Frontiers in Microbiology,
Journal Year:
2024,
Volume and Issue:
15
Published: Dec. 18, 2024
Global
citrus
production
has
been
severely
affected
by
Huanglongbing
(HLB)
disease,
caused
Candidatus
Liberibacter
asiaticus
(Clas),
and
the
development
of
effective
control
methods
are
crucial.
This
study
employed
antimicrobial
lipopeptide
phytohormone
complex
powder
(L1)
prepared
from
fermentation
broth
endophytic
plant
growth
promoting
bacterium
(PGPB)
Molecules,
Journal Year:
2025,
Volume and Issue:
30(4), P. 863 - 863
Published: Feb. 13, 2025
Natural
surfactants
are
surface-active
molecules
synthesized
from
renewable
resources
(i.e.,
plants,
animals,
or
microorganisms)
and
possess
properties
comparable
to
conventional
surfactants,
making
them
an
environmentally
friendly
potential
alternative
petrochemical
surfactants.
Additionally,
they
exhibit
biological
such
as
anti-microbial
properties,
biodegradability,
less
toxicity,
allowing
their
use
in
everyday
products
with
minimal
risk
human
health
the
environment.
Based
on
mode
of
production,
natural
can
be
classified
into
first-generation
bio-based
second-generation
biosurfactants,
although
definition
may
vary
depending
author
literature.
This
review
offers
extensive
classification
focusing
composition,
sources,
production
methods,
applications
across
various
industries.
Furthermore,
main
challenges
future
perspectives
discussed.
International Journal of Molecular Sciences,
Journal Year:
2025,
Volume and Issue:
26(1), P. 336 - 336
Published: Jan. 2, 2025
Bacillus
cyclic
lipopeptides
(CLP),
part
of
the
three
main
families—surfactins,
iturins,
and
fengycins—are
secondary
metabolites
with
a
unique
chemical
structure
that
includes
both
peptide
lipid
components.
Being
amphiphilic
compounds,
CLPs
exhibit
antimicrobial
activity
in
vitro,
damaging
membranes
microorganisms.
However,
concentrations
used
vitro
are
difficult
to
achieve
natural
conditions.
Therefore,
environment,
alternative
mechanisms
action
by
more
likely,
such
as
inducing
apoptosis
fungal
cells,
preventing
microbial
adhesion
substrate,
promoting
death
phytopathogens
stimulating
plant
immune
responses.
In
addition,
low
act
signaling
molecules
Bacillus’s
own
metabolism,
when
environmental
conditions
change,
they
form
an
adaptive
response
host
bacterium.
Namely,
trigger
differentiation
bacterial
population
into
various
specialized
cell
types:
competent
flagellated
matrix
producers,
spores.
this
review,
we
have
summarized
current
understanding
under
experimental
We
also
shown
relationship
between
some
regulatory
pathways
involved
CLP
biosynthesis
differentiation,
well
role
determine
changes
physiological
state
subpopulations
shifts
Microbial Biotechnology,
Journal Year:
2025,
Volume and Issue:
18(3)
Published: March 1, 2025
ABSTRACT
Outer
space
is
an
extreme
environment
and
the
survival
of
many
microorganisms
after
spaceflight
well
established.
However,
adaptations
Bacillus
subtilis
to
stress,
particularly
metabolism,
are
largely
unknown.
Here,
we
first
performed
a
mission
B.
TD7
strain
compared
spaceflight‐exposed
with
wild‐type
in
terms
their
phenotype,
biofilm
formation
secondary
metabolism.
The
exhibited
slower
growth,
different
morphology
decreased
formation.
Importantly,
decline
lipopeptide
production
was
observed
spaceflight.
Multi‐omics
approaches
were
used
uncover
molecular
mechanisms
underlying
metabolism
997
differentially
expressed
genes
(DEGs)
found,
involving
TCA
cycle,
fatty
acid
degradation,
amino
biosynthesis
quorum
sensing
systems.
Further
analysis
26
lipopeptide‐related
DEGs
further
elucidated
relationship
between
regulation.
Our
findings
could
contribute
better
understanding
microbial
adaptation
mechanisms.
Scientific Reports,
Journal Year:
2025,
Volume and Issue:
15(1)
Published: March 28, 2025
The
B115
strain,
isolated
from
the
inter-root
soil
of
healthy
plants
in
a
continuous
cropping
site
Panax
notoginseng,
was
identified
as
Bacillus
velezensis
by
16S
rDNA
sequence
comparison
and
comparative
genomic
analysis.
is
strain
beneficial
microorganisms
present
zone
plants,
with
favorable
plant
growth-promoting
properties
antagonistic
effects
against
pathogen
Fusarium
oxysporum.
However,
whole
genome
remains
unclear,
thus
restricting
its
potential
applications.
To
address
this
gap,
has
been
sequenced
annotated
to
elucidate
molecular
mechanisms
underlying
antimicrobial
activities.
analysis
revealed
that
comprises
single
circular
chromosome
4,200,774
bp
plasmid
region
16,878
long,
possessing
GC
content
45.95%.
Moreover,
4349
protein-coding
genes
were
predicted.
Notably,
contains
substantial
number
(103)
involved
biosynthesis,
transport,
catabolism
secondary
metabolites.
Through
mining,
13
BGCs
540
encoding
metabolites
predicted
roles
identified,
including
members
surfactin
fengycin
families.
Utilizing
LC–MS/MS
technologies,
2318
detected
fermentation
broth
B.
B115,
encompassing
compounds
such
Corynebactin,
Gamabufotalin,
Pracinostat,
Indoleacetic
acid,
(8)-Gingerol,
Luteolin,
Liquiritigenin,
other
antimicrobial,
growth-promoting,
antioxidant,
antitumor
properties.
By
exploring
metabolite-related
predicting
based
on
whole-genome
results,
we
further
basis
for
ability
promote
growth
inhibit
activity.
Journal of Agricultural and Food Chemistry,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 31, 2025
Aminopeptidases
are
crucial
hydrolases
in
the
food
and
pharmaceutical
industries.
This
study
addresses
need
to
enhance
catalytic
performance
of
Pseudomonas
aeruginosa
aminopeptidase
(PaAps)
through
a
multifaceted
computational
design
strategy.
We
introduced
single-site
mutations
followed
by
combinatorial
develop
mutant
library,
identifying
optimal
S112D,
which
demonstrated
5.19-fold
increase
activity
nearly
doubled
thermostability
compared
wild
type.
The
kinetic
parameters
(kcat,
kcat/Km,
Vmax)
S112D
were
found
be
4.36,
6.52,
4.36
times
greater
than
those
type,
respectively.
Molecular
dynamics
(MD)
simulations
revealed
that
induced
global
conformational
changes,
resulting
more
open
active
pocket
facilitated
better
binding
with
substrate,
thereby
improving
stability.
Additionally,
exhibited
closer
nucleophilic
attack
distance
stronger
hydrogen
bonding
interactions,
further
boosting
efficiency.
Remarkably,
as
well
showed
hydrolytic
on
both
corn
soybean
proteins.
hydrolysis
rate
protein
was
approximately
1.92
PaAps,
for
protein,
it
is
roughly
1.84
times.
These
findings
offered
valuable
insights
developing
efficient
enzyme
modification
strategies.
Journal of Bacteriology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 16, 2025
ABSTRACT
TerC
family
proteins
are
widely
conserved
integral
membrane
with
functions
related
to
metal
transport.
In
Bacillus
subtilis
,
the
MeeF
and
MeeY
play
overlapping
roles
in
metalation
of
manganese-requiring
extracellular
enzymes.
interact
secretion
translocon
SecYEG
metalate
either
during
or
after
protein
translocation.
Here,
we
demonstrate
that
swarming
motility
is
dependent
on
MeeY.
This
defect
can
be
complemented
extracellularly
correlated
a
loss
surfactin.
Surfactin
export
mediated
by
SwrC,
an
RND
efflux
pump
previously
shown
co-immunoprecipitation
studies.
The
amendment
growth
medium
manganese
has
long
been
known
enhance
surfactin
production.
We
suggest
model
which
enhanced
MeeY-dependent
lipopeptide
export.
IMPORTANCE
produces
surfactin,
powerful
detergent-like
compound
intercellular
communication,
surface
motility,
as
broad-spectrum
antimicrobial
agent.
Production
cyclic
lipopeptide,
depends
non-ribosomal
peptide
synthase
followed
member
resistance-nodulation-cell
division
(RND)
proteins.
production
additionally
requires
MeeY,
exports
ions
support
function
secreted
metalloenzymes.
propose
interacts
SwrC
facilitate
binding
from
cell.
These
results
may
explain
long-appreciated
role
divalent
industrial
fermentation.
Proceedings of the National Academy of Sciences,
Journal Year:
2025,
Volume and Issue:
122(18)
Published: April 29, 2025
Bacteria
are
known
to
allocate
their
proteomes
according
how
fast
they
grow,
and
the
allocation
strategies
employed
strongly
affect
bacterial
adaptation
different
environments.
Much
of
what
is
currently
about
proteome
based
on
extensive
studies
model
organism
Escherichia
coli
.
It
not
clear
much
E.
’s
strategy
applicable
other
species,
particularly
since
species
can
grow
at
vastly
rates
even
in
same
growth
condition.
In
this
study,
we
investigate
differences
nutrient-dependent
programs
adopted
by
several
distantly
related
including
Vibrio
natriegens
,
one
fastest-growing
bacteria
known.
Extensive
quantitative
characterization
across
conditions
reveals
an
invariant
program
response
changing
nutrients
despite
systemic,
species-specific
enzyme
kinetics.
This
organized
rate
but
a
common
internal
metric
nutrient
quality
after
scaling
away
kinetics,
with
faster
behaving
as
if
it
growing
under
higher
temperature.
The
flexibility
kinetics
rigidity
defy
notions
evolvability
resource
optimization.
Our
results
suggest
existence
blueprint
shared
diverse
implications
underlying
regulatory
strategies.
Further
knowledge
organization
such
phylogeny-transcending
relations
also
promises
simplify
bottom–up
description
understanding
behaviors
ecological
communities.
ABSTRACT
Plants
are
an
intrinsic
part
of
the
soil
community,
which
is
comprised
a
diverse
range
organisms
that
interact
in
rhizosphere
through
continuous
molecular
communications.
The
dialogue
within
plant
microbiome
involves
complex
repertoire
primary
and
secondary
metabolites
different
liquid
matrices
biofilms.
Communication
functions
likely
to
involve
membrane‐less
organelles
formed
by
liquid−liquid
phase
separation
proteins
natural
deep
eutectic
solvents
play
role
as
alternative
media
water.
We
discuss
chemistry
inter‐organism
communication
signalling
biosphere
allows
plants
discriminate
between
harmful,
benign
beneficial
microorganisms.
summarize
current
information
concerning
chemical
underpins
plant−microbe
host‐range
specificity.
highlight
how
regulated
production,
perception
processing
reactive
oxygen
species
(ROS)
used
microbes
communities
shape
microbiome.