International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(23), P. 13138 - 13138
Published: Dec. 6, 2024
In
the
process
of
catalyzing
carotenoids
into
various
apocarotenoids
and
other
derivatives,
carotenoid
cleavage
dioxygenases
(CCDs)
play
key
roles.
However,
little
information
on
CCDs
has
been
reported
in
regard
to
Salvia
miltiorrhiza.
this
study,
a
total
21
CCD
genes
were
identified
whole
genome
S.
miltiorrhiza,
mainly
distributed
between
five
chromosomes.
Phylogenetic
relationship
analysis
revealed
that
SmCCD
classified
four
subfamilies,
including
SmCCD4,
7,
8,
NCED;
members
same
subfamily
show
similar
gene
structures
tertiary
structures.
The
interspecific
collinearity
with
plant
species,
such
as
Arabidopsis
thaliana
Oryza
sativa
was
analyzed.
Cis-elements
demonstrated
majority
stress
response-,
light
growth-,
development-related.
expression
pattern
expressed
analyzed
tissues.
Furthermore,
SmCCD4
varied
their
levels
under
treatment
MeJA,
YE,
ABA,
indicating
potential
function
metabolism
general,
study
provides
systematic
lays
foundation
for
uncovering
regulation
Ecotoxicology and Environmental Safety,
Journal Year:
2024,
Volume and Issue:
283, P. 116848 - 116848
Published: Aug. 7, 2024
This
comprehensive
review
articulates
critical
insights
into
the
nexus
of
environmental
stressors
and
their
health
impacts
across
diverse
species,
underscoring
significant
findings
that
reveal
profound
effects
on
both
wildlife
human
systems.
Central
to
our
examination
is
role
pollutants,
climate
variables,
pathogens
in
contributing
complex
disease
dynamics
physiological
disruptions,
with
particular
emphasis
immune
endocrine
functions.
research
brings
light
emerging
evidence
severe
implications
pressures
a
variety
taxa,
including
predatory
mammals,
raptorial
birds,
seabirds,
fish,
humans,
which
are
pivotal
as
indicators
broader
ecosystem
stability.
We
delve
nuanced
interplay
between
degradation
zoonotic
diseases,
highlighting
novel
intersections
pose
risks
biodiversity
populations.
The
critically
evaluates
current
methodologies
advances
understanding
morphological,
histopathological,
biochemical
responses
these
organisms
stressors.
discuss
for
conservation
strategies,
advocating
more
integrated
approach
incorporates
zoonoses
pollution
control.
synthesis
not
only
contributes
academic
discourse
but
also
aims
influence
policy
by
aligning
Global
Goals
Sustainable
Development.
It
underscores
urgent
need
sustainable
interactions
humans
environments,
preserving
ensuring
global
security.
By
presenting
detailed
analysis
interdependencies
biological
health,
this
highlights
gaps
provides
foundation
future
studies
aimed
at
mitigating
pressing
issues.
Our
study
it
proposes
integrative
actionable
strategies
address
challenges
intersection
change
public
marking
crucial
step
forward
planetary
science.
BMC Plant Biology,
Journal Year:
2024,
Volume and Issue:
24(1)
Published: July 19, 2024
Abstract
Background
Laccase
(LAC)
gene
family
plays
a
pivotal
role
in
plant
lignin
biosynthesis
and
adaptation
to
various
stresses.
Limited
research
has
been
conducted
on
laccase
genes
common
beans.
Results
29
LAC
members
were
identified
within
the
bean
genome,
distributed
unevenly
9
chromosomes.
These
divided
into
6
distinct
subclades
by
phylogenetic
analysis.
Further
analyses
synteny
indicated
that
considerable
duplication
loss
presented
throughout
evolution
of
family.
Purified
selection
was
shown
be
major
evolutionary
force
through
Ka
/
Ks.
Transcriptional
changes
PvLAC
under
low
temperature
salt
stress
observed,
emphasizing
regulatory
function
these
such
conditions.
Regulation
abscisic
acid
gibberellins
appears
case
for
PvLAC3
,
PvLAC4
PvLAC7
PvLAC13
PvLAC14
PvLAC18
PvLAC23
PvLAC26
as
hormone
induction
experiments.
Additionally,
regulation
response
nicosulfuron
low-temperature
virus-induced
silence,
which
demonstrated
inhibition
growth
development
Conclusions
The
provides
valuable
genetic
resources
improving
resistance
beans
abiotic
stresses
enhance
understanding
functional
roles
Horticulturae,
Journal Year:
2025,
Volume and Issue:
11(2), P. 138 - 138
Published: Jan. 28, 2025
Tree
peony
(Paeonia
ostii
T.
Hong
et
J.
X.
Zhang)
is
an
important
medicinal
and
ornamental
plant.
It
would
be
useful
to
propagate
this
plant
in
tissue
culture,
but
it
difficult
induce
root
formation.
Auxin
plays
a
pivotal
role
adventitious
formation,
ABCB
transporter
proteins
are
involved
auxin
transport.
To
elucidate
the
function
of
family
P.
ostii,
we
identified
members
gene
genome
analyzed
functional
characteristics
putative
proteins.
In
total,
29
genes
were
P.ostii,
distributed
on
five
chromosomes.
phylogenetic
analysis,
PoABCBs
grouped
into
four
subfamilies,
with
largest
being
Subfamily
I,
characterized
by
their
MDR
structure.
PoABCB
same
subfamily
exhibited
similar
intron/exon
arrangements
motif
composition.
The
promoters
contained
cis-acting
elements
associated
photoresponse
hormone
signaling.
qRT-PCR
analyses
showed
that,
after
treatment
tissue-cultured
seedlings
auxin,
(PoABCB6,
PoABCB10,
PoABCB11,
PoABCB12,
PoABCB16)
significantly
upregulated
during
development.
These
may
play
roles
response
development
vitro.
Bulletin of Biological and Allied Sciences Research,
Journal Year:
2025,
Volume and Issue:
2025(1), P. 100 - 100
Published: March 20, 2025
Biotechnology
plays
a
transformative
role
in
enhancing
agricultural
productivity
and
crop
protection
by
integrating
cutting-edge
genetic
tools,
including
engineering,
marker-assisted
selection,
molecular
diagnostics.
These
have
led
to
the
development
of
genetically
modified
crops
(GMOs)
improved
pest,
disease,
abiotic
stress
resistance
through
gene
editing
techniques
like
CRISPR-Cas9.
Besides
that,
innovations
bioinformatics
simulation
modeling
optimized
farming
techniques,
residual
harvesting,
without
causing
detrimental
environmental
impacts
emission
greenhouse
gases
soil
degradation.
Residual
harvesting
has
shown
significant
on
yield
health.
Research
shows
that
with
accurate
residue
management,
it
is
possible
enhance
fertility
performance
while
reducing
carbon
emissions
erosion.
Molecular
markers,
such
as
SNPs
AFLPs,
are
instrumental
fast-tracking
breeding
programs
produce
varieties
tolerant
biotic
stresses
so
resilient
may
be
produced.
applications,
precision
breeding,
transformed
agriculture
introducing
traits
include
drought
heat
tolerance,
nutrient
efficiency,
enhanced
yields.
Successful
case
studies,
Bt
cotton,
golden
rice,
blight-resistant
potatoes,
illustrative
potential
biotechnology
solve
challenges
global
food
security.
The
IPM
strategies,
grounded
biotechnological
breakthroughs,
reduced
usage
chemical
inputs,
therefore
promoting
sustainable
practices.
This
multidimensional
approach
underscores
biotechnology's
addressing
growing
population,
ensuring
security,
fostering
development.
Through
merging
traditional
practices
modern
presents
pathway
toward
resilient,
high-yielding,
environmentally
systems.
BMC Plant Biology,
Journal Year:
2025,
Volume and Issue:
25(1)
Published: April 12, 2025
Carotenoid
cleavage
oxygenases
(CCOs)
convert
carotenoids
into
volatile
aromatic
compounds
implicated
in
plant
growth
and
development.
They
affect
the
synthesis
of
hormones,
including
abscisic
acid
(ABA)
strigolactone
(SL).
However,
CCO
family
Tartary
buckwheat
remains
unelucidated.
We
identified
FtCCO
gene
based
on
genomic
data
analyzed
biological
function
genes
using
bioinformatics
methods
expression
pattern
fluorescence
quantitative
PCR.
Three
pairs
fragment
duplication
were
found
FtCCOs,
motifs
highly
conserved
within
same
subfamily.
are
closely
related
to
dicotyledonous
Arabidopsis
thaliana,
which
has
highest
number
co-linear
genes.
The
qRT-PCR
showed
that
among
tissue-specific
patterns
genes,
FtCCOs
was
higher
leaves.
In
grain
development,
relative
most
at
later
stage.
many
stems
under
cold,
dark,
NaCl,
abiotic
stress
conditions.
hormone
regulator
treatments,
nine
relatively
low
stems.
Notably,
FtNCED4
extremely
high
induction,
indicating
may
be
involved
development
buckwheat.
this
study,
genome-wide
level,
different
tissues
or
treatments
determined.
This
study
provides
a
theoretical
basis
for
further
analysis
functions
theFtCCO
family,
is
great
significance
mining
resistance
trait
improvement.
International Journal of Molecular Sciences,
Journal Year:
2025,
Volume and Issue:
26(9), P. 4159 - 4159
Published: April 27, 2025
Arabinogalactan
proteins
(AGPs)
constitute
a
diverse
class
of
hydroxyproline-rich
glycoproteins
implicated
in
various
aspects
plant
growth
and
development.
However,
their
functional
characterization
cotton
(Gossypium
spp.)
remains
limited.
As
globally
significant
economic
crop,
serves
as
the
primary
source
natural
fiber,
making
it
essential
to
understand
genetic
mechanisms
underlying
its
This
study
aims
perform
comprehensive
genome-wide
identification
AGP
gene
family
Gossypium
spp.,
with
particular
focus
on
elucidating
structural
features,
evolutionary
relationships,
roles.
A
analysis
was
conducted
identify
genes
followed
by
classification
into
distinct
subfamilies
based
sequence
characteristics.
Protein
motif
composition,
structure,
phylogenetic
relationships
were
examined
infer
potential
diversification.
Subcellular
localization
key
candidate
gene,
GhAGP50,
determined
using
fluorescent
protein
tagging,
while
expression
patterns
assessed
through
β-glucuronidase
(GUS)
reporter
assays.
Additionally,
hormonal
regulation
GhAGP50
investigated
via
treatments
methyl
jasmonate
(MeJA),
abscisic
acid
(ABA),
indole-3-acetic
(IAA),
gibberellin
(GA).
total
220
identified
comprising
19
classical
AGPs,
28
lysine-rich
55
AG
peptides,
118
fasciclin-like
AGPs
(FLAs).
Structural
analyses
revealed
variation
organization
conserved
motifs
across
subfamilies.
Functional
an
ortholog
AGP18
Arabidopsis
thaliana,
demonstrated
role
promoting
epidermal
hair
formation
leaves
stalks.
studies
indicated
that
is
targeted
nucleus
plasma
membrane.
GUS
staining
assays
broad
multiple
tissues,
including
leaves,
inflorescences,
roots,
stems.
Furthermore,
treatment
experiments
showed
modulated
MeJA,
ABA,
IAA,
GA,
suggesting
involvement
hormone-mediated
developmental
processes.
presents
cotton,
providing
new
insights
diversity
significance.
The
highlight
regulation,
contributing
deeper
understanding
functions
These
findings
offer
valuable
resource
for
future
research
aimed
at
improving
fiber
quality
manipulation.
PeerJ,
Journal Year:
2024,
Volume and Issue:
12, P. e17162 - e17162
Published: March 28, 2024
The
cytochrome
P450
(CYP450)
gene
family
plays
a
vital
role
in
basic
metabolism,
hormone
signaling,
and
enhances
plant
resistance
to
stress.
Among
them,
the
CYP82
is
primarily
found
dicots,
they
are
typically
activated
response
various
specific
environmental
stresses.
Nevertheless,
their
roles
remain
considerably
obscure,
particularly
within
context
of
cucumber.
In
present
study,
12
subfamily
genes
were
identified
cucumber
genome.
Bioinformatics
analysis
included
structure,
conserved
motif,
cis-acting
promoter
element,
so
on.
Subcellular
localization
predicted
that
all
located
endoplasmic
reticulum.
results
cis
element
showed
CYP82s
may
significantly
affect
stress,
hormones,
light
exposure.
Expression
patterns
characterized
by
mining
available
RNA-seq
data
followed
qRT-PCR
(quantitative
real-time
polymerase
chain
reaction)
analysis.
Members
display
expression
profiles
different
tissues,
PM
abiotic
stresses
this
CsCYP82D102
,
member
family,
was
investigated.
upregulation
powdery
mildew
(PM)
infection
treatment
with
methyl
jasmonate
(MeJA)
or
salicylic
acid
(SA)
demonstrated.
Further
research
transgenic
plants
overexpressing
heightened
against
PM.
Wild-type
(WT)
leaves
exhibited
average
lesion
areas
approximately
29.7%
at
7
dpi
upon
inoculation.
contrast,
two
independent
overexpression
lines
(OE#1
OE#3)
displayed
reduced
necrotic
areas,
13.4%
5.7%.
Additionally,
enhanced
associated
elevated
related
SA/MeJA
signaling
pathway
plants.
This
study
provides
theoretical
basis
for
further
on
biological
functions
BMC Genomics,
Journal Year:
2024,
Volume and Issue:
25(1)
Published: Sept. 18, 2024
Carotenoid
cleavage
oxygenases
(CCOs)
are
a
group
of
enzymes
that
catalyze
the
oxidative
carotenoid
molecules.
These
widely
exist
in
plants,
fungi,
and
certain
bacteria,
involved
various
biological
processes.
It
would
be
great
importance
necessity
to
identify
CCO
members
birch
characterize
their
responses
upon
abiotic
stresses.
International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(19), P. 10264 - 10264
Published: Sept. 24, 2024
Carotenoid
cleavage
oxygenases
(CCOs)
cleave
carotenoid
molecules
to
produce
bioactive
products
that
influence
the
synthesis
of
hormones
such
as
abscisic
acid
(ABA)
and
strigolactones
(SL),
which
regulate
plant
growth,
development,
stress
adaptation.
Here,
explore
molecular
characteristics
all
members
OsCCO
family
in
rice,
fourteen
genes
were
identified
genome-wide
study.
The
results
revealed
included
one
OsNCED
four
OsCCD
subfamilies.
was
phylogenetically
close
maize
ZmCCO
Sorghum
SbCCO
family.
A
collinearity
relationship
observed
between
OsNCED3
OsNCED5
well
OsCCD7
rice
Arabidopsis,
Sorghum,
maize.
OsCCD4a
key
protein
interaction
network
family,
involved
catabolic
processes
carotenoids
terpenoid
compounds.
miRNAs
targeting
mostly
abiotic
response,
RNA-seq
data
further
confirmed
properties
response
hormone
induction.
qRT-PCR
analysis
showed
differential
expression
patterns
across
various
organs.
Notably,
OsCCD1
relatively
high
levels
organs
except
for
ripening
seeds
endosperm.
OsNCED2a,
OsNCED3,
OsCCD1,
OsCCD4a,
OsCCD7,
OsCCD8a,
OsCCD8e
potentially
growth
differentiation.
Meanwhile,
OsNCED2b,
OsNCED5,
OsCCD8b,
OsCCD8d
associated
with
reproductive
organ
flowering,
seed
formation.
OsCCD4b,
OsCCD4c,
OsCCD8c
related
assimilate
transport
maturation.
These
findings
provide
a
theoretical
basis
functional