Open Access

Leah Wilson,

Adam J. Linley, Dean E. Hammond

et al.

Cancer Research, Journal Year: 2017, Volume and Issue: 78(1), P. 15 - 29

Published: Dec. 18, 2017

Abstract The human protein kinome comprises 535 proteins that, with the exception of approximately 50 pseudokinases, control intracellular signaling networks by catalyzing phosphorylation multiple substrates. While a major research focus last 30 years has been cancer-associated Tyr and Ser/Thr kinases, over 85% identified to be dysregulated in at least one disease or developmental disorder. Despite this remarkable statistic, for majority kinases there are currently no inhibitors progressing toward clinic, most cases, details their physiologic pathologic mechanisms remain partially obscure. By curating annotating data from literature public databases sites, associations, we generate an unbiased resource that highlights areas unmet need within kinome. We discuss strategies challenges associated characterizing catalytic noncatalytic outputs cells, describe successes new frontiers will support more comprehensive cancer-targeting therapeutic evaluation future. Cancer Res; 78(1); 15–29. ©2017 AACR.

Language: Английский

Citations

147

PPM1H phosphatase counteracts LRRK2 signaling by selectively dephosphorylating Rab proteins DOI Creative Commons
Kerryn Berndsen, Paweł Lis, Wondwossen M Yeshaw

et al.

eLife, Journal Year: 2019, Volume and Issue: 8

Published: Oct. 30, 2019

Mutations that activate LRRK2 protein kinase cause Parkinson's disease. phosphorylates a subset of Rab GTPases within their Switch-II motif controlling interaction with effectors. An siRNA screen all human phosphatases revealed poorly studied phosphatase, PPM1H, counteracts signaling by specifically dephosphorylating proteins. PPM1H knockout increased endogenous phosphorylation and inhibited dephosphorylation in A549 cells. Overexpression suppressed LRRK2-mediated phosphorylation. also efficiently directly dephosphorylated Rab8A biochemical studies. A "substrate-trapping" mutant (Asp288Ala) binds high affinity to endogenous, LRRK2-phosphorylated proteins, thereby blocking seen upon addition inhibitors. is localized the Golgi its knockdown suppresses primary cilia formation, similar pathogenic LRRK2. Thus, acts as key modulator activity enhancers could offer new therapeutic approach prevent or treat

Language: Английский

Citations

116