De-novo assembly and comparative analysis of the complete mitogenome of traditional Chinese medicine Strobilanthes sarcorrhiza DOI Creative Commons
Yujie Shi, Ping Li, Jian Sun

et al.

BMC Plant Biology, Journal Year: 2025, Volume and Issue: 25(1)

Published: May 21, 2025

Abstract Background Strobilanthes sarcorrhiza is a traditional medicinal plant known for its heat-clearing and kidney-nourishing properties. While plastid genome has been reported, there scarcity of genetic information regarding mitogenome, leading to unclear phylogenetic relationships. We sequenced assembled the complete mitogenome conducted series analyses in conjunction with gain better understanding species’ background. Results The comprised linear structure spanning 617,134 bp. It included 35 protein-coding genes (PCGs), 19 transfer RNAs (tRNAs), 3 ribosomal (rRNAs) that have annotated. Additionally, 122 simple sequence repeats (SSRs) 25 tandem were identified. A total 1,482 pairs dispersed detected, which account 17.58% entire mitogenome. Furthermore, 37 migration fragments between mitochondrial genomes discovered, consisting 5 PCGs, 7 tRNAs, 1 rRNA. Based on analysis 38 mitogenomes 46 genomes, evolutionary relationship position S. elucidated. Conclusions This study has, first time, provided insights into genomic characteristics clarified position. These findings offered significant future identification classification this genus, as well breeding plants.

Language: Английский

De-novo assembly and comparative analysis of the complete mitogenome of traditional Chinese medicine Strobilanthes sarcorrhiza DOI Creative Commons
Yujie Shi, Ping Li, Jian Sun

et al.

BMC Plant Biology, Journal Year: 2025, Volume and Issue: 25(1)

Published: May 21, 2025

Abstract Background Strobilanthes sarcorrhiza is a traditional medicinal plant known for its heat-clearing and kidney-nourishing properties. While plastid genome has been reported, there scarcity of genetic information regarding mitogenome, leading to unclear phylogenetic relationships. We sequenced assembled the complete mitogenome conducted series analyses in conjunction with gain better understanding species’ background. Results The comprised linear structure spanning 617,134 bp. It included 35 protein-coding genes (PCGs), 19 transfer RNAs (tRNAs), 3 ribosomal (rRNAs) that have annotated. Additionally, 122 simple sequence repeats (SSRs) 25 tandem were identified. A total 1,482 pairs dispersed detected, which account 17.58% entire mitogenome. Furthermore, 37 migration fragments between mitochondrial genomes discovered, consisting 5 PCGs, 7 tRNAs, 1 rRNA. Based on analysis 38 mitogenomes 46 genomes, evolutionary relationship position S. elucidated. Conclusions This study has, first time, provided insights into genomic characteristics clarified position. These findings offered significant future identification classification this genus, as well breeding plants.

Language: Английский

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