Scientific Reports,
Journal Year:
2023,
Volume and Issue:
13(1)
Published: June 24, 2023
Soil
fungi
play
an
indispensable
role
in
the
functioning
of
terrestrial
habitats.
Most
landscape-scale
studies
soil
fungal
diversity
try
to
identify
taxa
present
at
a
study
site
and
define
relationships
between
their
abundance
environmental
factors.
The
specific
spatial
distribution
these
over
site,
however,
is
not
addressed.
Our
study's
main
objective
propose
novel
approach
mapping
using
next
generation
sequencing
geographic
information
system
applications.
Furthermore,
test
proposed
discuss
its
performance,
we
aimed
conduct
case
on
Wielka
Żuława
island.
was
performed
island
northern
Poland,
where
samples
were
collected
every
100
m
even
grid.
relative
each
sample
assessed
Illumina
platform.
Using
data
obtained
for
sampled
points,
maps
generated
three
common
interpolators:
inverted
distance
weighted
(IDW),
B-spline,
ordinary
Kriging.
succeeded
creating
Żuława.
most
abundant
groups
Penicillium
genus
level,
Aspergillaceae
family
ectomycorrhizal
trophic
group
level.
Ordinary
Kriging
proved
be
accurate
predicting
values
significantly
spatially
autocorrelated
scale.
For
displaying
autocorrelation
scale,
IDW
provided
predictions
abundance.
Although
less
exact
values,
B-spline
best
delineating
patterns
distribution.
could
provide
new
insights
into
ecology
ecosystems
general.
Producing
predicted
would
also
facilitate
reusability
replicability
results.
Outside
area
research,
prove
helpful
areas
such
as
agriculture
forestry,
nature
conservation,
urban
planning.
Discover Agriculture,
Journal Year:
2025,
Volume and Issue:
3(1)
Published: Jan. 12, 2025
Ensuring
a
stable
supply
of
nutritious
food
for
the
growing
global
population
is
major
challenge,
especially
through
sustainable
system.
Maize
host
to
vast
microbial
community
in
its
root
zone.
Microorganisms
associated
with
maize
play
an
essential
role
enhancing
plant
growth
and
productivity.
The
purpose
this
review
explore
interactions
within
rhizosphere
maize,
focusing
on
growth-promoting
rhizobacteria
(PGPR),
contribute
improved
phosphorus
solubilization,
nitrogen
fixation,
overall
health.
Through
synthesis
200
papers,
elucidated
rhizosphere,
highlighting
activity
assembly
mechanisms
soil
microorganisms
crucial
crop
production
that
have
been
widely
analyzed.
Incorporating
benefits
into
agricultural
practices
presents
several
challenges,
including
environmental
variability
(temperate
vs
tropical),
unpredictable
field
performance,
influence
advanced
management
techniques
communities.
To
address
these
future
research
should
prioritize
microbiome
engineering,
precision
agriculture,
development
climate-resilient
strains.
A
deeper
understanding
holds
significant
potential
advancing
biofertilizer
farming
by
overcoming
technological,
large-scale
implementation.
Environmental Microbiome,
Journal Year:
2024,
Volume and Issue:
19(1)
Published: Jan. 24, 2024
Abstract
Background
Below-ground
microbes
mediate
key
ecosystem
processes
and
play
a
vital
role
in
plant
nutrition
health.
Understanding
the
composition
of
belowground
microbiome
is
therefore
important
for
maintaining
stability.
The
structure
largely
determined
by
individual
plants,
but
it
not
clear
how
far
their
influence
extends
and,
conversely,
what
other
plants
growing
nearby
is.
Results
To
determine
extent
to
which
focal
host
influences
its
soil
root
when
diverse
community,
we
sampled
bacterial
fungal
communities
three
species
across
primary
successional
grassland
sequence.
magnitude
effect
on
varied
among
microbial
groups,
habitats,
stages
characterized
different
levels
diversity
neighbours.
Soil
were
most
strongly
structured
sampling
site
showed
significant
spatial
patterns
that
partially
driven
chemistry.
was
low
tended
increase
with
succession
increasing
diversity.
In
contrast,
communities,
particularly
bacterial,
species.
Importantly,
also
detected
neighbouring
community
bacteria
fungi
associating
roots
plants.
sequence
highest
site.
Conclusions
Our
results
show
rich
natural
grassland,
depends
environmental
context
modulated
surrounding
community.
neighbours
pronounced
may
have
multiple
consequences
productivity
stability,
stressing
importance
functioning.
Animal Microbiome,
Journal Year:
2024,
Volume and Issue:
6(1)
Published: May 14, 2024
Abstract
Background
Exploring
the
dynamics
of
gut
microbiome
colonisation
during
early-life
stages
is
important
for
understanding
potential
impact
microbes
on
host
development
and
fitness.
Evidence
from
model
organisms
suggests
a
crucial
phase
when
shifts
in
microbiota
can
lead
to
immune
dysregulation
reduced
condition.
However,
our
long-lived
vertebrates,
especially
early
development,
remains
limited.
We
therefore
used
wild
population
common
buzzard
nestlings
(
Buteo
buteo
)
investigate
connections
between
colonisation,
environmental
factors.
Results
targeted
both
bacterial
eukaryotic
using
16S
28S
rRNA
genes.
sampled
individuals
developmental
longitudinal
design.
Our
data
revealed
that
age
significantly
affected
microbial
diversity
composition.
Nest
environment
was
notable
predictor
composition,
with
particularly
communities
differing
habitats
occupied
by
hosts.
Nestling
condition
infection
blood
parasite
Leucocytozoon
predicted
community
Conclusion
findings
emphasise
importance
studying
capture
changes
occurring
ontogeny.
They
highlight
role
reflecting
health
nest
developing
nestling
microbiome.
Overall,
this
study
contributes
complex
interplay
communities,
factors,
variables,
sheds
light
ecological
processes
governing
stages.
Molecular Ecology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 7, 2025
Plant
microbiomes
have
a
major
influence
on
forest
structure
and
functions,
as
well
tree
fitness
evolution.
However,
comprehensive
understanding
of
variations
in
fungi
along
the
soil-plant
continuum,
particularly
within
seedlings,
under
global
warming
is
lacking.
Here,
we
investigated
dynamics
fungal
communities
across
different
compartments
(including
bulk
soil
rhizosphere
soil)
plant
organs
endosphere
roots,
stems
leaves)
Schima
superba
seedlings
exposed
to
experimental
drought
using
AccuITS
absolute
quantitative
sequencing.
Our
results
revealed
that
significantly
reduced
number
specific
amplicon
sequence
variants
(ASVs)
soil,
respectively.
Variations
were
mainly
explained
by
organs,
with
composition
endophytic
leaves
(primarily
attributed
species
gain
or
loss)
being
most
influenced
climate
change.
Moreover,
migration
Ascomycota,
saprotrophs,
wood
saprotrophs
yeasts
from
but
increased
pathogens
roots
stems.
Drought
decreased
abundances
Chytridiomycota,
Glomeromycota
Rozellomycota,
ectomycorrhizal
pathogens.
Warming
could
indirectly
reduce
leaf
area
increasing
diversity
These
findings
potential
implications
for
enhancing
resilience
functioning
natural
ecosystems
change
through
manipulation
microbiomes,
demonstrated
agroecosystems.
Frontiers in Earth Science,
Journal Year:
2023,
Volume and Issue:
10
Published: Jan. 9, 2023
Soil
bacteria
are
a
crucial
component
of
forest
soil
biodiversity
and
play
important
functions
in
numerous
ecosystem
processes.
Hence,
studying
the
variation
diversity
composition
between
latitude
gradients
driving
factors
responsible
for
these
differences
is
understanding
changes
bacteria.
We
used
Illumina
MiSeq
sequencing
bacterial
16S
rRNA
to
investigate
distribution
pattern
temperate
soils
at
three
different
latitudes
northeast
China,
with
samples
taken
low,
middle
high
latitude.
Each
sample
area
was
located
distance
1,200
km.
Our
results
indicate
that
decreased
increasing
Members
phyla
Acidobacteria
Proteobacteria
were
dominant
all
investigated
soils,
highest
relative
abundances
were:
high-latitude
forest,
Rokubacteria
Actinobacteria
low-latitude
forest.
The
genera
forests
Candidatus_Solibacter
,
Bryobacter
Roseiarcus
Granulicella.
Mean
average
temperature,
pH
total
nitrogen
content
key
environmental
shaping
forests.
this
study
contribute
deeper
better
predictions
latitudinal
biodiversity.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 2, 2025
Abstract
The
rhizosphere
contains
a
diverse
group
of
bacteria
and
fungi
living
near
plant
roots
whose
composition
function
are
key
drivers
ecosystem
biogeochemical
processes.
Despite
rich
literature
on
communities,
surprisingly
few
studies
have
examined
the
community
structures
in
natural
settings.
We
collected
513
root
samples
from
141
individual
plants
representing
six
species
three
mycorrhizal
association
types
across
four
glacial
drifts
North
Slope
Alaska.
Glacial
ranged
11,000
to
4.5
million
years
since
deglaciation
gradient
history
mineralogical
weathering.
found
that
history,
strong
proxy
for
soil
mineralogy,
explained
most
captured
variation
bacterial
communities
(13.3%)
ectomycorrhizal
fungal
(10.2%)
while
interactions
between
host
(11.6%).
analyzed
shrub
Betula
nana
spatial
scales
sites
large
correlation
was
similar
among
fragments
belonging
same
plant,
followed
by
at
site,
were
dissimilar
different
sites.
Microorganisms,
Journal Year:
2025,
Volume and Issue:
13(3), P. 513 - 513
Published: Feb. 26, 2025
Soil
microorganisms
are
crucial
for
nutrient
cycling,
with
abundant
and
rare
taxa
playing
distinct
roles.
However,
the
mechanisms
by
which
soil
microbes
influence
cycling
under
different
crop
types
remain
unclear.
In
this
study,
we
investigated
network
structure,
diversity,
microbial
composition
of
croplands
in
Yellow
River
Delta,
focusing
on
four
primary
crops:
soybean,
maize,
cotton,
sorghum.
The
findings
revealed
that
co-occurring
structure
sorghum
planting-soils
exhibited
greater
complexity
than
other
types.
Bacterial
alpha
diversity
cotton-planting
is
highest
susceptible
to
environmental
variations.
both
responds
differently
nutrients
depending
type.
While
play
a
role
multi-nutrient
key
drivers
variations
expression.
showed
strong
correlation
critical
nutrients.
Structural
equation
modeling
bacterial
fungal
significantly
influenced
index
(MNC).
Specifically,
higher
Shannon
indices
were
associated
lower
MNC,
while
opposite
was
true
fungi.
organic
carbon
total
nitrogen
factors
influencing
taxa.
Moreover,
study
provides
new
insights
into
agricultural
ecosystems.
Ecology,
Journal Year:
2025,
Volume and Issue:
106(4)
Published: April 1, 2025
Soil
microorganisms
play
outsized
roles
in
nutrient
cycling,
plant
health,
and
climate
regulation.
Despite
their
importance,
we
have
a
limited
understanding
of
how
soil
microbes
are
affected
by
habitat
fragmentation,
including
responses
to
conditions
at
fragment
edges,
or
"edge
effects."
To
understand
the
communities
edge
effects,
analyzed
distributions
bacteria,
archaea,
fungi
an
experimentally
fragmented
system
open
patches
embedded
within
forest
matrix.
In
addition,
identified
taxa
that
consistently
differed
among
patch,
edge,
matrix
habitats
("specialists")
showed
no
preference
("nonspecialists").
We
hypothesized
microbial
community
turnover
would
be
most
pronounced
between
habitats.
also
specialist
more
likely
mycorrhizal
than
nonspecialist
because
mycorrhizae
should
different
hosts
habitats,
whereas
prokaryotes
smaller
genomes
(indicating
reduced
metabolic
versatility)
less
able
sporulate
prokaryotes.
Across
all
replicate
sites,
patch
soils
harbored
distinct
communities.
However,
sites
where
contrasts
vegetation
pH
were
exhibited
larger
differences
tended
from
those
forest.
There
similar
numbers
specialists,
but
very
few
taxa.
Acidobacteria
ectomycorrhizae
while
Chloroflexi,
Ascomycota,
Glomeromycota
(i.e.,
arbuscular
mycorrhizae)
specialists.
Contrary
our
hypotheses,
bacteria
not
spore-formers.
found
partial
support
for
hypothesis:
mycorrhizae,
ectomycorrhizae,
Overall,
results
indicate
sensitive
equally
affected,
with
particular
showing
strong
response
edges.
context
increasing
fragmentation
worldwide,
can
help
inform
efforts
maintain
structure
functioning
microbiome.