The rhizosphere and root selections intensify fungi-bacteria interaction in abiotic stress-resistant plants DOI Creative Commons
Feng Huang,

Mengying Lei,

Wen Li

et al.

PeerJ, Journal Year: 2024, Volume and Issue: 12, P. e17225 - e17225

Published: April 15, 2024

The microbial communities, inhabiting around and in plant roots, are largely influenced by the compartment effect, turn, promote growth stress resistance of plant. However, how soil microbes selected to rhizosphere, further into roots is still not well understood. Here, we profiled fungal, bacterial communities their interactions bulk soils, rhizosphere soils eleven stress-resistant species after six months growth. results showed that root selection (from roots) was stronger than soils) in: (1) filtering stricter on fungal (28.5% 40.1%) (48.9% 68.1%) amplicon sequence variants (ASVs), (2) depleting more shared (290 56) (691 2) ASVs measured relative abundance, (3) increasing significant fungi-bacteria crosskingdom correlations (142 110). In addition, selection, but significantly increased fungi bacteria ratios (f:b) observed shannon diversity index, indicating unbalanced effects exerted selection. Based network analysis, were associated with numbers negative interaction (140 99) (123 92), suggesting intensifies roots. Our findings provide insights complexity improve understanding microbiome assembly

Language: Английский

MicroNet-MIMRF: A Microbial Network Inference Approach Based on Mutual Information and Markov Random Fields DOI Creative Commons
Chenqionglu Feng, Huiqun Jia, Hui Wang

et al.

Bioinformatics Advances, Journal Year: 2024, Volume and Issue: 4(1)

Published: Jan. 1, 2024

The human microbiome, comprises complex associations and communication networks among microbial communities, which are crucial for maintaining health. construction of is vital elucidating these associations. However, existing inference methods cannot solve the issues zero-inflation non-linear Therefore, necessitating novel to improve accuracy inference.

Language: Английский

Citations

1
The rhizosphere and root selections intensify fungi-bacteria interaction in abiotic stress-resistant plants DOI Creative Commons
Feng Huang,

Mengying Lei,

Wen Li

et al.

PeerJ, Journal Year: 2024, Volume and Issue: 12, P. e17225 - e17225

Published: April 15, 2024

The microbial communities, inhabiting around and in plant roots, are largely influenced by the compartment effect, turn, promote growth stress resistance of plant. However, how soil microbes selected to rhizosphere, further into roots is still not well understood. Here, we profiled fungal, bacterial communities their interactions bulk soils, rhizosphere soils eleven stress-resistant species after six months growth. results showed that root selection (from roots) was stronger than soils) in: (1) filtering stricter on fungal (28.5% 40.1%) (48.9% 68.1%) amplicon sequence variants (ASVs), (2) depleting more shared (290 56) (691 2) ASVs measured relative abundance, (3) increasing significant fungi-bacteria crosskingdom correlations (142 110). In addition, selection, but significantly increased fungi bacteria ratios (f:b) observed shannon diversity index, indicating unbalanced effects exerted selection. Based network analysis, were associated with numbers negative interaction (140 99) (123 92), suggesting intensifies roots. Our findings provide insights complexity improve understanding microbiome assembly

Language: Английский

Citations

0