Frontiers in Microbiology,
Journal Year:
2018,
Volume and Issue:
9
Published: July 31, 2018
Bacteria
are
the
highest
abundant
microorganisms
in
soil.
To
investigate
bacteria
community
structures,
diversity,
and
functions,
contrasting
them
four
different
seasons
all
year
round
with/within
two
forest
type
soils
of
China.
We
analyzed
soil
bacterial
based
on
16S
rRNA
gene
sequencing
via
Illumina
HiSeq
platform
at
a
temperate
deciduous
broad-leaved
(Baotianman,
BTM)
tropical
rainforest
(Jianfengling,
JFL).
obtained
51,137
operational
taxonomic
units
(OTUs)
classified
into
44
phyla
556
known
genera,
18.2%
which
had
relative
abundance
>1%.
The
composition
each
phylum
was
similar
between
sites.
Proteobacteria
Acidobacteria
were
most
samples
Shannon
index
did
not
significantly
differ
among
BTM
or
JFL
higher
than
season.
both
showed
significant
(P
<
0.05)
predicted
functions
related
to
carbon
cycle
(anoxygenic
photoautotrophy
sulfur
oxidizing
anoxygenic
photoautotrophy)
three
nitrogen
(nitrous
denitrificaton,
nitrite
denitrification,
nitrous
oxide
denitrification).
provide
basis
how
changes
diversity
leading
differences
cycles
forests.
FEMS Microbiology Reviews,
Journal Year:
2018,
Volume and Issue:
42(3), P. 335 - 352
Published: Feb. 16, 2018
Fungi
and
bacteria
are
found
living
together
in
a
wide
variety
of
environments.
Their
interactions
significant
drivers
many
ecosystem
functions
important
for
the
health
plants
animals.
A
large
number
fungal
bacterial
families
engage
complex
that
lead
to
critical
behavioural
shifts
microorganisms
ranging
from
mutualism
antagonism.
The
importance
bacterial-fungal
(BFI)
environmental
science,
medicine
biotechnology
has
led
emergence
dynamic
multidisciplinary
research
field
combines
highly
diverse
approaches
including
molecular
biology,
genomics,
geochemistry,
chemical
microbial
ecology,
biophysics
ecological
modelling.
In
this
review,
we
discuss
recent
advances
underscore
roles
BFI
across
relevant
habitats
ecosystems.
particular
focus
is
placed
on
understanding
within
communities
regard
metaorganism
concept.
We
also
discoveries
clarify
(molecular)
mechanisms
involved
relationships,
contribution
new
technologies
decipher
generic
principles
terms
physical
associations
dialogues.
Finally,
future
directions
order
stimulate
synergy
area
resolve
outstanding
questions.
Environmental Microbiology Reports,
Journal Year:
2017,
Volume and Issue:
9(6), P. 679 - 705
Published: Oct. 20, 2017
Lignin
is
the
most
abundant
phenolic
polymer;
thus,
its
decomposition
by
microorganisms
fundamental
to
carbon
cycling
on
earth.
breakdown
initiated
depolymerization
catalysed
extracellular
oxidoreductases
secreted
white-rot
basidiomycetous
fungi.
On
other
hand,
bacteria
play
a
predominant
role
in
mineralization
of
lignin-derived
heterogeneous
low-molecular-weight
aromatic
compounds.
The
outline
bacterial
catabolic
pathways
for
bi-
and
monoaryls
are
typically
composed
following
sequential
steps:
(i)
funnelling
wide
variety
aromatics
into
vanillate
syringate,
(ii)
O
demethylation
syringate
form
catecholic
derivatives
(iii)
ring-cleavage
produce
tricarboxylic
acid
cycle
intermediates.
Knowledge
regarding
systems
compounds
not
only
important
understanding
terrestrial
but
also
valuable
promoting
shift
low-carbon
economy
via
biological
lignin
valorisation.
This
review
summarizes
recent
progress
compounds,
including
newly
identified
genes
biaryls,
transcriptional
regulation
substrate
uptake
systems.
Recent
omics
approaches
catabolism
described.
Annual Review of Environment and Resources,
Journal Year:
2020,
Volume and Issue:
45(1), P. 29 - 59
Published: June 2, 2020
Communities
of
soil
microorganisms
(soil
microbiomes)
play
a
major
role
in
biogeochemical
cycles
and
support
plant
growth.
Here
we
focus
primarily
on
the
roles
that
microbiome
plays
cycling
organic
carbon
impact
climate
change
cycle.
We
first
discuss
current
challenges
understanding
carried
out
by
highly
diverse
heterogeneous
microbiomes
review
existing
knowledge
gaps
how
will
microbiome.
Because
stability
is
key
metric
to
understand
as
changes,
different
aspects
stability,
including
resistance,
resilience,
functional
redundancy.We
then
recent
research
pertaining
perturbations
functions
they
carry
out.
Finally,
new
experimental
methodologies
modeling
approaches
under
development
should
facilitate
our
complex
nature
better
predict
its
future
responses
change.
