bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Aug. 26, 2023
Abstract
Studies
of
sex
chromosome
dosage
compensation
have
historically
focussed
on
therian
mammals
which
a
conserved
XY
determination
system.
In
contrast,
lizards
systems
that
can
differ
between
even
closely
related
species
include
and
ZW
thermolabile
where
genetic
temperature
interact
to
various
degrees
determine
sex.
The
eastern
three-lined
skink
(
Bassiana
duperreyi
)
has
differentiated
system,
in
low
incubation
during
development
cause
female
male
reversal,
producing
XX
males.
This
provides
unique
opportunity
investigate
how
genotype
phenotype
affect
compensation.
We
generated
transcriptomes
from
brain
heart
tissue
normal
adult
males
females,
along
with
sex-reversed
observed
partial
females
both
heart,
median
gene
expression
the
X
being
0.7
times
females.
Surprisingly,
reversed
output
did
not
match
either
or
but
instead
was
0.89
level.
suggests
just
genotype,
also
sexual
phenotype,
influences
chromosome.
profound
implications
for
our
understanding
evolution
Sexual Development,
Journal Year:
2021,
Volume and Issue:
15(1-3), P. 148 - 156
Published: Jan. 1, 2021
Sex
reversal
is
the
process
by
which
an
individual
develops
a
phenotypic
sex
that
discordant
with
its
chromosomal
or
genotypic
sex.
It
occurs
in
many
lineages
of
ectothermic
vertebrates,
such
as
fish,
amphibians,
and
at
least
one
agamid
scincid
reptile
species.
usually
triggered
environmental
cue
alters
genetically
determined
sexual
differentiation,
but
it
can
also
be
caused
exposure
to
exogenous
chemicals,
hormones,
pollutants.
Despite
occurrence
both
temperature-dependent
determination
(TSD)
genetic
(GSD)
broadly
among
reptiles,
only
2
species
squamates
have
thus
far
been
demonstrated
possess
nature
(GSD
overriding
thermal
influence).
The
lack
unambiguously
identified
not
necessarily
reflection
low
incidence
this
trait
reptiles.
Indeed,
may
relatively
common
little
known
prevalence,
mechanisms
occurs,
consequences
for
wild
under
changing
climate.
In
review,
we
present
roadmap
discovery
outlining
various
techniques
allow
new
occurrences
identified,
molecular
involved
how
identify
them,
approaches
assessing
impacts
populations.
We
discuss
evolutionary
implications
use
central
bearded
dragon
(Pogona
vitticeps)
eastern
three-lined
skink
(Bassiana
duperreyi)
examples
opposing
patterns
impacted
differently
our
rapidly
Ultimately,
review
serves
highlight
importance
understanding
laboratory
populations
proposes
practical
solutions
foster
future
research.
Genes,
Journal Year:
2021,
Volume and Issue:
12(9), P. 1341 - 1341
Published: Aug. 28, 2021
Lizards
represent
unique
model
organisms
in
the
study
of
sex
determination
and
chromosome
evolution.
Among
tetrapods,
they
are
characterized
by
an
unparalleled
diversity
systems,
including
temperature-dependent
(TSD)
genetic
(GSD)
under
either
male
or
female
heterogamety.
Sex
systems
also
extremely
variable
lizards.
They
include
simple
(XY
ZW)
multiple
(X1X2Y
Z1Z2W)
encompass
all
different
hypothesized
stages
diversification
heterogametic
chromosomes,
from
homomorphic
to
heteromorphic
completely
heterochromatic
chromosomes.
The
co-occurrence
TSD,
GSD
characterizes
lizard
taxa,
which
ideal
models
emergence
evolutionary
drivers
reversal
turnover.
In
this
review,
we
present
a
synthesis
general
genome
karyotype
features
non-snakes
squamates
discuss
main
theories
evidences
on
evolution
their
systems.
We
here
provide
systematic
assessment
available
data
overview
cytogenetic
molecular
methods
used
for
identification,
using
qualitative
quantitative
approach.
Proceedings of the National Academy of Sciences,
Journal Year:
2022,
Volume and Issue:
119(4)
Published: Jan. 24, 2022
Significance
Reptiles
have
an
extraordinary
variety
of
mechanisms
to
determine
sex.
The
best
candidate
sex-determining
gene
in
our
model
reptile
(the
Australian
central
bearded
dragon)
is
the
key
vertebrate
sex
nr5a1
(coding
for
steroidogenic
factor
1).
There
are
no
sex-specific
sequence
differences
between
alleles
on
chromosomes,
but
Z-
and
W-borne
transcribed
into
remarkably
different
alternative
transcripts.
We
propose
that
altered
configuration
repeat-laden
W
chromosome
affects
conformation
primary
transcript
generate
more
diverse
potentially
inhibitory
isoforms
suppress
testis
determination.
This
a
mechanism
determination,
which
epigenetic
control
regulates
action
present
both
chromosomes.
Heredity,
Journal Year:
2021,
Volume and Issue:
126(5), P. 805 - 816
Published: Feb. 1, 2021
The
view
that
has
genotypic
sex
determination
and
environmental
as
mutually
exclusive
states
in
fishes
reptiles
been
contradicted
by
the
discovery
chromosomal
influences
can
co-exist
within
same
species,
hinting
at
a
continuum
of
intermediate
states.
Systems
where
genes
environment
interact
to
determine
present
opportunity
for
reversal
occur,
phenotypic
is
opposite
predicted
their
chromosome
complement.
skink
Bassiana
duperreyi
XX/XY
chromosomes
with
XX
genotype
male
phenotype,
laboratory
experiments,
field
nests,
response
exposure
cold
incubation
temperatures.
Here
we
studied
frequency
adult
populations
B.
climatic
variation,
using
elevation
surrogate
We
demonstrate
wild
first
time
adults
reptile
species
determination.
highest
occurred
coolest
location,
Mt
Ginini
(18.46%)
decreased
zero
decreasing
elevation.
model
impact
this
under
Fisher's
frequency-dependent
selection
show
that,
elevations,
risk
loss
Y
transition
temperature-dependent
This
study
contributes
our
understanding
risks
extinction
from
climate
change
subject
temperature,
will
provide
focus
future
research
test
on-the-ground
management
strategies
mitigate
effects
local
populations.
BioEssays,
Journal Year:
2021,
Volume and Issue:
43(5)
Published: Feb. 16, 2021
Abstract
Sex
allocation
research
has
primarily
focused
on
offspring
sex‐ratio
adjustment
by
mothers.
Yet,
fathers
also
benefit
from
producing
more
of
the
sex
with
greater
fitness
returns.
Here,
we
review
state‐of‐the
art
in
study
male‐driven
and,
counter
to
current
paradigm,
propose
that
males
can
adaptively
influence
ratio
through
a
wide
variety
mechanisms.
This
includes
differential
production
and
motility
X‐
versus
Y‐bearing
sperms
mammals,
variation
seminal
fluid
composition
haplo‐diploid
invertebrates,
epigenetic
mechanisms
some
fish
lizards
exhibiting
environmental
determination.
Conflicts
interest
between
mothers
over
ratios
emerge,
although
many
studies
are
needed
this
area.
While
have
adaptive
explanations
little
attention
mechanisms,
vice
versa,
integration
these
two
topics
is
essential
for
understanding
allocation.
Molecular Ecology Resources,
Journal Year:
2023,
Volume and Issue:
unknown
Published: March 6, 2023
Genomics
can
play
important
roles
in
biodiversity
conservation,
especially
for
Extinct-in-the-Wild
species
where
genetic
factors
greatly
influence
risk
of
total
extinction
and
probability
successful
reintroductions.
The
Christmas
Island
blue-tailed
skink
(Cryptoblepharus
egeriae)
Lister's
gecko
(Lepidodactylus
listeri)
are
two
endemic
reptile
that
went
extinct
the
wild
shortly
after
introduction
a
predatory
snake.
After
decade
management,
captive
populations
have
expanded
from
66
skinks
43
geckos
to
several
thousand
individuals;
however,
little
is
known
about
patterns
variation
these
species.
Here,
we
use
PacBio
HiFi
long-read
Hi-C
sequencing
generate
highly
contiguous
reference
genomes
both
reptiles,
including
XY
chromosome
pair
skink.
We
then
analyse
diversity
infer
ancient
demography
more
recent
histories
inbreeding.
observe
high
genome-wide
heterozygosity
(0.007
heterozygous
sites
per
base-pair)
(0.005),
consistent
with
large
historical
population
sizes.
However,
nearly
10%
genome
falls
within
long
(>1
Mb)
runs
homozygosity
(ROH),
resulting
at
all
major
histocompatibility
complex
(MHC)
loci.
In
contrast,
detect
single
ROH
gecko.
lengths
related
may
established
populations.
Despite
shared
wild,
our
results
suggest
differences
species'
implications
management.
show
how
contribute
evolutionary
conservation
insights,
provide
resources
future
population-level
comparative
genomic
studies
reptiles.
Genes,
Journal Year:
2021,
Volume and Issue:
12(11), P. 1822 - 1822
Published: Nov. 19, 2021
Among
tetrapods,
the
well
differentiated
heteromorphic
sex
chromosomes
of
birds
and
mammals
have
been
highly
investigated
their
master
sex-determining
(MSD)
gene,
Dmrt1
SRY,
respectively,
identified.
The
homomorphic
reptiles
least
studied,
but
gap
with
has
begun
to
fill.
This
review
describes
our
current
knowledge
reptilian
at
cytogenetic
molecular
level.
Most
it
arose
recently
from
various
studies
comparing
male
female
gene
content.
includes
restriction
site-associated
DNA
sequencing
(RAD-Seq)
experiments
in
several
samples,
RNA
identification
Z-
or
X-linked
genes
by
male/female
comparative
transcriptome
coverage,
transcriptomic
transcriptome/genome
substraction
approaches
allowing
Y-
W-linked
transcripts.
A
few
putative
proposed,
none
demonstrated
yet.
Lastly,
future
directions
field
MSD
are
considered.
Australian Journal of Zoology,
Journal Year:
2021,
Volume and Issue:
68(4), P. 168 - 199
Published: Sept. 28, 2021
Australian
lizards
are
a
diverse
group
distributed
across
the
continent
and
inhabiting
wide
range
of
environments.
Together,
they
exhibit
remarkable
diversity
reproductive
morphologies,
physiologies,
behaviours
that
is
broadly
representative
vertebrates
in
general.
Many
traits
exhibited
by
have
evolved
independently
multiple
lizard
lineages,
including
sociality,
complex
signalling
mating
systems,
viviparity,
temperature-dependent
sex
determination.
thus
outstanding
model
organisms
for
testing
hypotheses
about
how
function
evolve,
provide
an
important
basis
comparison
with
other
animals
similar
traits.
We
review
research
on
reproduction
has
contributed
to
answering
broader
evolutionary
ecological
questions
apply
focus
traits,
processes,
strategies
areas
current
research,
involved
courtship;
mechanisms
mating,
egg
production,
sperm
competition;
nesting
gestation;
determination;
finally,
birth
viviparous
species.
use
our
identify
emerge
from
understanding
this
body
when
considered
holistically.
Finally,
we
additional
within
each
topic
well
suited
biologists
address.
Genome Biology and Evolution,
Journal Year:
2024,
Volume and Issue:
16(4)
Published: March 25, 2024
Abstract
To
understand
the
biology
of
a
species,
it
is
often
crucial
to
be
able
differentiate
males
and
females.
However,
many
species
lack
easily
identifiable
sexually
dimorphic
traits.
In
those
that
possess
sex
chromosomes,
molecular
sexing
offers
good
alternative,
assays
can
developed
through
comparison
male
female
genomic
sequences.
in
nonmodel
chromosomes
are
poorly
differentiated,
identifying
sex-linked
sequences
developing
challenging.
this
study,
we
highlight
simple
transcriptome-based
procedure
for
detection
markers
suitable
development
circumvents
limitations
more
commonly
used
approaches.
We
apply
spotted
snow
skink
Carinascincus
ocellatus,
viviparous
lizard
with
homomorphic
XY
has
environmentally
induced
reversal.
With
transcriptomes
from
three
females
alone,
identify
thousands
putative
Y-linked
confirm
linkage
alignment
assembled
transcripts
distantly
related
genome
readily
design
multiple
single
locus
polymerase
chain
reaction
primers
C.
ocellatus
species.
Our
approach
also
facilitates
valuable
comparisons
determining
systems
on
broad
taxonomic
scale.
Ecology and Evolution,
Journal Year:
2022,
Volume and Issue:
12(3)
Published: March 1, 2022
Abstract
Much
attention
is
paid
in
conservation
planning
to
the
concept
of
a
species,
ensure
comparability
across
studies
and
regions
when
classifying
taxa
against
criteria
endangerment
setting
priorities
for
action.
However,
various
jurisdictions
now
allow
taxonomic
ranks
below
level
species
nontaxonomic
intraspecific
divisions
be
factored
into
planning—subspecies,
key
populations,
evolutionarily
significant
units,
or
designatable
units.
Understanding
patterns
genetic
diversity
its
distribution
landscape
component
identification
boundaries
determination
substantial
geographic
structure
within
species.
A
total
12,532
reliable
polymorphic
SNP
loci
were
generated
from
63
populations
(286
individuals)
covering
Australian
eastern
three‐lined
skink,
Bassiana
duperreyi
,
assess
population
form
diagnosable
lineages
their
landscape,
with
particular
reference
recent
catastrophic
bushfires
Australia.
Five
well‐supported
operational
units
(OTUs)
existed
B
.
Low
levels
divergence
between
mainland
Australia
Tasmania
(no
fixed
allelic
differences)
support
notion
episodic
exchange
alleles
Bass
Strait
(
ca
60
m,
25
Kya)
during
periods
low
sea
Upper
Pleistocene
rather
than
much
longer
period
isolation
(1.7
My)
indicated
by
earlier
using
mitochondrial
sequence
variation.
Our
study
provides
foundational
work
detailed
re‐evaluation
this
complex
need
biodiversity
assessment
include
an
examination
cryptic
and/or
Such
information
on
lineage
context
disturbance
at
regional
scale
can
regardless
whether
decision
made
formally
diagnose
new
taxonomically
nomenclaturally.