Genome-wide identification and comprehensive analysis of the AP2/ERF gene family in Prunus sibirica under low-temperature stress DOI Creative Commons
Hongrui Zhang, Shipeng Wang, Xin Zhao

et al.

Research Square (Research Square), Journal Year: 2024, Volume and Issue: unknown

Published: June 6, 2024

Abstract Background AP2/ERF transcription factors (TFs) are plant-specific involved in the regulation of plant growth and development response to stresses. Although TFs have been identified numerous species analyzed many, such as Oryza sativa, Arabidopsis thaliana, and Populus trichocarpa, studies on Prunus sibirica (PsAP2/ERF) gene family not reported. In study, 112 PsAP2/ERFs were categorized into 16 subfamilies. Results The same subfamilies typically exhibited similar exon-intron structures motif compositions. all, 50 pairs segmentally duplicated genes within PsAP2/ERF family. results showed that 20 PsAP2/ERFswere highly expressed leaves, roots, pistils, under different conditions low temperature stress. Conclusions This study provides a solid scientific foundation for follow-up research evolutionary characteristics AP2/ERFs P. sibirica, leading an improved understanding molecular basis their developmental low-temperature stress responses, further investigating functional expression PsAP2/ERFs.

Language: Английский

DREB transcription factors are crucial regulators of abiotic stress responses in Gossypium spp. DOI Creative Commons
Salisu Bello Sadau, Zhixin Liu,

Vincent Ninkuu

et al.

Plant Stress, Journal Year: 2024, Volume and Issue: 11, P. 100350 - 100350

Published: Jan. 8, 2024

Plants are adversely affected by abiotic stress conditions such as heat, drought, cold, and salinity. The physiological determinants of cotton tolerance its processes were investigated to mitigate the effect on growth development. DEHYDRATION-RESPONSIVE ELEMENT BINDING protein (DREB) transcription factors stress-responsive regulate expression downstream stress-inducible genes, leading subsequent resistance several stressors. Advanced omics technologies have recently improved our understanding complex molecular events that precede responses. We highlight central mechanisms in cotton, elaborating identified unidentified regulatory variables. evolutionary relationship between DREB (TFs), divided into six subtypes Gossypium hirsutum, raimondii, Arabidopsis thaliana, was reviewed. Moreover, antecedents, conserved motifs, gene structure family been discussed. This review offers an in-depth perspective contribution TFs conditions, salt, heavy metals. Overall, this essential genes spp other species could hasten applied studies toward their engineering plants stress.

Language: Английский

Citations

13
Dehydration-responsive element-binding transcription factor, GuDREB35, positively regulates drought tolerance in licorice (Glycyrrhiza uralensis) DOI
Mingming Yang, Liu L, Menghan Li

et al.

International Journal of Biological Macromolecules, Journal Year: 2025, Volume and Issue: 306, P. 141829 - 141829

Published: March 6, 2025

Language: Английский

Citations

1
Involvement of Alfin-Like Transcription Factors in Plant Development and Stress Response DOI Open Access

Ruixin Jin,

Haitao Yang,

Tayeb Muhammad

et al.

Genes, Journal Year: 2024, Volume and Issue: 15(2), P. 184 - 184

Published: Jan. 29, 2024

Alfin-like (AL) proteins are an important class of transcription factor (TF) widely distributed in eukaryotes and play vital roles many aspects plant growth development. AL contain domain a specific PHD-finger structure at the N-terminus C-terminus, respectively. The PHD can bind to (C/A) CAC element promoter region affect development by regulating expression functional genes. This review describes variety factors that have been isolated characterized Arabidopsis thaliana, Brassica rapa, Zea mays, oleracea, Solanum lycopersicum, Populus trichocarpa, Pyrus bretschenedri, Malus domestica, other species. These studies focused mainly on development, different abiotic stress responses, hormonal responses after exposure pathogenic bacteria. However, molecular mechanisms interactions between signaling pathways rare. In this review, we performed phylogenetic analysis, cluster motif analysis based A. thaliana sequences. We summarize structural characteristics species diverse functions regulation responses. aim study was provide reference for further application action protein family plants.

Language: Английский

Citations

6
Genome-wide identification and analysis of the GGCT gene family in wheat DOI Creative Commons
Long Zhang, Wanting Sun, Weidong Gao

et al.

BMC Genomics, Journal Year: 2024, Volume and Issue: 25(1)

Published: Jan. 4, 2024

Abstract Background γ-glutamylcyclotransferase (GGCT), an enzyme to maintain glutathione homeostasis, plays a vital role in the response plant growth and development as well adaptation various stresses. Although GGCT gene family analysis has been conducted Arabidopsis rice, genes have not yet identified analyzed at genome-wide level wheat ( Triticum aestivum L.). Results In present study, 20 TaGGCT were genome widely distributed on chromosomes 2A, 2B, 2D, 3A, 4A, 5A, 5B, 5D, 6A, 6B, 6D, 7A, 7B, 7D. Phylogenetic structural analyses showed that these could be classified into three subfamilies: ChaC, GGGACT, GGCT-PS. They exhibited similar motif compositions distribution patterns same subgroup. Gene duplication suggested expansion of was facilitated by segmental duplications tandem repeats evolutionary events. Identification diverse cis -acting elements promoters indicated their potential fundamental roles abiotic The transcriptome data combined with RT-qPCR results revealed TaGGCTs ubiquitous expression across organs, highly expressed roots, stems, developing grains. Most up-regulated after 6 h under 20% PEG6000 ABA treatments. Association two haplotypes TaGGCT20 displayed significantly different Thousand-kernel weight (TKW), Kernel length (KL), width (KW) wheat. geographical annual further frequency favorable haplotype TaGGCT20-Hap-I positively selected historical breeding process Conclusion This study investigated identification, structure, evolution, motifs conserved throughout history grains, involved drought Two developed gene, where , haplotype, associated higher TKW, KL, KW wheat, suggesting is used function marker for selection grain yield breeding.

Language: Английский

Citations

4
Genome-wide identification and comprehensive analysis of the AP2/ERF gene family in Prunus sibirica under low-temperature stress DOI Creative Commons
Hongrui Zhang, Shipeng Wang, Xin Zhao

et al.

BMC Plant Biology, Journal Year: 2024, Volume and Issue: 24(1)

Published: Sept. 28, 2024

Language: Английский

Citations

4
Identification of DREB gene family in foxtail millet (Setaria italica) and analysis of its expression pattern in response to abiotic stress DOI Creative Commons
Ya‐Nan Yang, Yun Li,

Zhenqing Guo

et al.

Frontiers in Plant Science, Journal Year: 2025, Volume and Issue: 16

Published: April 28, 2025

Dehydration response element binding proteins (DREBs) play a vital role in transcriptional regulators enhancing plant tolerance to abiotic stress. To investigate the biological functions of DREB gene family (SiDREBs) foxtail millet (Setaria italica), this study performed bioinformatics and expression analysis on SiDREBs under A total 166 members were identified, which classified into six subfamilies. unevenly distributed nine chromosomes, designated as SiDREB1-166 based their chromosomal positions. Covariance revealed that much more closely related monocotyledonous plants sorghum, maize, rice than dicotyledonous Arabidopsis thaliana, tomato, soybean. Promoter cis-acting showed contained stress-related elements. Under saline-alkali stress, SiDREB153 exhibited significantly different levels between resistant susceptible materials, indicating it plays positive regulatory Among stresses, SiDREB80 increased drought, saline-alkali, shade SiDREB4/129/131 rose high temperature SiDREB159 herbicide These genes an important findings provide theoretical basis for further studies function

Language: Английский

Citations

0
Genome-Wide Identification and Functional Characterization of LEA4-5 Genes in Response to Drought Stress in Brassica Species DOI

Laiba Ashfaq,

Shahid Iqbal,

Saeeda Rasheed

et al.

Journal of Plant Growth Regulation, Journal Year: 2025, Volume and Issue: unknown

Published: May 3, 2025

Language: Английский

Citations

0
Genome-wide identification of the bHLH gene family and the mechanism regulation of anthocyanin biosynthesis by ChEGL1 in Cerasus humilis DOI

Xiaolong Ji,

Fan Yang,

Xiumei Zhou

et al.

International Journal of Biological Macromolecules, Journal Year: 2024, Volume and Issue: unknown, P. 138783 - 138783

Published: Dec. 1, 2024

Language: Английский

Citations

3
Genome-wide characterization of the PCO (Plant Cysteine ​​Oxidase) gene family in Phaseolus vulgaris L. and expression analysis under heavy metal stress DOI
Esma Yiğider

South African Journal of Botany, Journal Year: 2025, Volume and Issue: 179, P. 246 - 260

Published: Feb. 22, 2025

Language: Английский

Citations

0
Genome-wide characterization of pepper DREB family members and biological function of CaDREB32 in response to salt and osmotic stresses DOI
Nan Sun, Xudong Sun, Jiale Zhou

et al.

Plant Physiology and Biochemistry, Journal Year: 2025, Volume and Issue: 222, P. 109736 - 109736

Published: March 7, 2025

Language: Английский

Citations

0