Decreased spatial variation and deterministic processes of bacterial community assembly in the rhizosphere of Phragmites australis across the Middle–Lower Yangtze plain DOI
Rujia He, Jin Zeng, Dayong Zhao

et al.

Molecular Ecology, Journal Year: 2021, Volume and Issue: 31(4), P. 1180 - 1195

Published: Nov. 30, 2021

Comparison of the spatial distribution and assembly processes between bulk rhizosphere bacterial communities at multiple scales is vital for understanding generation maintenance microbial diversity under influence plants. However, biogeographical patterns underlying mechanisms in sediments aquatic ecosystems remain unclear. Here, we collected 140 sediment samples Phragmites australis from 14 lakeshore zones across a 510-km transect Middle-Lower Yangtze plain. We performed high-throughput sequencing to investigate diversity, composition, these samples. Bacterial exhibited higher alpha but lower beta than those sediment. Both had significant distance-decay relationships, turnover community was strikingly that Despite variable selection dominating sediment, P. enhanced role dispersal limitation governing communities. The relative importance different ecological determining presented distinct increasing or decreasing linearly with an increase scale. This investigation highlights convergent plant surrounding emphasizes on environments over scales. Furthermore, provide preliminary framework exploring scale dependence ecosystems.

Language: Английский

Integrating remote sensing with ecology and evolution to advance biodiversity conservation DOI
Jeannine Cavender‐Bares, Fabian Schneider, Maria J. Santos

et al.

Nature Ecology & Evolution, Journal Year: 2022, Volume and Issue: 6(5), P. 506 - 519

Published: March 24, 2022

Language: Английский

Citations

189

Linking Bacterial-Fungal Relationships to Microbial Diversity and Soil Nutrient Cycling DOI Creative Commons
Shuo Jiao, Ziheng Peng, Jiejun Qi

et al.

mSystems, Journal Year: 2021, Volume and Issue: 6(2)

Published: March 23, 2021

The relationships between soil biodiversity and ecosystem functions are an important yet poorly understood topic in microbial ecology. This study presents exploratory effort to gain predictive understanding of the factors driving diversity potential nutrient cycling complex terrestrial ecosystems.

Language: Английский

Citations

166

Soil enzymes in response to climate warming: Mechanisms and feedbacks DOI
Nicolas Fanin, Maria Mooshammer, Marie Sauvadet

et al.

Functional Ecology, Journal Year: 2022, Volume and Issue: 36(6), P. 1378 - 1395

Published: Feb. 21, 2022

Abstract Soil enzymes are central to ecosystem processes because they mediate numerous reactions that essential in biogeochemical cycles. However, how soil enzyme activities will respond global warming is uncertain. We reviewed the literature on mechanisms linking temperature effects and microbial communities, outlined a conceptual overview these changes may influence carbon fluxes terrestrial ecosystems. At scale, although can have positive effect enzymatic catalytic power short term (i.e. via instantaneous response of activity), this be countered over time by inactivation reduced substrate affinity. short‐term increase accelerated synthesis turnover, but shifts community composition growth efficiency long term. Although increasing accelerate labile decomposition months years, our review highlights initial stage followed following phases: (a) reduction loss, due changing use among communities or depletion, which together decrease biomass activity (b) an acceleration structure greater allocation oxidative for recalcitrant degradation. Studies bridge scales space required assess whether there attenuation loss through very conclude determine sensitivity warming, traits change time. Improving representation models requires long‐term studies characterize wide‐ranging hydrolytic traits—catalytic power, kinetics, inactivation—and responses govern synthesis. Read free Plain Language Summary article Journal blog.

Language: Английский

Citations

102

Drivers and trends of global soil microbial carbon over two decades DOI Creative Commons
Guillaume Patoine, Nico Eisenhauer, Simone Cesarz

et al.

Nature Communications, Journal Year: 2022, Volume and Issue: 13(1)

Published: July 20, 2022

Abstract Soil microorganisms are central to sustain soil functions and services, like carbon nutrient cycling. Currently, we only have a limited understanding of the spatial-temporal dynamics microorganisms, restricting our ability assess long-term effects climate land-cover change on microbial roles in biogeochemistry. This study assesses temporal trends biomass identifies main drivers regionally globally detect areas sensitive these environmental factors. Here, combined global data set, random forest modelling, layers predict stocks from 1992 2013. decreased by 3.4 ± 3.0% (mean 95% CI) between 2013 for predictable regions, equivalent 149 Mt being lost over period, or ~1‰ C. Northern with high experienced strongest decrease, mostly driven increasing temperatures. In contrast, was weaker driver carbon, but had, some cases, important regional effects.

Language: Английский

Citations

77

The vertical distribution and control factor of microbial biomass and bacterial community at macroecological scales DOI

Libing He,

Xiangyang Sun, Suyan Li

et al.

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 869, P. 161754 - 161754

Published: Jan. 26, 2023

Language: Английский

Citations

53

Positive associations fuel soil biodiversity and ecological networks worldwide DOI Creative Commons
Xu Liu, Haiyan Chu, Óscar Godoy

et al.

Proceedings of the National Academy of Sciences, Journal Year: 2024, Volume and Issue: 121(6)

Published: Jan. 29, 2024

Microbial interactions are key to maintaining soil biodiversity. However, whether negative or positive associations govern the microbial system at a global scale remains virtually unknown, limiting our understanding of how microbes interact support biodiversity and functions. Here, we explored ecological networks among multitrophic organisms involving bacteria, protists, fungi, invertebrates in survey across 20 regions planet found that both pairs triads taxa governed networks. We further revealed with greater levels supported larger resulted lower network fragility withstand potential perturbations species losses. Our study provides unique evidence widespread between their crucial role structure worldwide.

Language: Английский

Citations

24

Linking phylogenetic niche conservatism to soil archaeal biogeography, community assembly and species coexistence DOI
Shuo Jiao, Weimin Chen, Gehong Wei

et al.

Global Ecology and Biogeography, Journal Year: 2021, Volume and Issue: 30(7), P. 1488 - 1501

Published: May 19, 2021

Abstract Aim A predictive understanding of the mechanisms underlying microbial biogeographical patterns is great interest, particularly with respect to phylogenetic distributions their ecological adaptations. Here, we test whether information can predict distributions, community assembly and species co‐occurrence soil archaea. Location Northern China. Time period July August 2017. Major taxa studied Archaeal communities. Methods By conducting a large‐scale (transect intervals 1,257.6 km) study across agricultural field, forest, wetland, grassland desert biomes, applied framework niche conservatism investigate archaeal biogeography, network topology. We examined signal based on Blomberg's K environmental preference given taxon was related phylogeny, corresponding degree for niches complex gradients. evaluated processes communities null model Sloan neutral analyses. then explored major factors that influenced coexistence Results Soil exhibited strong climate‐related preferences. Mean annual precipitation (MAP) had strongest signal, this mediated both coexistence, stronger deterministic less in environments lower precipitation. Phylogenetic diversity closely linked balance processes; is, stochastic were dominant low‐diversity communities, whereas variable selection promoted high diversity. Main conclusions conclude archaea drives distributions. Our findings represent considerable advance linking therefore forecasting evolutionary adaptations response ongoing changes.

Language: Английский

Citations

77

Defining the wheat microbiome: Towards microbiome-facilitated crop production DOI Creative Commons
Vanessa Nessner Kavamura, Rodrigo Mendes, Adnane Bargaz

et al.

Computational and Structural Biotechnology Journal, Journal Year: 2021, Volume and Issue: 19, P. 1200 - 1213

Published: Jan. 1, 2021

Wheat is one of the world's most important crops, but its production relies heavily on agrochemical inputs which can be harmful to environment when used excessively. It well known that a multitude microbes interact with eukaryotic organisms, including plants, and sum their functions associated given host termed microbiome. Plant-microbe interactions beneficial, neutral or plant. Over last decade, development next generation DNA sequencing technology, our understanding plant microbiome structure has dramatically increased. Considering defining wheat key leverage crop in sustainable way, here we describe how different factors drive assembly wheat, management, edaphic-environmental conditions selection. In addition, highlight benefits take multidisciplinary approach define explore core generate solutions based microbial (synthetic) communities single inoculants. Advances research will facilitate strategies guarantee intensification production.

Language: Английский

Citations

72

Abundant fungal and rare bacterial taxa jointly reveal soil nutrient cycling and multifunctionality in uneven-aged mixed plantations DOI Creative Commons
Xu Haidong, Mukui Yu, Xiangrong Cheng

et al.

Ecological Indicators, Journal Year: 2021, Volume and Issue: 129, P. 107932 - 107932

Published: June 28, 2021

Uneven-aged silvicultural practices can maintain habitat continuity and enhance biodiversity. Soil microorganisms play critical roles in multiple ecosystem functions (i.e., multifunctionality). However, little is currently known regarding the role of microbial community driving soil nutrient cycling multifunctionality (SMF) uneven-aged mixed plantations. In this study, we investigated bacterial fungal compositions diversities, single-function related carbon (C), nitrogen (N), phosphorus (P) cycling, SMF indices monoculture plantation (as a control) three stands (4, 7, 11 years old). Our results demonstrated that C, N, P plantations increased by 17.9–55.2%, 20.0–54.0%, 0.7–21.6%, 16.3–30.1% compared to plantation. The alpha diversity (richness Shannon diversity), significantly improved with stand age, but showed less variation. beta diversities bacteria fungi notable variation age were predominantly affected properties (soil organic total P, C/N ratio), respectively. Additionally, temporal turnover within was higher than rates community. biomass more sensitive structure change over short period (11 years) biomass. Furthermore, fungi/bacteria (F/B) ratio strongly positively correlated SMF. Most importantly, abundant taxa (e.g., Mucoromycota Mortierellomycota) major drivers SMF, followed rare Nitrospirae Elusimicrobia). These findings indicate communities have different responses undertake important maintaining when converted into an

Language: Английский

Citations

67

Continental-scale insights into the soil microbial co-occurrence networks of Australia and their environmental drivers DOI
Heng Gui, Martin F. Breed, Yan Li

et al.

Soil Biology and Biochemistry, Journal Year: 2023, Volume and Issue: 186, P. 109177 - 109177

Published: Sept. 9, 2023

Language: Английский

Citations

32