Frontiers in Nutrition,
Journal Year:
2022,
Volume and Issue:
9
Published: Dec. 1, 2022
Shewanella
putrefaciens
is
a
special
spoilage
bacterium
of
seafood
during
cold
storage,
which
easy
to
form
biofilm
and
bring
serious
hazard
the
quality.
Life
cycle
starts
after
bacterial
adhesion,
essential
for
formation
development
biofilm.
As
ubiquitous
second
messenger
in
bacteria,
c-di-GMP
regulates
conversion
between
planktonic
state
state.
In
this
study,
adhesion
S.
WS13
under
4°C
were
compared
those
30°C.
Atom
force
microscope
scanning
electron
used
study
adhesion.
Biofilm
was
analyzed
by
Fourier
transform
infrared
spectroscopy,
Bradford
assay
phenol-sulfuric
acid
method.
High-performance
liquid
chromatographic-tandem
mass
spectrometric
quantitative
real-time
PCR
applied
level
genes
encoding
diguanylate
cyclases
cells,
respectively.
Results
showed
that
swarming
mobility
weaker
4°C,
however,
adhesive
4-5
times
higher
than
biomass,
extracellular
polysaccharides
proteins
2.5
times,
3
1.6
more
30°C,
respectively,
but
composition
formed
both
temperatures
similar.
30°C
no
half
corresponding
growth
stage
4°C.
Quantitative
analysis
also
expression
significantly
enhanced
adapted
stress
enhancing
promote
formation.
This
provides
theoretical
foundation
research
on
adaptation
mechanism
specific
bacteria
based
c-di-GMP,
new
idea
control
quality
from
perspective
microbial
molecular
biology.
Microorganisms,
Journal Year:
2023,
Volume and Issue:
11(6), P. 1541 - 1541
Published: June 9, 2023
Bacterial
exopolysaccharides
(EPS)
are
essential
natural
biopolymers
used
in
different
areas
including
biomedicine,
food,
cosmetic,
petroleum,
and
pharmaceuticals
also
environmental
remediation.
The
interest
them
is
primarily
due
to
their
unique
structure
properties
such
as
biocompatibility,
biodegradability,
higher
purity,
hydrophilic
nature,
anti-inflammatory,
antioxidant,
anti-cancer,
antibacterial,
immune-modulating
prebiotic
activities.
present
review
summarizes
the
current
research
progress
on
bacterial
EPSs
properties,
biological
functions,
promising
applications
various
fields
of
science,
industry,
medicine,
technology,
well
characteristics
isolation
sources
EPSs-producing
strains.
This
provides
an
overview
latest
advances
study
important
industrial
xanthan,
cellulose,
levan.
Finally,
limitations
future
directions
discussed.
Journal of Bacteriology,
Journal Year:
2024,
Volume and Issue:
206(5)
Published: May 2, 2024
ABSTRACT
Vibrio
(
Aliivibrio
)
fischeri
’s
initial
rise
to
fame
derived
from
its
alluring
production
of
blue-green
light.
Subsequent
studies
probe
the
mechanisms
underlying
this
bioluminescence
helped
field
discover
phenomenon
now
known
as
quorum
sensing.
Orthologs
quorum-sensing
regulators
(i.e.,
LuxR
and
LuxI)
originally
identified
in
V.
were
subsequently
uncovered
a
plethora
bacterial
species,
analogous
pathways
found
yet
others.
Over
past
three
decades,
study
microbe
has
greatly
expanded
unique
role
exclusive
symbiont
light
organ
Hawaiian
bobtail
squid,
Euprymna
scolopes
.
Buoyed
by
optically
amenable
host
persistent
insightful
researchers
who
have
applied
novel
cross-disciplinary
approaches,
developed
into
robust
model
for
microbe-host
associations.
It
contributed
our
understanding
how
bacteria
experience
respond
specific,
often
fluxing
environmental
conditions
which
impact
development
their
host.
also
deepened
numerous
microbial
processes
such
motility
chemotaxis,
biofilm
formation
dispersal,
competition,
relevance
specific
genes
context
colonizing
an
animal
Parallels
these
between
studied
pathogens
are
readily
apparent,
demonstrating
functional
conservation
across
diverse
associations
permitting
reinterpretation
“pathogenesis.”
Collectively,
advances
built
foundation
microbiome
positioned
continue
expand
frontiers
world
inside
animals.
Journal of Bacteriology,
Journal Year:
2024,
Volume and Issue:
206(2)
Published: Jan. 25, 2024
ABSTRACT
Multicellular
communities
of
adherent
bacteria
known
as
biofilms
are
often
detrimental
in
the
context
a
human
host,
making
it
important
to
study
their
formation
and
dispersal,
especially
animal
models.
One
such
model
is
symbiosis
between
squid
Euprymna
scolopes
bacterium
Vibrio
fischeri
.
Juvenile
hatch
aposymbiotically
selectively
acquire
symbiont
from
natural
seawater
containing
diverse
environmental
microbes.
Successful
pairing
facilitated
by
ciliary
movements
that
direct
quiet
zones
on
surface
squid’s
symbiotic
light
organ
where
V.
forms
small
aggregate
or
biofilm.
Subsequently,
disperse
enter
organ,
ultimately
reaching
colonizing
deep
crypt
spaces.
Although
transient,
critical
for
optimal
colonization
tightly
controlled.
In
vitro
studies
have
identified
variety
polysaccharides
proteins
comprise
extracellular
matrix.
Some
most
well-characterized
matrix
factors
include
polysaccharide
(SYP),
cellulose
polysaccharide,
LapV
adhesin.
this
review,
we
discuss
these
components,
regulation,
other
less
understood
biofilm
contributors.
We
also
highlight
what
currently
about
dispersal
aggregates
host
cues
may
promote
it.
Finally,
briefly
describe
discoveries
gleaned
isolates.
By
unraveling
complexities
involved
’s
control
over
begin
understand
how
environment
triggers
transient
unique
relationship.
mLife,
Journal Year:
2024,
Volume and Issue:
3(1), P. 42 - 56
Published: March 1, 2024
Abstract
Nucleotide
second
messengers
are
highly
versatile
signaling
molecules
that
regulate
a
variety
of
key
biological
processes
in
bacteria.
The
best‐studied
examples
cyclic
AMP
(cAMP)
and
bis‐(3′–5′)‐cyclic
dimeric
guanosine
monophosphate
(c‐di‐GMP),
which
both
act
as
global
regulators.
Global
regulatory
frameworks
c‐di‐GMP
cAMP
bacteria
show
several
parallels
but
also
significant
variances.
In
this
review,
we
illustrate
the
models
two
nucleotide
messengers,
compare
different
between
cAMP,
discuss
mechanisms
physiological
significance
cross‐regulation
cAMP.
responds
to
numerous
signals
dependent
on
great
number
metabolic
enzymes,
it
regulates
various
signal
transduction
pathways
through
its
huge
effectors
with
varying
activities.
contrast,
due
limited
quantity,
enzymes
major
effector
regulated
at
levels
by
diverse
signals.
performs
function
primarily
controlling
transcription
large
genes
via
receptor
protein
(CRP)
most
This
review
can
help
us
understand
how
use
typical
effectively
coordinate
integrate
processes,
providing
theoretical
guidelines
for
future
research.
Journal of Bacteriology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 29, 2025
ABSTRACT
Quorum
sensing
controls
numerous
processes
ranging
from
the
production
of
virulence
factors
to
biofilm
formation.
Biofilms,
communities
bacteria
that
are
attached
one
another
and/or
a
surface,
common
in
nature,
and
when
they
form,
can
produce
quorum
bacteria.
One
model
system
study
biofilms
is
bacterium
Vibrio
fischeri
,
which
forms
promotes
colonization
its
symbiotic
host.
Many
promote
V.
formation
vitro
including
symbiosis
polysaccharide
(SYP)
cellulose,
but
role
currently
understudied.
Recently,
quorum-sensing-dependent
transcription
factor,
LitR,
was
shown
negatively
influence
context
biofilm-overproducing
strain.
To
better
understand
importance
we
identified
conditions
impact
LitR
on
could
be
observed
an
otherwise
wild-type
strain
then
investigated
roles
upstream
regulators
phenotypes.
In
static
conditions,
regulators,
autoinducer
synthases
LuxS
AinS,
contributed
control
over
were
both
SYP
cellulose
dependent.
shaking
liquid
AinS
primarily
modestly
inhibited
manner
depended
factor
VpsR.
These
findings
expand
our
understanding
quorum-sensing
pathway
physiology
illuminate
negative
mechanisms
prevent
robust
by
under
laboratory
conditions.
IMPORTANCE
key
regulatory
mechanism
diverse
phenotypes
bacteria,
.
many
microbes,
has
been
formation,
yet
link
between
This
fills
knowledge
gap
identifying
for
sensing-controlled
LuxS,
inhibiting
specific
It
also
determined
inhibits
genes
required
biosynthesis.
work
thus
expands
complex
regulation.
Research Square (Research Square),
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 21, 2025
Abstract
Background
The
bacterial
second
messenger
c-di-GMP
is
known
to
influence
the
formation
of
biofilms
and
thereby
persistence
pathogenic
beneficial
bacteria
in
hosts.
A
previous
evolution
experiment
with
Pseudomonas
lurida
MYb11,
occasional
symbiont
nematode
Caenorhabditis
elegans,
led
emergence
host-specialized
variants
elevated
intracellular
c-di-GMP.
Thus
far,
molecular
underpinnings
c-di-GMP-mediated
host
specialization
were
unknown
this
symbiosis.
Therefore,
current
study
aimed
at
identifying
candidate
processes
by
combining
transcriptomic
functional
genetic
analyses.
Results
We
found
that
MYb11
specialists
differentially
expressed
genes
related
attachment,
motility
biofilm
production,
including
pelD
from
pel
gene
cluster.
deletion
resulted
reduced
intra-host
competitive
fitness,
lower
numbers
C.
elegans
loss
biomass.
Conclusion
Our
results
identify
as
a
previously
key
modulator
symbiont-host
associations
acts
downstream
BMC Microbiology,
Journal Year:
2025,
Volume and Issue:
25(1)
Published: April 16, 2025
Abstract
Background
The
bacterial
second
messenger
c-di-GMP
is
known
to
influence
the
formation
of
biofilms
and
thereby
persistence
pathogenic
beneficial
bacteria
in
hosts.
A
previous
evolution
experiment
with
Pseudomonas
lurida
MYb11,
occasional
symbiont
nematode
Caenorhabditis
elegans
,
led
emergence
host-specialized
variants
elevated
intracellular
c-di-GMP.
Thus
far,
molecular
underpinnings
c-di-GMP-mediated
host
specialization
were
unknown
this
symbiosis.
Therefore,
current
study
aimed
at
identifying
candidate
processes
by
combining
transcriptomic
functional
genetic
analyses.
Results
We
found
that
MYb11
specialists
differentially
expressed
genes
related
attachment,
motility
biofilm
production,
including
pelD
from
pel
gene
cluster.
deletion
resulted
reduced
intra-host
competitive
fitness,
lower
numbers
C.
loss
biomass.
Conclusion
Our
results
identify
as
a
previously
key
modulator
symbiont-host
associations
acts
downstream
Analytical Chemistry,
Journal Year:
2024,
Volume and Issue:
96(21), P. 8308 - 8316
Published: May 16, 2024
Microbial
biofilms
represent
an
important
lifestyle
for
bacteria
and
are
dynamic
three-dimensional
structures.
Cyclic
dimeric
guanosine
monophosphate
(c-di-GMP)
is
a
ubiquitous
signaling
molecule
that
known
to
be
tightly
regulated
with
biofilm
processes.
While
measurements
of
global
levels
c-di-GMP
have
proven
valuable
toward
understanding
the
genetic
control
production,
there
need
tools
observe
local
changes
production
in
We
developed
label-free
method
direct
detection
microbial
colony
using
matrix-assisted
laser
desorption/ionization
mass
spectrometry
imaging
(MALDI-MSI).
applied
this
enteric
pathogen
Vibrio
cholerae,
marine
symbiont
V.
fischeri,
opportunistic
Pseudomonas
aeruginosa
PA14
detected
spatial
temporal
signal
accompanied
alterations
factors
synthesize
degrade
compound.
further
demonstrated
how
can
simultaneously
detect
additional
metabolites
interest
from
single
sample.
mSystems,
Journal Year:
2023,
Volume and Issue:
9(1)
Published: Dec. 21, 2023
Beneficial
microbial
symbionts
that
are
horizontally
acquired
by
their
animal
hosts
undergo
a
lifestyle
transition
from
free-living
in
the
environment
to
associating
with
host
tissues.
In
model
symbiosis
between
Hawaiian
bobtail
squid
and
its
symbiont
Molecular Plant Pathology,
Journal Year:
2024,
Volume and Issue:
25(7)
Published: July 1, 2024
Abstract
The
second
messenger
cyclic
diguanylate
monophosphate
(c‐di‐GMP)
regulates
a
wide
range
of
bacterial
behaviours
through
diverse
mechanisms
and
binding
receptors.
Single‐domain
PilZ
proteins,
the
most
widespread
abundant
known
c‐di‐GMP
receptors
in
bacteria,
act
as
trans
‐acting
adaptor
proteins
that
enable
to
control
signalling
pathways
with
high
specificity.
This
study
identifies
single‐domain
protein,
XAC3402
(renamed
N5MapZ),
from
phytopathogen
Xanthomonas
citri
subsp.
(Xcc),
which
modulates
Xcc
virulence
by
directly
interacting
methyltransferase
HemK.
Through
yeast
two‐hybrid,
co‐immunoprecipitation
immunofluorescent
staining,
we
demonstrated
N5MapZ
HemK
interact
under
both
vitro
vivo
conditions,
strength
protein–protein
interaction
decreasing
at
concentrations.
finding
distinguishes
other
characterized
it
was
previously
enhances
between
those
PilZs
their
protein
partners.
observation
is
further
supported
fact
binding‐defective
mutant
R10A
can
inhibit
methylation
class
1
translation
termination
release
factor
PrfA.
Additionally,
found
plays
an
important
role
pathogenesis,
deletion
hemK
leads
extensive
phenotypic
changes,
including
reduced
citrus
plants,
decreased
motility,
production
extracellular
enzymes
stress
tolerance.
Gene
expression
analysis
has
revealed
HemK‐mediated
pathway
regulate
multiple
effector
uncovering
novel
regulatory
mechanism
mediating
PrfA
via
N5MapZ.