Habitat-specific regulation of bacterial community dynamics during phytoplankton bloom succession in a subtropical eutrophic lake DOI
Congcong Jiao, Dayong Zhao,

Tianxu Zhou

et al.

Water Research, Journal Year: 2023, Volume and Issue: 242, P. 120252 - 120252

Published: June 19, 2023

Language: Английский

The adaptive microbiome hypothesis and immune interactions in amphibian mucus DOI Creative Commons
Douglas C. Woodhams,

Julia A. McCartney,

Jenifer B. Walke

et al.

Developmental & Comparative Immunology, Journal Year: 2023, Volume and Issue: 145, P. 104690 - 104690

Published: March 29, 2023

Language: Английский

Citations

34

Non‐gene‐editing microbiome engineering of spontaneous food fermentation microbiota—Limitation control, design control, and integration DOI

Liangqiang Chen,

Guozheng Wang,

Mengjing Teng

et al.

Comprehensive Reviews in Food Science and Food Safety, Journal Year: 2023, Volume and Issue: 22(3), P. 1902 - 1932

Published: March 7, 2023

Non-gene-editing microbiome engineering (NgeME) is the rational design and control of natural microbial consortia to perform desired functions. Traditional NgeME approaches use selected environmental variables force Spontaneous food fermentation, oldest kind traditional NgeME, transforms foods into various fermented products using networks. In spontaneous fermentation microbiotas (SFFMs) are typically formed controlled manually by establishment limiting factors in small batches with little mechanization. However, limitation generally leads trade-offs between efficiency quality fermentation. Modern based on synthetic ecology have been developed designed communities explore assembly mechanisms target functional enhancement SFFMs. This has greatly improved our understanding microbiota control, but such still shortcomings compared NgeME. Here, we comprehensively describe research strategies for SFFMs modern We discuss ecological principles two enhance how best SFFM. also review recent applied theoretical propose an integrated vitro model bridge gaps

Language: Английский

Citations

24

Unseen Weapons: Bacterial Extracellular Vesicles and the Spread of Antibiotic Resistance in Aquatic Environments DOI Open Access
Muttiah Barathan, Sook Luan Ng, Yogeswaran Lokanathan

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(6), P. 3080 - 3080

Published: March 7, 2024

This paper sheds light on the alarming issue of antibiotic resistance (ABR) in aquatic environments, exploring its detrimental effects ecosystems and public health. It examines multifaceted role use aquaculture, agricultural runoff, industrial waste fostering development dissemination resistant bacteria. The intricate interplay between various environmental factors, horizontal gene transfer, bacterial extracellular vesicles (BEVs) accelerating spread ABR is comprehensively discussed. Various BEVs carrying genes like blaCTX-M, tetA, floR, sul/I, as well their contribution to dominance multidrug-resistant bacteria, are highlighted. potential both a threat tool combating explored, with promising strategies targeted antimicrobial delivery systems probiotic-derived EVs holding significant promise. underscores urgency understanding environments. By unraveling these unseen weapons, we pave way for developing effective mitigate ABR, advocating multidisciplinary approach that includes stringent regulations, enhanced wastewater treatment, adoption sustainable practices aquaculture.

Language: Английский

Citations

14

Nutrient limitation mediates soil microbial community structure and stability in forest restoration DOI
Haibin Kang,

Yue Xue,

Yongxing Cui

et al.

The Science of The Total Environment, Journal Year: 2024, Volume and Issue: 935, P. 173266 - 173266

Published: May 15, 2024

Language: Английский

Citations

12

Drought legacy interacts with wildfire to alter soil microbial communities in a Mediterranean climate-type forest DOI Creative Commons

A. Hopkins,

Aaron J. Brace,

Jody Bruce

et al.

The Science of The Total Environment, Journal Year: 2024, Volume and Issue: 915, P. 170111 - 170111

Published: Jan. 15, 2024

Mediterranean forest ecosystems will be increasingly affected by hotter drought and more frequent severe wildfire events in the future. However, little is known about longer-term responses of these forests to multiple disturbances forests' capacity maintain ecosystem function. This particularly so for below-ground organisms, which have received less attention than those above-ground, despite their essential contributions We investigated rhizosphere microbial communities a resprouting Eucalyptus marginata forest, southwestern Australia, that had experienced four years previously, eight previously. Our aim was understand how are over trajectories wildfire, singularly, combination. Fungal bacterial DNA extracted from soil samples, amplified, subjected high throughput sequencing. Richness, diversity, composition, putative functional groups were then examined. found monotonic decrease fungal, but not bacterial, richness diversity with increasing disturbance greatest changes resulting combination wildfire. Overall fungal community composition reflected stronger effect fire drought, both produced number indicator taxa fungi, significant negative on abundance several groups. Key mycorrhizal saprotrophs pathogens at lower proportions sites plus Wildfire positive hydrogen nitrogen recyclers. positively correlated live tree height. These results suggest communities, particular key groups, highly responsive following drought. Thus, legacy past climate conditions such as can important mediating subsequent like

Language: Английский

Citations

10

Microbial consortia-mediated arsenic bioremediation in agricultural soils: Current status, challenges, and solutions DOI

Cengiz Kaya,

Ferhat Uğurlar, Muhammad Ashraf

et al.

The Science of The Total Environment, Journal Year: 2024, Volume and Issue: 917, P. 170297 - 170297

Published: Jan. 23, 2024

Language: Английский

Citations

10

Soil bacterial and fungal diversity and composition respond differently to desertified system restoration DOI Creative Commons
Pan Cheng-chen, Yuan Feng, Yaling Liu

et al.

PLoS ONE, Journal Year: 2025, Volume and Issue: 20(1), P. e0309188 - e0309188

Published: Jan. 6, 2025

Desertification is a major ecological issue worldwide that results in the destruction of terrestrial ecosystems. Restoration desertified ecosystems has been carried out recent decades, but role soil microorganisms this process poorly understood. Thus, to deconstruct effects system restoration on microbial communities, we examined changes characteristics as well variations and drivers diversity community composition Hulun Buir Sandy Land Northeast China, where activities have performed for approximately 30 years. The revealed with restoration, plant species richness aboveground biomass increased significantly. properties, characterized by organic carbon, total nitrogen available content improved. Moreover, pH decreased significantly from 7.75 mobile dunes 7.17 fixed ( P < 0.05). Compared dunes, Chao1 Shannon indices bacteria dunes. In contrast, fungal index (Chao1 index) during restoration. also showed decreasing trend, although it was not significant > Proteobacteria most prevalent bacterial phylum, relative abundance over 40%. abundances Actinobacteria, Acidobacteria, Gemmatimonadetes, Chloroflexi increased, whereas Firmicutes decreased. For fungi, Ascomycota dominant 97.6% compared 82.4% Plant were determinants communities. This research provides important insights into communities their relationships environmental factors which can help guide sustainable land management practices areas.

Language: Английский

Citations

1

Dual role of multistage inoculation in manipulating bacterial community assembly patterns to improve degradation of lignocellulose during rice or corn straw composting DOI
Da Liu, Ziwei Jiang,

Wenxuan Feng

et al.

Chemical Engineering Journal, Journal Year: 2025, Volume and Issue: 505, P. 159283 - 159283

Published: Jan. 9, 2025

Language: Английский

Citations

1

Directed Evolution of Microbial Communities in Fermented Foods: Strategies, Mechanisms, and Challenges DOI Creative Commons

Zihan Yao,

Ting Xie, Huan Deng

et al.

Foods, Journal Year: 2025, Volume and Issue: 14(2), P. 216 - 216

Published: Jan. 12, 2025

Directed Evolution of Microbial Communities (DEMC) offers a promising approach to enhance the functional attributes microbial consortia in fermented foods by mimicking natural selection processes. This review details application DEMC foods, focusing on optimizing community traits improve both fermentation efficiency and sensory quality final products. We outline core techniques used DEMC, including strategic construction initial communities, systematic introduction stress factors induce desirable traits, use artificial cultivate superior communities. Additionally, we explore integration genomic tools dynamic analysis understand guide evolutionary trajectories these While shows substantial potential for refining food products, it faces challenges such as maintaining genetic diversity stability Looking ahead, advanced omics technologies computational modeling is anticipated significantly predictability control evolution By systematically improving management serves crucial tool enhancing consistency directly contributing more robust efficient production systems.

Language: Английский

Citations

1

The response of microbial communities to environmental factors in bank soil and river sediment: A case study along the mainstream of the Yangtze River DOI
Xuchao Zhang, Yuyi Yang, Wenke Yuan

et al.

Environmental Research, Journal Year: 2025, Volume and Issue: unknown, P. 120903 - 120903

Published: Jan. 1, 2025

Language: Английский

Citations

1