Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils DOI Open Access
Dawn E. Holmes,

Pravin Malla Shrestha,

David J. F. Walker

et al.

Applied and Environmental Microbiology, Journal Year: 2017, Volume and Issue: 83(9)

Published: March 4, 2017

ABSTRACT The possibility that Methanothrix (formerly Methanosaeta ) and Geobacter species cooperate via direct interspecies electron transfer (DIET) in terrestrial methanogenic environments was investigated rice paddy soils. Genes with high sequence similarity to the gene for PilA pilin monomer of electrically conductive pili (e-pili) sulfurreducens accounted over half sequences metagenomic libraries 42% mRNA transcripts RNA sequencing (RNA-seq) libraries. This abundance e-pilin genes is significant because e-pili can serve as conduits DIET. Most were affiliated species, but most closely related putative from genera such Desulfobacterium , Deferribacter Geoalkalibacter Desulfobacula also detected. Approximately 17% all metatranscriptomic bacterial clustered finding spp. actively transcribing growth-related indicated they metabolically active coding among highly transcribed genes. In addition, homologs encoding OmcS, a c -type cytochrome associated G. required DIET, expressed soils enzymes involved reduction carbon dioxide methane. DIET only donor known support CO 2 . Thus, these results are consistent model which providing electrons methane production through electrical connections e-pili. IMPORTANCE some important microbial contributors global production, surprisingly little about their physiology ecology. source it demonstrates contribution makes may extend beyond conversion acetate Furthermore, defined coculture studies have suggested when receive energy grow faster than sole source. growth metabolism be more robust generally considered. suggest reason repeatedly found microorganisms syntrophically cooperation spp., possibly other methanogens,

Language: Английский

Extracellular electron transfer mechanisms between microorganisms and minerals DOI
Liang Shi, Hailiang Dong, Gemma Reguera

et al.

Nature Reviews Microbiology, Journal Year: 2016, Volume and Issue: 14(10), P. 651 - 662

Published: Aug. 30, 2016

Language: Английский

Citations

1522

Electroactive microorganisms in bioelectrochemical systems DOI
Bruce E. Logan, Ruggero Rossi, Ala’a Ragab

et al.

Nature Reviews Microbiology, Journal Year: 2019, Volume and Issue: 17(5), P. 307 - 319

Published: March 7, 2019

Language: Английский

Citations

1185

Microbial Surface Colonization and Biofilm Development in Marine Environments DOI Open Access
Hongyue Dang,

Charles R. Lovell

Microbiology and Molecular Biology Reviews, Journal Year: 2015, Volume and Issue: 80(1), P. 91 - 138

Published: Dec. 24, 2015

Biotic and abiotic surfaces in marine waters are rapidly colonized by microorganisms. Surface colonization subsequent biofilm formation development provide numerous advantages to these organisms support critical ecological biogeochemical functions the changing environment. Microbial surface association also contributes deleterious effects such as biofouling, biocorrosion, persistence transmission of harmful or pathogenic microorganisms their genetic determinants. The processes mechanisms well key players among surface-associated microbiota have been studied for several decades. Accumulating evidence indicates that specific cell-surface, cell-cell, interpopulation interactions shape composition, structure, spatiotemporal dynamics, microbial communities. Several mechanisms, including (i) surface, population, community sensing signaling, (ii) intraspecies interspecies communication interaction, (iii) regulatory balance between cooperation competition, identified lifestyle. In this review, recent progress study is synthesized discussed. Major gaps our knowledge remain. We pose questions targeted investigation surface-specific community-level features, answers which would advance understanding ecology communities at levels from molecular mechanistic details through systems biological integration.

Language: Английский

Citations

948

Single cell activity reveals direct electron transfer in methanotrophic consortia DOI
Shawn E. McGlynn, Grayson L. Chadwick, Christopher P. Kempes

et al.

Nature, Journal Year: 2015, Volume and Issue: 526(7574), P. 531 - 535

Published: Sept. 16, 2015

Language: Английский

Citations

613

Syntrophy Goes Electric: Direct Interspecies Electron Transfer DOI Open Access
Derek R. Lovley

Annual Review of Microbiology, Journal Year: 2017, Volume and Issue: 71(1), P. 643 - 664

Published: July 12, 2017

Direct interspecies electron transfer (DIET) has biogeochemical significance, and practical applications that rely on DIET or DIET-based aspects of microbial physiology are growing. Mechanisms for have primarily been studied in defined cocultures which Geobacter species one the partners. Electrically conductive pili (e-pili) can be an important electrical conduit DIET. However, there may instances contacts made between transport proteins associated with outer membranes Alternatively, partners plug into carbon materials, such as granular activated carbon, cloth, biochar, long-range exchange without need e-pili. Magnetite promotes DIET, possibly by acting a substitute outer-surface c-type cytochromes. is primary mode some anaerobic digesters converting wastes to methane. Promoting materials shows promise stabilizing accelerating methane production digesters, permitting higher organic loading rates. Various lines evidence suggest terrestrial wetlands, source atmospheric also role oxidation coupled sulfate reduction, control releases. The finding serve electrons photosynthesis further broadens its potential environmental significance. Microorganisms capable good catalysts several bioelectrochemical technologies e-pili promising renewable electronic materials. study early stages, additional investigation required better understand diversity microorganisms importance flow environments, biochemistry

Language: Английский

Citations

590

A Review of the Chemistry of Anaerobic Digestion: Methods of Accelerating and Optimizing Process Efficiency DOI Open Access
Anthony Anukam, Ali Mohammadi, Muhammad Naqvi

et al.

Processes, Journal Year: 2019, Volume and Issue: 7(8), P. 504 - 504

Published: Aug. 2, 2019

The anaerobic digestion technology has been in existence for centuries and its underlying theory established decades. It is considered a useful the generation of renewable energy, provides means to alleviate problems associated with low access energy. However, great deal current research targeted towards optimization this under diverse process conditions. This review presents an in-depth analysis chemistry discusses how can be used optimize system performance through identification methods that accelerate syntrophic interactions different microorganisms improved methanogenic reactions. Recent advances addition old are discussed order offer general but comprehensive synopsis accumulated knowledge digestion, as well overview previous future directions opportunities AD technology. Achieving sustainable energy requires reforms not just economic, social policy aspects, also all technical which represents one most crucial investments systems.

Language: Английский

Citations

391

Direct interspecies electron transfer via conductive materials: A perspective for anaerobic digestion applications DOI
Jeong-Hoon Park,

Hyun-Jin Kang,

Kang-Hee Park

et al.

Bioresource Technology, Journal Year: 2018, Volume and Issue: 254, P. 300 - 311

Published: Feb. 2, 2018

Language: Английский

Citations

384

Methanogens: biochemical background and biotechnological applications DOI Creative Commons

Franziska Enzmann,

Florian Mayer, Michael Rother

et al.

AMB Express, Journal Year: 2018, Volume and Issue: 8(1)

Published: Jan. 4, 2018

Since fossil sources for fuel and platform chemicals will become limited in the near future, it is important to develop new concepts energy supply production of basic reagents chemical industry. One alternative crude oil natural gas could be biological conversion CO2 or small organic molecules methane via methanogenic archaea. This process has been known from biogas plants, but recently, insights into metabolism, technical optimizations technology combinations were gained, which would allow moving beyond mere biomass. In steps have undertaken increase yield purity biogas, such as addition hydrogen metal granulate. Furthermore, integration electrodes led development microbial electrosynthesis (MES). The idea behind this technique use electrical power generate metabolism. review summarizes biochemical metabolic background methanogenesis well latest applications methanogens. As a result, shall give sufficient overview over topic both, biologists engineers handling bioelectrochemical methanogenesis.

Language: Английский

Citations

378

A critical review on biochar for enhancing biogas production from anaerobic digestion of food waste and sludge DOI
Manish Kumar, Shanta Dutta, Siming You

et al.

Journal of Cleaner Production, Journal Year: 2021, Volume and Issue: 305, P. 127143 - 127143

Published: April 19, 2021

Language: Английский

Citations

376

Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures DOI Creative Commons
Shanshan Chen, Amelia‐Elena Rotaru, Fanghua Liu

et al.

Bioresource Technology, Journal Year: 2014, Volume and Issue: 173, P. 82 - 86

Published: Sept. 22, 2014

Language: Английский

Citations

357