Trends in Microbiology,
Journal Year:
2020,
Volume and Issue:
29(2), P. 171 - 181
Published: July 1, 2020
Shotgun
sequencing
bypasses
the
need
for
metabarcoding
in
viromics,
although
it
is
prone
to
high
background
noises
and
biases
towards
double-stranded
DNA
viruses.Protein-level
assembly
can
be
a
better
tool
use
on
virome
data
as
they
predict
more
protein
sequences
from
complex
unknown
metagenomes.Using
viral
discovery
methods
help
resolve
full
diversity
of
fraction
microbiome
data.Culture-independent
such
viral-tagging
used
measure
phage
host
range
human
body.
In
this
review
we
provide
an
overview
current
challenges
advances
bacteriophage
research
within
growing
field
viromics.
particular,
discuss,
study
perspective,
emerging
technologies
available,
their
limitations
terms
de
novo
discoveries,
possible
solutions
overcome
present
experimental
computational
associated
with
low
abundance
or
RNA.
We
summarize
recent
breakthroughs
metagenomics
assembling
tools
single-cell
analysis,
which
have
potential
increase
our
understanding
biology,
diversity,
interactions
both
microbial
community
expect
that
these
future
viromics
will
strong
impact
how
develop
phage-based
therapeutic
approaches.
Nontyphoidal
Salmonella
spp.
are
a
leading
cause
of
human
gastrointestinal
infections
and
commonly
transmitted
via
the
consumption
contaminated
meat.
To
limit
spread
other
food-borne
pathogens
in
food
chain,
bacteriophage
(phage)
therapy
could
be
used
during
rearing
or
pre-harvest
stages
animal
production.
This
study
was
conducted
to
determine
if
phage
cocktail
delivered
feed
is
capable
reducing
colonization
experimentally
challenged
chickens
optimal
dose.
A
total
672
broilers
were
divided
into
six
treatment
groups
T1
(no
diet
unchallenged);
T2
(phage
106
PFU/day);
T3
(challenged
group);
T4
105
PFU/day
challenged);
T5
T6
107
challenged).
The
liquid
added
mash
with
ad
libitum
access
available
throughout
study.
By
day
42
(the
concluding
study),
no
detected
faecal
samples
collected
from
group
T4.
isolated
small
number
pens
(3/16)
(2/16)
at
∼4
×
102
CFU/g.
In
comparison,
7/16
∼3
104
Phage
all
three
doses
had
positive
impact
on
growth
performance
birds
increased
weight
gains
comparison
diet.
We
showed
delivering
phages
effective
our
highlights
offer
promising
tool
target
bacterial
poultry.
Nature Communications,
Journal Year:
2024,
Volume and Issue:
15(1)
Published: July 11, 2024
Abstract
As
bacteriophages
continue
to
gain
regulatory
approval
for
personalized
human
therapy
against
antibiotic-resistant
infections,
there
is
a
need
transformative
technologies
rapid
target
identification
through
multiple,
large,
decentralized
therapeutic
phages
biobanks.
Here,
we
design
high
throughput
phage
screening
platform
comprised
of
portable
library
individual
shelf-stable,
ready-to-use
phages,
in
all-inclusive
solid
tablets.
Each
tablet
encapsulates
one
along
with
luciferin
and
luciferase
enzyme
stabilized
sugar
matrix
pullulan
trehalose
capable
directly
detecting
phage-mediated
adenosine
triphosphate
(ATP)
release
ATP
bioluminescence
reaction
upon
bacterial
cell
burst.
The
composition
also
enhances
desiccation
tolerance
all
components,
which
should
allow
easier
cheaper
international
transportation
as
result,
increased
accessibility
phages.
We
demonstrate
by
identifying
select
multidrug-resistant
clinical
isolates
Pseudomonas
aeruginosa
,
Salmonella
enterica
Escherichia
coli
Staphylococcus
aureus
targets
identified
within
30-120
min.
Journal of Clinical Investigation,
Journal Year:
2025,
Volume and Issue:
135(5)
Published: March 2, 2025
Bacteriophage
(phage)
therapy
has
emerged
as
a
promising
solution
to
combat
the
growing
crisis
of
multidrug-resistant
(MDR)
infections.
There
are
several
international
centers
actively
engaged
in
implementation
phage
therapy,
and
recent
case
series
have
reported
encouraging
success
rates
patients
receiving
personalized,
compassionate
for
difficult-to-treat
Nonetheless,
substantial
hurdles
remain
way
more
widespread
adoption
consistent
success.
This
Review
offers
comprehensive
overview
current
technologies
therapeutic
approaches.
We
first
delineate
common
steps
development,
from
bank
establishment
clinical
administration,
examine
spectrum
approaches,
personalized
fixed
cocktails.
Using
framework
conventional
drug
development
pipeline,
we
then
identify
critical
knowledge
gaps
areas
such
cocktail
design,
formulation,
pharmacology,
trial
design.
conclude
that,
while
holds
promise,
structured
pipeline
sustained
government
support
crucial
MDR
Trends in Microbiology,
Journal Year:
2020,
Volume and Issue:
29(2), P. 171 - 181
Published: July 1, 2020
Shotgun
sequencing
bypasses
the
need
for
metabarcoding
in
viromics,
although
it
is
prone
to
high
background
noises
and
biases
towards
double-stranded
DNA
viruses.Protein-level
assembly
can
be
a
better
tool
use
on
virome
data
as
they
predict
more
protein
sequences
from
complex
unknown
metagenomes.Using
viral
discovery
methods
help
resolve
full
diversity
of
fraction
microbiome
data.Culture-independent
such
viral-tagging
used
measure
phage
host
range
human
body.
In
this
review
we
provide
an
overview
current
challenges
advances
bacteriophage
research
within
growing
field
viromics.
particular,
discuss,
study
perspective,
emerging
technologies
available,
their
limitations
terms
de
novo
discoveries,
possible
solutions
overcome
present
experimental
computational
associated
with
low
abundance
or
RNA.
We
summarize
recent
breakthroughs
metagenomics
assembling
tools
single-cell
analysis,
which
have
potential
increase
our
understanding
biology,
diversity,
interactions
both
microbial
community
expect
that
these
future
viromics
will
strong
impact
how
develop
phage-based
therapeutic
approaches.