Chromosome-level genome assembly and annotation of the camouflage grouper (Epinephelus polyphekadion) DOI Creative Commons
H. Li,

Yiqun Liu,

Ming‐Guang Mao

et al.

Scientific Data, Journal Year: 2024, Volume and Issue: 11(1)

Published: Dec. 18, 2024

The camouflage grouper (Epinephelus polyphekadion) is an economically carnivorous fish widely distributed in the Indo-Pacific. However, no valid reference genome of E. polyphekadion severely hinders further research on biology and genomic breeding programs. Here, we presented a high-quality chromosome-level assembly using PacBio sequencing Hi-C technologies. has total length 1.1 Gb with contig N50 40.8 Mb. Approximately 99.4% lengths were anchored to 24 pseudochromosomes. In total, 25,165 protein-coding genes predicted, among which 24,634 (97.9%) functionally annotated. completeness was estimated be 99.1% BUSCO. summary, first this study will not only provide pivotal genetic resources for biological evolutionary studies groupers, but also benefit development hybridization artificial industry.

Language: Английский

Review on Gilthead Seabream (Sparus aurata) Aquaculture: Life Cycle, Growth, Aquaculture Practices and Challenges DOI Creative Commons
Kamel Mhalhel, Maria Levanti, Francesco Abbate

et al.

Journal of Marine Science and Engineering, Journal Year: 2023, Volume and Issue: 11(10), P. 2008 - 2008

Published: Oct. 18, 2023

Over the years, gilthead seabream (Sparus aurata), a prominent species in Mediterranean aquaculture with an increasing production volume and aquafarming technologies, has become important research focus. The accumulation of knowledge via several studies during past decades on their functional biological characteristics significantly improved aquacultural aspects, namely reproductive success, survival, growth. Despite remarkable progress industry, hatchery conditions are still far from ideal, resulting frequent challenges at beginning intensive culture, entailing significant economic losses. Given its importance persistent faced practices, thorough review is essential to consolidate knowledge, elucidate intricate facets concerning distribution, life cycle, growth dynamics, genetics, methodologies, dimensions, inherent cultivation.

Language: Английский

Citations

15
Development and validation of a 40 K liquid SNP array for the mud crab (Scylla paramamosain) DOI
Shaopan Ye,

Xiyi Zhou,

Min Ouyang

et al.

Aquaculture, Journal Year: 2024, Volume and Issue: 594, P. 741394 - 741394

Published: July 28, 2024

Language: Английский

Citations

1
Breeding evaluations in aquaculture using neural networks DOI Creative Commons
Christos Palaiokostas

Aquaculture Reports, Journal Year: 2024, Volume and Issue: 39, P. 102468 - 102468

Published: Nov. 15, 2024

Language: Английский

Citations

1
Development and Validation of a 40 K Liquid Snp Array for the Mud Crab (Scylla Paramamosain) DOI
Shaopan Ye,

Xiyi Zhou,

Min Ouyang

et al.

Published: Jan. 1, 2024

Download This Paper Open PDF in Browser Add to My Library Share: Permalink Using these links will ensure access this page indefinitely Copy URL DOI

Language: Английский

Citations

0
Chromosome-level genome assembly and annotation of the camouflage grouper (Epinephelus polyphekadion) DOI Creative Commons
H. Li,

Yiqun Liu,

Ming‐Guang Mao

et al.

Scientific Data, Journal Year: 2024, Volume and Issue: 11(1)

Published: Dec. 18, 2024

The camouflage grouper (Epinephelus polyphekadion) is an economically carnivorous fish widely distributed in the Indo-Pacific. However, no valid reference genome of E. polyphekadion severely hinders further research on biology and genomic breeding programs. Here, we presented a high-quality chromosome-level assembly using PacBio sequencing Hi-C technologies. has total length 1.1 Gb with contig N50 40.8 Mb. Approximately 99.4% lengths were anchored to 24 pseudochromosomes. In total, 25,165 protein-coding genes predicted, among which 24,634 (97.9%) functionally annotated. completeness was estimated be 99.1% BUSCO. summary, first this study will not only provide pivotal genetic resources for biological evolutionary studies groupers, but also benefit development hybridization artificial industry.

Language: Английский

Citations

0