Integrating single-cell and bulk RNA-seq to reveal cholesterol homeostasis-related genes via machine learning to predict prognosis and therapeutic response in hepatocellular carcinoma
Xiaozhen Ji,
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Wei Wang,
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Ke Wu
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et al.
Research Square (Research Square),
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 21, 2025
Abstract
Background:
Liver
cancer,
particularly
hepatocellular
carcinoma
(HCC),
has
emerged
as
a
significant
global
health
challenge.
Recent
studies
have
highlighted
cholesterol
homeostasis
(CH)
new
research
frontier,
providing
insights
into
its
involvement
in
diverse
biological
functions
and
diseases.
This
study
seeks
to
investigate
the
significance
of
CH
context
HCC.
Methods:
This
explores
CH's
role
HCC
using
single-cell
RNA
sequencing
data
(GSE140228)
from
TISCH
database,
analyzed
via
"Seurat"
R
package.
Genes
associated
with
were
sourced
MsigDB
database.
Utilizing
these
CH-related
genes,
we
performed
unsupervised
hierarchical
clustering
analysis
stratify
(HCC)
molecular
subtypes.
A
comprehensive
was
conducted
on
differences
among
identified
clusters,
focusing
clinical
characteristics,
pathways,
infiltration
immune
cells.
By
leveraging
score
computed
various
machine
learning
techniques
predict
overall
survival
patients
Results:
We
began
by
investigating
subsequently
identifying
three
distinct
risk
model
developed
classify
high-score
low-score
groups.
Evaluation
tumor
microenvironment
(TIME)
demonstrated
that
individuals
categorized
high-risk
subgroup
showed
significantly
reduced
rates
diminished
therapeutic
efficacy
response
checkpoint
inhibitor
treatment
regimens.
ANXA5,
ADH4,
ATXN2,
ACTG1,
MVD,
S100A11
essential
genes
Conclusion:
We
signature
derived
offers
strong
prediction
outcomes
responses
immunotherapy
Language: Английский
Apolipoprotein E in Alzheimer’s disease: molecular insights and therapeutic opportunities
Molecular Neurodegeneration,
Journal Year:
2025,
Volume and Issue:
20(1)
Published: April 24, 2025
Abstract
Apolipoprotein
E
(
APOE-
gene;
apoE-
protein)
is
the
strongest
genetic
modulator
of
late-onset
Alzheimer’s
disease
(AD),
with
its
three
major
isoforms
conferring
risk
for
ε2
<
ε3
ε4.
Emerging
protective
gene
variants,
such
as
APOE
Christchurch
and
COLBOS
variant
REELIN
,
an
alternative
target
certain
apoE
receptors,
offer
novel
insights
into
resilience
against
AD.
In
recent
years,
role
has
been
shown
to
extend
beyond
primary
function
in
lipid
transport,
influencing
multiple
biological
processes,
including
amyloid-β
(Aβ)
aggregation,
tau
pathology,
neuroinflammation,
autophagy,
cerebrovascular
integrity
protection
from
peroxidation
resulting
ferroptotic
cell
death.
While
detrimental
influence
ε4
on
these
other
processes
well
described,
molecular
mechanisms
underpinning
this
disadvantage
require
further
enunciation,
particularly
realize
therapeutic
opportunities
related
apoE.
This
review
explores
multifaceted
roles
AD
pathogenesis,
emphasizing
discoveries
translational
approaches
apoE-mediated
pathways.
These
findings
underscore
potential
apoE-based
strategies
prevent
or
mitigate
genetically
at-risk
populations.
Language: Английский