Draft genomes of three closely related low light-adapted Prochlorococcus DOI Creative Commons

Jessie W Berta-Thompson,

Elaina Thomas,

Andrés Cubillos-Ruiz

et al.

BMC Genomic Data, Journal Year: 2023, Volume and Issue: 24(1)

Published: Feb. 24, 2023

Abstract Objectives The marine cyanobacterium Prochlorococcus is a critical part of warm ocean ecosystems and model for studying microbial evolution ecology. To expand the representation this organism’s vast wild diversity in sequence collections, we performed set isolation efforts targeting low light-adapted . Three genomes resulting from larger body work are described here. Data description We present draft-quality enrichment cultures P1344, P1361, P1363, sampled North Pacific. were built Illumina paired reads assembled de novo. Supporting datasets raw reads, assessments, sequences co-enriched heterotrophic bacteria also provided. These three represent members LLIV clade that closely related, with 99.9% average nucleotide identity between pairs, yet vary gene content. Expanding powerful toolkit genomes, these provide an opportunity to study fine-scale variation microevolutionary processes.

Language: Английский

Genomes of Prochlorococcus, Synechococcus, bacteria, and viruses recovered from marine picocyanobacteria cultures based on Illumina and Qitan nanopore sequencing DOI Creative Commons
Qingtao Wu, Jie Gao,

Boxuan Sa

et al.

Scientific Data, Journal Year: 2025, Volume and Issue: 12(1)

Published: April 12, 2025

Prochlorococcus and Synechococcus are key contributors to marine primary production play essential roles in global biogeochemical cycles. Despite the ecological importance of these two picocyanobacterial genera, current genomic datasets still lack comprehensive representation under-sampled ocean regions, associated bacteria viruses. To address this gap, we used a combination second- third-generation sequencing technologies assemble data from 105 Picocyanobacterial enrichment cultures isolated Indian Ocean, South China Sea, western Pacific Ocean. This dataset includes 55 50 genomes with high completeness (>98%) low contamination (<2%), along 308 non-redundant bacterial derived 1,457 medium- high-quality non-cyanobacteria metagenome-assembled (MAGs, ≥50% ≤10%). Additionally, 2,113 viral operational taxonomic units (vOTUs) were total 7632 qualified contigs. provides valuable resource for improving our understanding complex interactions among Prochlorococcus, Synechococcus, their viruses ecosystems, offering foundation study evolutionary dynamics.

Language: Английский

Citations

0
Biotechnological Applications of Cyanobacteria: Synechocystis and Synechococcus Strains DOI
Paul Bolay, Jörg Toepel, Bruno Bühler

et al.

Advances in biochemical engineering, biotechnology, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

Language: Английский

Citations

0
Draft genomes of three closely related low light-adapted Prochlorococcus DOI Creative Commons

Jessie W Berta-Thompson,

Elaina Thomas,

Andrés Cubillos-Ruiz

et al.

BMC Genomic Data, Journal Year: 2023, Volume and Issue: 24(1)

Published: Feb. 24, 2023

Abstract Objectives The marine cyanobacterium Prochlorococcus is a critical part of warm ocean ecosystems and model for studying microbial evolution ecology. To expand the representation this organism’s vast wild diversity in sequence collections, we performed set isolation efforts targeting low light-adapted . Three genomes resulting from larger body work are described here. Data description We present draft-quality enrichment cultures P1344, P1361, P1363, sampled North Pacific. were built Illumina paired reads assembled de novo. Supporting datasets raw reads, assessments, sequences co-enriched heterotrophic bacteria also provided. These three represent members LLIV clade that closely related, with 99.9% average nucleotide identity between pairs, yet vary gene content. Expanding powerful toolkit genomes, these provide an opportunity to study fine-scale variation microevolutionary processes.

Language: Английский

Citations

3